RchiOBHm_Chr1g0375251

Cell cycle regulated microtubule associated protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
62733824 .. 62736000
2177 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59899

Sequence Viewer

Length: 885 bp
ATGGACGACGAAGAAATGATGGAGTTTGTTAAGGAGGCTTTCGAGGGTGAAGAAATTGACATGGATTATGAGTTCGACGCGCCTAGGTTCTATGATTTTACAACGCTTGAAACCGATTGGGAGGCTGAAGTGGCTGAAGATTGGTTCAGATACGCCGGAAGTTATCCTTCGTCTCCTTTTATCGTGAGATTGTTGAATTGGCACAAAGGCAATTCTCTTGAGGAAACAACGGACACCTCTGCGGAATTCAAAGATGTTGAATGCATTAAATGTGCTAGCATCGAGTCGAAGAATAGCATGGAAGCTGAGGGTTCTTCAATAGAAGATGATAGTAACGGAGGAGTAAAATGCTCTAATAAAATGGATCAAGATACTCTAAAAGCTAAAACCAAGTCCTCGGTCAAGTCACCATCCATATCAAGGAGTTCAACTTTGATGAAACCCACAGCGAGTCAATTAGCCAAGGCAAAACAGCGTCGTCATGAAGTTCGACAATCTCACTCCAATCGATTATCGAGGAGGCTTGAGAAGAAGCTAGGGAAAGTCGCGGAGAATTCACCGAGTTCTCCATTATTCGATAGTGTAGCAACTAAAAGACAGAAGTTGGAGGCTGGCTATGTGCGGAAGGTTTCTCAACTTACGCATCAACCTCTTTGGTTACACAAGTCGCCAAAAAAGGTTGGAACTGCTGTAACGTCACCAAATGGTAGACCTAAAGTCACCATTCCTAGAGAACCAAACTTGGAAACAGCACAAAGGGCACAAAGACGTAGGTATAAGACTATTGCGAAAGATGGAGAACAAGCAAAAATTATCAAGGAGCCTCCATGGACCCTGCCTAAGAAGAGCACACCACAAGCAAAAGAATTTCAAGTATTCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

294

Amino Acids

33.44

Weight (kDa)

8.74

Isoelectric Point (pI)

