MD07G1259000.v1.1

Cell cycle regulated microtubule associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0006192
Physical Location & Seq
Forward (+)
32502297 .. 32502590
294 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1259000.v1.1.491

Sequence Viewer

Length: 294 bp
ATGGTGGAGTTCGTTAGGGAGGCTTTCGAGGGGGGAGAAATTGACATGGACCATGAATTCGATGCGCCCAAGTTCTTCGATTTCACTCGGCCGGAGACTGGTCTGGAGGCCGAGGAGGCGGAGGAATGGTTCCTGTCAGGAGGTTATCAACCCTCGCGTAAGCGATTTCAAAAACATTGGTTTGCTGTTCTCCTAGTCATGTCCCAAAACAACGAATTTTTTGATCATTTTCTATGCTTACCACATCAATTGATCATCGATTTTGCTAATTCATTTCAATATCTGTATGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPX2_importin

Protein Analysis

98

Amino Acids

11.61

Weight (kDa)

4.52

Isoelectric Point (pI)

42.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 157
AciI CCGC 1 cut(s) 119
AcoI YGGCCR 1 cut(s) 89
AcsI RAATTY 2 cut(s) 56, 215
AfiI CCNNNNNNNGG 1 cut(s) 98
AgsI TTSAA 2 cut(s) 170, 278
AloI GAACNNNNNNTCC 2 cut(s) 113, 145
Alw26I GTCTC 1 cut(s) 89
AoxI GGCC 2 cut(s) 89, 108
ApoI RAATTY 2 cut(s) 56, 215
ArsI GACNNNNNNTTYG 2 cut(s) 41, 73
AspLEI GCGC 1 cut(s) 67
AspS9I GGNCC 1 cut(s) 49
AvaII GGWCC 1 cut(s) 49
BclI TGATCA 2 cut(s) 223, 252
BcoDI GTCTC 1 cut(s) 89
BfaI CTAG 1 cut(s) 194
BglI GCCNNNNNGGC 1 cut(s) 116
Bme18I GGWCC 1 cut(s) 49
BmgT120I GGNCC 1 cut(s) 49
BmiI GGNNCC 1 cut(s) 131
BmsI GCATC 1 cut(s) 52
BpmI CTGGAG 1 cut(s) 125
Bsa29I ATCGAT 1 cut(s) 258
BsaJI CCNNGG 1 cut(s) 111
BsaXI ACNNNNNCTCC 2 cut(s) 113, 143
Bsc4I CCNNNNNNNGG 1 cut(s) 98
Bse1I ACTGG 1 cut(s) 103
BseCI ATCGAT 1 cut(s) 258
BseDI CCNNGG 1 cut(s) 111
BseLI CCNNNNNNNGG 1 cut(s) 98
BseNI ACTGG 1 cut(s) 103
BseRI GAGGAG 1 cut(s) 128
BseX3I CGGCCG 1 cut(s) 89
Bsh1236I CGCG 1 cut(s) 157
Bsh1285I CGRYCG 1 cut(s) 92
BshFI GGCC 2 cut(s) 91, 110
BshVI ATCGAT 1 cut(s) 258
BsiEI CGRYCG 1 cut(s) 92
BsiSI CCGG 1 cut(s) 92
BslFI GGGAC 1 cut(s) 187
BslI CCNNNNNNNGG 1 cut(s) 98
BsmAI GTCTC 1 cut(s) 89
BsmFI GGGAC 1 cut(s) 187
BsnI GGCC 2 cut(s) 91, 110
Bsp143I GATC 2 cut(s) 223, 252
BspACI CCGC 1 cut(s) 119
BspANI GGCC 2 cut(s) 91, 110
BspDI ATCGAT 1 cut(s) 258
BspFNI CGCG 1 cut(s) 157
BspLI GGNNCC 1 cut(s) 131
BsrI ACTGG 1 cut(s) 103
BssECI CCNNGG 1 cut(s) 111
BssMI GATC 2 cut(s) 223, 252
BstFNI CGCG 1 cut(s) 157
BstHHI GCGC 1 cut(s) 67
BstKTI GATC 2 cut(s) 226, 255
