Rw1G035530

Cell cycle regulated microtubule associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0006192
Physical Location & Seq
Forward (+)
63275271 .. 63278373
3103 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G035530.1

Sequence Viewer

Length: 1182 bp
ATGGACGACGAAGAAATGATGGAGTTTGTTAAGGAGGCTTTCGAGGGTGAAGAAATTGACATGGATTATGAGTTCGACGCGCCTAGGTTCTATGATTTTACAACGCTTGAAACCGATTGGGAGGCTGAAGTGGCTGAAGATTGGTTCAGATACGCCGGAAGTTATCCTTCGTCTCCTTTTATCGTGAGATTGTTGAATTGGCACAAAGGCAATTCTCTTGAGGAAACAACGGACACCTCTGCGGAATTCAAAGATGTTGAATGCATTAAATGTGCTAGCATCGAGTCGAAGAATAGCATGGAAGCTGAGGGTTCTTCAATAGAAGATGATAGTAACGGAGTTTTCATATTTCTAACAGGAGTAAAATGCTCTAATAAAATGGATCAAGATACTCTAAAAGCTAAAACCAAGTCCTCGGTCAAGTCACCATCCATATCAAGGAGTTCAACTTTGATGAAACCCACAGCGAGTCAATTAGCCAAGGCAAAACAGCGTCGTCATGAAGTTCGACAATCTCACTCCAATCGATTATCGAGGAGGCTTGAGAAGAAGCTAGGGAAAGTCGCGGAGAATTCACCGAGTTCTCCATTATTCGATAGTGTAGCAACTAAAAGACAGAAGTTGGAGGCTGGCTATGTGCGGAAGGTTTCTCAACTTACGCATCAACCTCTTTGGTTACACAAGTCGCCAAAAAAGGTTGGAACTGCTGTAACGTCACCAAATGGTAGACCTAAAGTCACCATTCCTAGAGAACCAAACTTGGAAACAGCACAAAGGGCACAAAGACGTAGGTATAAGACTATTGCGAAAGATGGAGAACAAGCAAAAATTATCAAGGAGCCTCCATGGACCCTGCCTAAGAAGAGCACACCACAAGCAAAAGAATTTCAAGTGTTTTATTTCAGGACATCACAAAGAGCTAAGCAAAGCACAGTCGATAATGTGACAAACACACCGATTTCTAGTTGTTTATCACCAACTGAAGCCACAGAGATTAAAGGATCAAACTCTGCCTCTGCCAAGAGAGATAAATGCAAAGTACTCTCTCTTAAAAAGAAGGAATTAAAGTTTGACAAGAGGATTATGAAGGAGCCACCAACAGATTTATTCAGCAAGCTCTCACTTGCACCTGAAGCCCATCATAATGCAAATCCTGAGCTTAAAACTGCCTATGCCTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPX2_importin

Protein Analysis

393

Amino Acids

44.47

Weight (kDa)

9.15

Isoelectric Point (pI)