58.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 709
AccII CGCG 2 cut(s) 80, 548
AciI CCGC 3 cut(s) 242, 548, 622
AclWI GGATC 1 cut(s) 372
AcsI RAATTY 3 cut(s) 245, 553, 866
AcuI CTGAAG 2 cut(s) 147, 156
AfiI CCNNNNNNNGG 1 cut(s) 420
AgsI TTSAA 7 cut(s) 110, 196, 250, 260, 318, 429, 872
AhdI GACNNNNNGTC 1 cut(s) 716
AloI GAACNNNNNNTCC 2 cut(s) 56, 88
AluBI AGCT 3 cut(s) 305, 383, 535
AluI AGCT 3 cut(s) 305, 383, 535
Alw21I GWGCWC 1 cut(s) 851
Alw26I GTCTC 1 cut(s) 177
AlwI GGATC 1 cut(s) 372
ApoI RAATTY 3 cut(s) 245, 553, 866
AspA2I CCTAGG 1 cut(s) 83
AspLEI GCGC 1 cut(s) 82
AspS9I GGNCC 1 cut(s) 831
AsuHPI GGTGA 5 cut(s) 59, 399, 549, 690, 712
AsuNHI GCTAGC 1 cut(s) 275
AvaII GGWCC 1 cut(s) 831
AvrII CCTAGG 1 cut(s) 83
BaeGI GKGCMC 1 cut(s) 763
Bbv12I GWGCWC 1 cut(s) 851
BbvCI CCTCAGC 1 cut(s) 306
BccI CCATC 3 cut(s) 13, 418, 788
BcoDI GTCTC 1 cut(s) 177
BfaI CTAG 4 cut(s) 84, 276, 536, 729
BlnI CCTAGG 1 cut(s) 83
Bme18I GGWCC 1 cut(s) 831
BmeRI GACNNNNNGTC 1 cut(s) 716
BmgT120I GGNCC 1 cut(s) 831
BmiI GGNNCC 2 cut(s) 822, 833
BmsI GCATC 2 cut(s) 288, 652
BmtI GCTAGC 1 cut(s) 279
Bpu10I CCTNAGC 1 cut(s) 306
BpuEI CTTGAG 2 cut(s) 239, 545
Bsa29I ATCGAT 1 cut(s) 508
BsaJI CCNNGG 4 cut(s) 83, 396, 462, 827
Bsc4I CCNNNNNNNGG 1 cut(s) 420
BseCI ATCGAT 1 cut(s) 508
BseDI CCNNGG 4 cut(s) 83, 396, 462, 827
BseGI GGATG 1 cut(s) 410
BseLI CCNNNNNNNGG 1 cut(s) 420
BseMII CTCAG 1 cut(s) 297
BseRI GAGGAG 2 cut(s) 354, 532
BseSI GKGCMC 1 cut(s) 763
Bsh1236I CGCG 2 cut(s) 80, 548
BshVI ATCGAT 1 cut(s) 508
BsiHKAI GWGCWC 1 cut(s) 851
BsiSI CCGG 1 cut(s) 156
BslI CCNNNNNNNGG 1 cut(s) 420
BsmAI GTCTC 1 cut(s) 177
BsmBI CGTCTC 1 cut(s) 177
BsmI GAATGC 1 cut(s) 266
Bsp1286I GDGCHC 2 cut(s) 763, 851
Bsp143I GATC 1 cut(s) 364
Bsp19I CCATGG 1 cut(s) 827
BspACI CCGC 3 cut(s) 242, 548, 622
BspCNI CTCAG 1 cut(s) 298
BspDI ATCGAT 1 cut(s) 508
BspFNI CGCG 2 cut(s) 80, 548
BspHI TCATGA 1 cut(s) 481
BspLI GGNNCC 2 cut(s) 822, 833
BspOI GCTAGC 1 cut(s) 279
BspPI GGATC 1 cut(s) 372
BspQI GCTCTTC 1 cut(s) 839
BssECI CCNNGG 4 cut(s) 83, 396, 462, 827
BssMI GATC 1 cut(s) 364
BssT1I CCWWGG 3 cut(s) 83, 462, 827
Bst6I CTCTTC 1 cut(s) 839
BstC8I GCNNGC 2 cut(s) 277, 613
BstDEI CTNAG 2 cut(s) 306, 840
BstDSI CCRYGG 1 cut(s) 827
BstF5I GGATG 1 cut(s) 410
BstFNI CGCG 2 cut(s) 80, 548
BstHHI GCGC 1 cut(s) 82
BstKTI GATC 1 cut(s) 367
BstMAI GTCTC 1 cut(s) 177
BstMBI GATC 1 cut(s) 364
BstMWI GCNNNNNNNGC 2 cut(s) 131, 758
BstSLI GKGCMC 1 cut(s) 763
BstUI CGCG 2 cut(s) 80, 548
Bsu15I ATCGAT 1 cut(s) 508
BsuTUI ATCGAT 1 cut(s) 508
BtgI CCRYGG 1 cut(s) 827
BtsCI GGATG 1 cut(s) 410
Cac8I GCNNGC 2 cut(s) 277, 613
CciI TCATGA 1 cut(s) 481
CfoI GCGC 1 cut(s) 82
Cfr13I GGNCC 1 cut(s) 831
ClaI ATCGAT 1 cut(s) 508
CseI GACGC 2 cut(s) 86, 464
CviAII CATG 4 cut(s) 61, 298, 482, 828
DdeI CTNAG 2 cut(s) 306, 840
DpnI GATC 1 cut(s) 366
DpnII GATC 1 cut(s) 364
DriI GACNNNNNGTC 1 cut(s) 716
Eam1104I CTCTTC 1 cut(s) 839
Eam1105I GACNNNNNGTC 1 cut(s) 716
EarI CTCTTC 1 cut(s) 839
Eco130I CCWWGG 3 cut(s) 83, 462, 827
Eco47I GGWCC 1 cut(s) 831
Eco57I CTGAAG 2 cut(s) 147, 156
EcoRI GAATTC 2 cut(s) 245, 553