BstMAI GTCTC 1 cut(s) 89
BstMBI GATC 2 cut(s) 223, 252
BstMCI CGRYCG 1 cut(s) 92
BstMWI GCNNNNNNNGC 1 cut(s) 116
BstUI CGCG 1 cut(s) 157
BstZI CGGCCG 1 cut(s) 89
Bsu15I ATCGAT 1 cut(s) 258
BsuRI GGCC 2 cut(s) 91, 110
BsuTUI ATCGAT 1 cut(s) 258
CfoI GCGC 1 cut(s) 67
Cfr13I GGNCC 1 cut(s) 49
ClaI ATCGAT 1 cut(s) 258
CspCI CAANNNNNGTGG 2 cut(s) 231, 266
CviAII CATG 3 cut(s) 46, 53, 199
CviJI RGCY 3 cut(s) 23, 91, 110
CviKI_1 RGCY 3 cut(s) 23, 91, 110
DpnI GATC 2 cut(s) 225, 254
DpnII GATC 2 cut(s) 223, 252
EaeI YGGCCR 1 cut(s) 89
EagI CGGCCG 1 cut(s) 89
EciI GGCGGA 1 cut(s) 134
EclXI CGGCCG 1 cut(s) 89
Eco47I GGWCC 1 cut(s) 49
Eco52I CGGCCG 1 cut(s) 89
EcoRI GAATTC 1 cut(s) 56
FaeI CATG 3 cut(s) 49, 56, 202
FaiI YATR 5 cut(s) 47, 54, 200, 235, 288
FaqI GGGAC 1 cut(s) 187
FatI CATG 3 cut(s) 45, 52, 198
FbaI TGATCA 2 cut(s) 223, 252
FspBI CTAG 1 cut(s) 194
GlaI GCGC 1 cut(s) 66
GsuI CTGGAG 1 cut(s) 125
HaeIII GGCC 2 cut(s) 91, 110
HapII CCGG 1 cut(s) 92
HhaI GCGC 1 cut(s) 67
Hin1II CATG 3 cut(s) 49, 56, 202
Hin6I GCGC 1 cut(s) 65
HinP1I GCGC 1 cut(s) 65
HpaII CCGG 1 cut(s) 92
Hpy188III TCNNGA 2 cut(s) 104, 138
HpyF10VI GCNNNNNNNGC 1 cut(s) 116
Hsp92II CATG 3 cut(s) 49, 56, 202
HspAI GCGC 1 cut(s) 65
Ksp22I TGATCA 2 cut(s) 223, 252
Kzo9I GATC 2 cut(s) 223, 252
LpnPI CCDG 5 cut(s) 84, 89, 105, 123, 146
LweI GCATC 1 cut(s) 52
MaeI CTAG 1 cut(s) 194
MalI GATC 2 cut(s) 225, 254
MboI GATC 2 cut(s) 223, 252
MboII GAAGA 1 cut(s) 67
MfeI CAATTG 1 cut(s) 248
MluCI AATT 5 cut(s) 39, 56, 215, 248, 268
MnlI CCTC 8 cut(s) 13, 22, 100, 106, 109, 115, 134, 163
MspI CCGG 1 cut(s) 92
MunI CAATTG 1 cut(s) 248
MvnI CGCG 1 cut(s) 157
MwoI GCNNNNNNNGC 1 cut(s) 116
NdeII GATC 2 cut(s) 223, 252
NlaIII CATG 3 cut(s) 49, 56, 202
NlaIV GGNNCC 1 cut(s) 131
NmeAIII GCCGAG 2 cut(s) 67, 136
PspN4I GGNNCC 1 cut(s) 131
PspPI GGNCC 1 cut(s) 49
Sau3AI GATC 2 cut(s) 223, 252
Sau96I GGNCC 1 cut(s) 49
SetI ASST 1 cut(s) 145
SfaNI GCATC 1 cut(s) 52
SinI GGWCC 1 cut(s) 49
Sse9I AATT 5 cut(s) 39, 56, 215, 248, 268
SsiI CCGC 1 cut(s) 119
SspMI CTAG 1 cut(s) 194
TaqI TCGA 4 cut(s) 27, 60, 78, 258
TasI AATT 5 cut(s) 39, 56, 215, 248, 268
TspDTI ATGAA 2 cut(s) 69, 261
VpaK11BI GGWCC 1 cut(s) 49
XapI RAATTY 2 cut(s) 56, 215
XspI CTAG 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.