56.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPX2_importin PF12214 245 - 313 8.7e-10 Cell cycle regulated microtubule associated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 727
AccII CGCG 2 cut(s) 80, 566
AciI CCGC 3 cut(s) 242, 566, 640
AclWI GGATC 2 cut(s) 390, 1009
AcsI RAATTY 3 cut(s) 245, 571, 884
AcuI CTGAAG 4 cut(s) 147, 156, 1002, 1152
AfaI GTAC 1 cut(s) 1041
AfiI CCNNNNNNNGG 1 cut(s) 438
AgsI TTSAA 7 cut(s) 110, 196, 250, 260, 318, 447, 890
AhdI GACNNNNNGTC 1 cut(s) 734
AloI GAACNNNNNNTCC 2 cut(s) 56, 88
AluBI AGCT 6 cut(s) 305, 401, 553, 920, 1117, 1159
AluI AGCT 6 cut(s) 305, 401, 553, 920, 1117, 1159
Alw21I GWGCWC 1 cut(s) 869
Alw26I GTCTC 1 cut(s) 177
AlwI GGATC 2 cut(s) 390, 1009
ApoI RAATTY 3 cut(s) 245, 571, 884
AspA2I CCTAGG 1 cut(s) 83
AspLEI GCGC 1 cut(s) 82
AspS9I GGNCC 1 cut(s) 849
AsuHPI GGTGA 6 cut(s) 59, 417, 567, 708, 730, 966
AsuNHI GCTAGC 1 cut(s) 275
AvaII GGWCC 1 cut(s) 849
AvrII CCTAGG 1 cut(s) 83
BaeGI GKGCMC 1 cut(s) 781
Bbv12I GWGCWC 1 cut(s) 869
BbvCI CCTCAGC 1 cut(s) 306
BccI CCATC 4 cut(s) 13, 436, 806, 1146
BcoDI GTCTC 1 cut(s) 177
BfaI CTAG 5 cut(s) 84, 276, 554, 747, 963
BlnI CCTAGG 1 cut(s) 83
BlpI GCTNAGC 1 cut(s) 921
BmcAI AGTACT 1 cut(s) 1041
Bme18I GGWCC 1 cut(s) 849
BmeRI GACNNNNNGTC 1 cut(s) 734
BmgT120I GGNCC 1 cut(s) 849
BmiI GGNNCC 3 cut(s) 840, 851, 1092
BmsI GCATC 2 cut(s) 288, 670
BmtI GCTAGC 1 cut(s) 279
Bpu10I CCTNAGC 2 cut(s) 306, 1155
Bpu1102I GCTNAGC 1 cut(s) 921
BpuEI CTTGAG 2 cut(s) 239, 563
Bsa29I ATCGAT 1 cut(s) 526
BsaJI CCNNGG 4 cut(s) 83, 414, 480, 845
Bsc4I CCNNNNNNNGG 1 cut(s) 438
BseCI ATCGAT 1 cut(s) 526
BseDI CCNNGG 4 cut(s) 83, 414, 480, 845
BseGI GGATG 1 cut(s) 428
BseLI CCNNNNNNNGG 1 cut(s) 438
BseMII CTCAG 2 cut(s) 297, 1146
BseRI GAGGAG 1 cut(s) 550
BseSI GKGCMC 1 cut(s) 781
Bsh1236I CGCG 2 cut(s) 80, 566
BshVI ATCGAT 1 cut(s) 526
BsiHKAI GWGCWC 1 cut(s) 869
BsiSI CCGG 1 cut(s) 156
BslI CCNNNNNNNGG 1 cut(s) 438
BsmAI GTCTC 1 cut(s) 177
BsmBI CGTCTC 1 cut(s) 177
BsmI GAATGC 1 cut(s) 266
Bsp1286I GDGCHC 2 cut(s) 781, 869
Bsp143I GATC 2 cut(s) 382, 1001
Bsp1720I GCTNAGC 1 cut(s) 921
Bsp19I CCATGG 1 cut(s) 845
BspACI CCGC 3 cut(s) 242, 566, 640
BspCNI CTCAG 2 cut(s) 298, 1147
BspDI ATCGAT 1 cut(s) 526
BspFNI CGCG 2 cut(s) 80, 566
BspHI TCATGA 1 cut(s) 499
BspLI GGNNCC 3 cut(s) 840, 851, 1092
BspOI GCTAGC 1 cut(s) 279
BspPI GGATC 2 cut(s) 390, 1009
BspQI GCTCTTC 1 cut(s) 857
BssECI CCNNGG 4 cut(s) 83, 414, 480, 845