EcoT14I CCWWGG 3 cut(s) 83, 462, 827
EcoT22I ATGCAT 1 cut(s) 266
ErhI CCWWGG 3 cut(s) 83, 462, 827
Esp3I CGTCTC 1 cut(s) 177
FaeI CATG 4 cut(s) 64, 301, 485, 831
FalI AAGNNNNNCTT 2 cut(s) 151, 183
FatI CATG 4 cut(s) 60, 297, 481, 827
FblI GTMKAC 1 cut(s) 709
FokI GGATG 1 cut(s) 397
FspBI CTAG 4 cut(s) 84, 276, 536, 729
GlaI GCGC 1 cut(s) 81
HapII CCGG 1 cut(s) 156
HgaI GACGC 2 cut(s) 86, 464
HhaI GCGC 1 cut(s) 82
Hin1II CATG 4 cut(s) 64, 301, 485, 831
Hin6I GCGC 1 cut(s) 80
HinP1I GCGC 1 cut(s) 80
HinfI GANTC 2 cut(s) 284, 451
HpaII CCGG 1 cut(s) 156
HphI GGTGA 5 cut(s) 59, 399, 549, 690, 712
Hpy166II GTNNAC 1 cut(s) 710
Hpy188I TCNGA 1 cut(s) 149
Hpy188III TCNNGA 4 cut(s) 184, 218, 368, 482
Hpy8I GTNNAC 1 cut(s) 710
Hpy99I CGWCG 3 cut(s) 11, 80, 480
HpyAV CCTTC 2 cut(s) 177, 619
HpyCH4IV ACGT 2 cut(s) 695, 769
HpyCH4V TGCA 1 cut(s) 264
HpyF10VI GCNNNNNNNGC 2 cut(s) 131, 758
HpyF3I CTNAG 2 cut(s) 306, 840
HpySE526I ACGT 2 cut(s) 695, 769
Hsp92II CATG 4 cut(s) 64, 301, 485, 831
HspAI GCGC 1 cut(s) 80
Kzo9I GATC 1 cut(s) 364
LguI GCTCTTC 1 cut(s) 839
LmnI GCTCC 1 cut(s) 820
LpnPI CCDG 3 cut(s) 169, 597, 848
LweI GCATC 2 cut(s) 288, 652
MaeI CTAG 4 cut(s) 84, 276, 536, 729
MaeII ACGT 2 cut(s) 695, 769
MaeIII GTNAC 6 cut(s) 332, 405, 657, 691, 696, 718
MalI GATC 1 cut(s) 366
MboI GATC 1 cut(s) 364
MboII GAAGA 8 cut(s) 23, 62, 149, 301, 306, 335, 541, 856
MhlI GDGCHC 2 cut(s) 763, 851
MluCI AATT 8 cut(s) 54, 196, 211, 245, 455, 553, 810, 866
MlyI GAGTC 2 cut(s) 293, 460
MmeI TCCRAC 2 cut(s) 585, 661
Mph1103I ATGCAT 1 cut(s) 266
MseI TTAA 2 cut(s) 30, 267
MspI CCGG 1 cut(s) 156
Mva1269I GAATGC 1 cut(s) 266
MvnI CGCG 2 cut(s) 80, 548
MwoI GCNNNNNNNGC 2 cut(s) 131, 758
NcoI CCATGG 1 cut(s) 827
NdeII GATC 1 cut(s) 364
NheI GCTAGC 1 cut(s) 275
NlaIII CATG 4 cut(s) 64, 301, 485, 831
NlaIV GGNNCC 2 cut(s) 822, 833
NmuCI GTSAC 3 cut(s) 405, 696, 718
NsiI ATGCAT 1 cut(s) 266
PagI TCATGA 1 cut(s) 481
PciSI GCTCTTC 1 cut(s) 839
PctI GAATGC 1 cut(s) 266
PleI GAGTC 2 cut(s) 292, 459
PpsI GAGTC 2 cut(s) 292, 459
PspN4I GGNNCC 2 cut(s) 822, 833
PspPI GGNCC 1 cut(s) 831
SapI GCTCTTC 1 cut(s) 839
SaqAI TTAA 2 cut(s) 30, 267
Sau3AI GATC 1 cut(s) 364
Sau96I GGNCC 1 cut(s) 831
SchI GAGTC 2 cut(s) 293, 460
SduI GDGCHC 2 cut(s) 763, 851
SfaNI GCATC 2 cut(s) 288, 652
SinI GGWCC 1 cut(s) 831
SmlI CTYRAG 2 cut(s) 218, 524
SmoI CTYRAG 2 cut(s) 218, 524
Sse9I AATT 8 cut(s) 54, 196, 211, 245, 455, 553, 810, 866
SsiI CCGC 3 cut(s) 242, 548, 622
SspMI CTAG 4 cut(s) 84, 276, 536, 729
StyI CCWWGG 3 cut(s) 83, 462, 827
TaiI ACGT 2 cut(s) 698, 772
TaqI TCGA 8 cut(s) 42, 75, 282, 287, 490, 508, 515, 576
TaqII GACCGA 1 cut(s) 388
TasI AATT 8 cut(s) 54, 196, 211, 245, 455, 553, 810, 866
Tru1I TTAA 2 cut(s) 30, 267
Tru9I TTAA 2 cut(s) 30, 267
TseFI GTSAC 3 cut(s) 405, 696, 718
Tsp45I GTSAC 3 cut(s) 405, 696, 718
TspDTI ATGAA 3 cut(s) 452, 498, 868
TspGWI ACGGA 2 cut(s) 245, 351
VpaK11BI GGWCC 1 cut(s) 831
XapI RAATTY 3 cut(s) 245, 553, 866
XmaJI CCTAGG 1 cut(s) 83
XmiI GTMKAC 1 cut(s) 709
XspI CTAG 4 cut(s) 84, 276, 536, 729
Zsp2I ATGCAT 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.