Rorug01G0389500

Cell cycle regulated microtubule associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0006192
Physical Location & Seq
Reverse (-)
50048152 .. 50050954
2803 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0389500.1

Sequence Viewer

Length: 690 bp
ATGTCATCCTCCTCCTTCAGTCTTCCCGATGACGACTCCGTCCCCACCGCCGGGTCAACCCGCCCCTTCGACGACGATGACTACCTCCGCTACGAGCACGACTCCGTCGTAGTAGATGACGTGTTCGCGACTGAGACAGAGGCTCCATCTCCGCCGTCGATCTTCGCTGCCGGATTGGACGATCCGATTCTTCCGCCTCCGTCCGAGATGCTGCCGGAGGAGGGCTCCGCTCTCAGAGAATGGAGGAGGCAGAATGCAATTCAGCTTGCGGAGAAGGAGAAGAGAGAAAAGGAGTTATTGAGCCAAATCATCGAGGAAGCTGAAGATTTCAAGGTTGAATTCTACCTGAAGAGGAAGATCACTTCTGAGAATAACAAAGCTGCTAACAGGGAAAAAGAGAAGATGTTTGTTGCCAGTCAAGAGAAGTTTCATGCTGAGGTAGACAAGAACTACTGGAAGGCAGTTGCAGATCTCATTCCCAATGAGGTGCCAGCAATAGAGAAGAGAGGGAAGAAGGATCAAGAAAAGAAGCCTTCCATTGTTGTTGTGCAAGGTCCAAAACCTGGTAAGCCAACTGAGCTCTCGAGGATGAGGCAGATACTTCTAAAATTGAAGCATAATACGCCTCCTCACCTAAAGCCTTCGCCACCAGCACTAGCCATTGCCCCTGAGGCTATAGCTGCTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPX2_importin

Protein Analysis

229

Amino Acids

25.65

Weight (kDa)

5.23

Isoelectric Point (pI)