BssMI GATC 2 cut(s) 382, 1001
BssT1I CCWWGG 3 cut(s) 83, 480, 845
Bst4CI ACNGT 1 cut(s) 934
Bst6I CTCTTC 1 cut(s) 857
BstC8I GCNNGC 4 cut(s) 277, 631, 1115, 1177
BstDEI CTNAG 4 cut(s) 306, 858, 921, 1155
BstDSI CCRYGG 1 cut(s) 845
BstF5I GGATG 1 cut(s) 428
BstFNI CGCG 2 cut(s) 80, 566
BstHHI GCGC 1 cut(s) 82
BstKTI GATC 2 cut(s) 385, 1004
BstMAI GTCTC 1 cut(s) 177
BstMBI GATC 2 cut(s) 382, 1001
BstMWI GCNNNNNNNGC 3 cut(s) 131, 776, 1133
BstSLI GKGCMC 1 cut(s) 781
BstUI CGCG 2 cut(s) 80, 566
Bsu15I ATCGAT 1 cut(s) 526
BsuTUI ATCGAT 1 cut(s) 526
BtgI CCRYGG 1 cut(s) 845
BtsCI GGATG 1 cut(s) 428
Cac8I GCNNGC 4 cut(s) 277, 631, 1115, 1177
CciI TCATGA 1 cut(s) 499
CfoI GCGC 1 cut(s) 82
Cfr13I GGNCC 1 cut(s) 849
ClaI ATCGAT 1 cut(s) 526
CseI GACGC 2 cut(s) 86, 482
Csp6I GTAC 1 cut(s) 1040
CviAII CATG 4 cut(s) 61, 298, 500, 846
CviQI GTAC 1 cut(s) 1040
DdeI CTNAG 4 cut(s) 306, 858, 921, 1155
DpnI GATC 2 cut(s) 384, 1003
DpnII GATC 2 cut(s) 382, 1001
DriI GACNNNNNGTC 1 cut(s) 734
Eam1104I CTCTTC 1 cut(s) 857
Eam1105I GACNNNNNGTC 1 cut(s) 734
EarI CTCTTC 1 cut(s) 857
Eco130I CCWWGG 3 cut(s) 83, 480, 845
Eco47I GGWCC 1 cut(s) 849
Eco57I CTGAAG 4 cut(s) 147, 156, 1002, 1152
EcoRI GAATTC 2 cut(s) 245, 571
EcoT14I CCWWGG 3 cut(s) 83, 480, 845
EcoT22I ATGCAT 1 cut(s) 266
ErhI CCWWGG 3 cut(s) 83, 480, 845
Esp3I CGTCTC 1 cut(s) 177
FaeI CATG 4 cut(s) 64, 301, 503, 849
FalI AAGNNNNNCTT 2 cut(s) 151, 183
FatI CATG 4 cut(s) 60, 297, 499, 845
FblI GTMKAC 1 cut(s) 727
FokI GGATG 1 cut(s) 415
FspBI CTAG 5 cut(s) 84, 276, 554, 747, 963
GlaI GCGC 1 cut(s) 81
HapII CCGG 1 cut(s) 156
HgaI GACGC 2 cut(s) 86, 482
HhaI GCGC 1 cut(s) 82
Hin1II CATG 4 cut(s) 64, 301, 503, 849
Hin6I GCGC 1 cut(s) 80
HinP1I GCGC 1 cut(s) 80
HinfI GANTC 2 cut(s) 284, 469
HpaII CCGG 1 cut(s) 156
HphI GGTGA 6 cut(s) 59, 417, 567, 708, 730, 966
Hpy166II GTNNAC 1 cut(s) 728
Hpy188I TCNGA 1 cut(s) 149
Hpy188III TCNNGA 6 cut(s) 184, 218, 386, 500, 904, 1154
Hpy8I GTNNAC 1 cut(s) 728
Hpy99I CGWCG 3 cut(s) 11, 80, 498
HpyAV CCTTC 4 cut(s) 177, 637, 1051, 1081
HpyCH4III ACNGT 1 cut(s) 934
HpyCH4IV ACGT 2 cut(s) 713, 787
HpyCH4V TGCA 4 cut(s) 264, 1035, 1127, 1148
HpyF10VI GCNNNNNNNGC 3 cut(s) 131, 776, 1133
HpyF3I CTNAG 4 cut(s) 306, 858, 921, 1155
HpySE526I ACGT 2 cut(s) 713, 787
Hsp92II CATG 4 cut(s) 64, 301, 503, 849
HspAI GCGC 1 cut(s) 80
Kzo9I GATC 2 cut(s) 382, 1001
LguI GCTCTTC 1 cut(s) 857
LmnI GCTCC 2 cut(s) 838, 1090
LpnPI CCDG 7 cut(s) 169, 342, 615, 866, 889, 1143, 1167
LweI GCATC 2 cut(s) 288, 670
MaeI CTAG 5 cut(s) 84, 276, 554, 747, 963
MaeII ACGT 2 cut(s) 713, 787
MaeIII GTNAC 7 cut(s) 332, 423, 675, 709, 714, 736, 943
MalI GATC 2 cut(s) 384, 1003
MboI GATC 2 cut(s) 382, 1001
MboII GAAGA 8 cut(s) 23, 62, 149, 301, 306, 335, 559, 874
MhlI GDGCHC 2 cut(s) 781, 869
MluCI AATT 9 cut(s) 54, 196, 211, 245, 473, 571, 828, 884, 1061
MlyI GAGTC 2 cut(s) 293, 478
MmeI TCCRAC 2 cut(s) 603, 679
Mph1103I ATGCAT 1 cut(s) 266
MseI TTAA 6 cut(s) 30, 267, 996, 1050, 1064, 1161
MslI CAYNNNNRTG 1 cut(s) 1143
MspI CCGG 1 cut(s) 156
Mva1269I GAATGC 1 cut(s) 266
MvnI CGCG 2 cut(s) 80, 566
MwoI GCNNNNNNNGC 3 cut(s) 131, 776, 1133
NcoI CCATGG 1 cut(s) 845
NdeII GATC 2 cut(s) 382, 1001
NheI GCTAGC 1 cut(s) 275
NlaIII CATG 4 cut(s) 64, 301, 503, 849
NlaIV GGNNCC 3 cut(s) 840, 851, 1092
NmuCI GTSAC 4 cut(s) 423, 714, 736, 943
NsiI ATGCAT 1 cut(s) 266
PagI TCATGA 1 cut(s) 499
PciSI GCTCTTC 1 cut(s) 857
PctI GAATGC 1 cut(s) 266
PleI GAGTC 2 cut(s) 292, 477
PpsI GAGTC 2 cut(s) 292, 477
PspN4I GGNNCC 3 cut(s) 840, 851, 1092
PspPI GGNCC 1 cut(s) 849
RsaI GTAC 1 cut(s) 1041
RsaNI GTAC 1 cut(s) 1040
RseI CAYNNNNRTG 1 cut(s) 1143
SapI GCTCTTC 1 cut(s) 857
SaqAI TTAA 6 cut(s) 30, 267, 996, 1050, 1064, 1161
Sau3AI GATC 2 cut(s) 382, 1001
Sau96I GGNCC 1 cut(s) 849
ScaI AGTACT 1 cut(s) 1041
SchI GAGTC 2 cut(s) 293, 478
SduI GDGCHC 2 cut(s) 781, 869
SfaNI GCATC 2 cut(s) 288, 670
SinI GGWCC 1 cut(s) 849
SmiMI CAYNNNNRTG 1 cut(s) 1143
SmlI CTYRAG 2 cut(s) 218, 542
SmoI CTYRAG 2 cut(s) 218, 542
Sse9I AATT 9 cut(s) 54, 196, 211, 245, 473, 571, 828, 884, 1061
SsiI CCGC 3 cut(s) 242, 566, 640
SspMI CTAG 5 cut(s) 84, 276, 554, 747, 963
StyI CCWWGG 3 cut(s) 83, 480, 845
TaaI ACNGT 1 cut(s) 934
TaiI ACGT 2 cut(s) 716, 790
TaqI TCGA 9 cut(s) 42, 75, 282, 287, 508, 526, 533, 594, 936
TaqII GACCGA 1 cut(s) 406
TasI AATT 9 cut(s) 54, 196, 211, 245, 473, 571, 828, 884, 1061
TatI WGTACW 1 cut(s) 1039
Tru1I TTAA 6 cut(s) 30, 267, 996, 1050, 1064, 1161
Tru9I TTAA 6 cut(s) 30, 267, 996, 1050, 1064, 1161
TseFI GTSAC 4 cut(s) 423, 714, 736, 943
Tsp45I GTSAC 4 cut(s) 423, 714, 736, 943
TspDTI ATGAA 4 cut(s) 334, 470, 516, 1100
TspGWI ACGGA 2 cut(s) 245, 351
VpaK11BI GGWCC 1 cut(s) 849
XapI RAATTY 3 cut(s) 245, 571, 884
XmaJI CCTAGG 1 cut(s) 83
XmiI GTMKAC 1 cut(s) 727
XspI CTAG 5 cut(s) 84, 276, 554, 747, 963
ZrmI AGTACT 1 cut(s) 1041
Zsp2I ATGCAT 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.