60.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Clathrin_lg_ch PF01086 72 - 176 5.4e-09 Clathrin light chain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 38
AccB1I GGYRCC 1 cut(s) 487
AccB7I CCANNNNNTGG 1 cut(s) 563
AccBSI CCGCTC 1 cut(s) 230
AccI GTMKAC 1 cut(s) 441
AccII CGCG 1 cut(s) 128
AciI CCGC 7 cut(s) 48, 61, 88, 152, 194, 228, 269
AclWI GGATC 2 cut(s) 176, 525
AcsI RAATTY 1 cut(s) 338
AcuI CTGAAG 2 cut(s) 342, 368
AfiI CCNNNNNNNGG 4 cut(s) 50, 51, 221, 563
AflIII ACRYGT 1 cut(s) 120
AgsI TTSAA 3 cut(s) 331, 338, 613
AjiI CACGTC 1 cut(s) 121
AjnI CCWGG 1 cut(s) 562
AluBI AGCT 5 cut(s) 265, 320, 380, 580, 680
AluI AGCT 5 cut(s) 265, 320, 380, 580, 680
Alw21I GWGCWC 2 cut(s) 99, 582
Alw26I GTCTC 1 cut(s) 128
AlwI GGATC 2 cut(s) 176, 525
Ama87I CYCGRG 1 cut(s) 583
ApeKI GCWGC 5 cut(s) 167, 211, 380, 680, 683
ApoI RAATTY 1 cut(s) 338
AspS9I GGNCC 1 cut(s) 554
AsuC2I CCSGG 1 cut(s) 52
AsuHPI GGTGA 1 cut(s) 623
AvaI CYCGRG 1 cut(s) 583
AvaII GGWCC 1 cut(s) 554
AxyI CCTNAGG 1 cut(s) 669
BanI GGYRCC 1 cut(s) 487
BanII GRGCYC 2 cut(s) 227, 582
BbsI GAAGAC 1 cut(s) 14
Bbv12I GWGCWC 2 cut(s) 99, 582
BbvCI CCTCAGC 1 cut(s) 435
BbvI GCAGC 5 cut(s) 154, 198, 367, 667, 670
BccI CCATC 1 cut(s) 154
BceAI ACGGC 1 cut(s) 139
BciT130I CCWGG 1 cut(s) 564
BcnI CCSGG 1 cut(s) 52
BcoDI GTCTC 1 cut(s) 128
BfaI CTAG 1 cut(s) 656
BfmI CTRYAG 1 cut(s) 675
BglI GCCNNNNNGGC 1 cut(s) 671
BglII AGATCT 1 cut(s) 469
BisI GCNGC 5 cut(s) 168, 212, 381, 681, 684
BlsI GCNGC 5 cut(s) 169, 213, 382, 682, 685
Bme1390I CCNGG 2 cut(s) 52, 564
Bme18I GGWCC 1 cut(s) 554
BmeT110I CYCGRG 1 cut(s) 583
BmgBI CACGTC 1 cut(s) 121
BmgT120I GGNCC 1 cut(s) 554
BmiI GGNNCC 3 cut(s) 144, 226, 489
BmrFI CCNGG 2 cut(s) 52, 564
BmsI GCATC 1 cut(s) 198
BpiI GAAGAC 1 cut(s) 14
BplI GAGNNNNNCTC 4 cut(s) 86, 118, 209, 241
Bpu10I CCTNAGC 1 cut(s) 435
BpuMI CCSGG 1 cut(s) 52
BsaXI ACNNNNNCTCC 2 cut(s) 127, 157
Bsc4I CCNNNNNNNGG 4 cut(s) 50, 51, 221, 563
Bse1I ACTGG 2 cut(s) 414, 458
Bse21I CCTNAGG 1 cut(s) 669
Bse3DI GCAATG 1 cut(s) 660
BseBI CCWGG 1 cut(s) 564
BseGI GGATG 2 cut(s) 5, 594
BseLI CCNNNNNNNGG 4 cut(s) 50, 51, 221, 563
BseMI GCAATG 1 cut(s) 660
BseMII CTCAG 6 cut(s) 123, 247, 357, 426, 567, 660
BseNI ACTGG 2 cut(s) 414, 458
BseRI GAGGAG 3 cut(s) 233, 259, 618
BseXI GCAGC 5 cut(s) 154, 198, 367, 667, 670
Bsh1236I CGCG 1 cut(s) 128
BshNI GGYRCC 1 cut(s) 487
BsiHKAI GWGCWC 2 cut(s) 99, 582
BsiHKCI CYCGRG 1 cut(s) 583
BsiSI CCGG 3 cut(s) 51, 171, 215
BslFI GGGAC 1 cut(s) 26
BslI CCNNNNNNNGG 4 cut(s) 50, 51, 221, 563
BsmAI GTCTC 1 cut(s) 128
BsmFI GGGAC 1 cut(s) 26
BsmI GAATGC 1 cut(s) 259
BsoBI CYCGRG 1 cut(s) 583
Bsp1286I GDGCHC 3 cut(s) 99, 227, 582
Bsp143I GATC 5 cut(s) 159, 181, 357, 469, 517
Bsp68I TCGCGA 1 cut(s) 128
BspACI CCGC 7 cut(s) 48, 61, 88, 152, 194, 228, 269
BspCNI CTCAG 6 cut(s) 124, 246, 358, 427, 568, 661
BspFNI CGCG 1 cut(s) 128
BspLI GGNNCC 3 cut(s) 144, 226, 489
BspPI GGATC 2 cut(s) 176, 525
BspT107I GGYRCC 1 cut(s) 487
BsrBI CCGCTC 1 cut(s) 230
BsrDI GCAATG 1 cut(s) 660
BsrI ACTGG 2 cut(s) 414, 458
BssMI GATC 5 cut(s) 159, 181, 357, 469, 517
Bst2UI CCWGG 1 cut(s) 564
Bst6I CTCTTC 3 cut(s) 275, 344, 497
BstC8I GCNNGC 2 cut(s) 267, 492
BstDEI CTNAG 6 cut(s) 132, 233, 366, 435, 576, 669
BstF5I GGATG 2 cut(s) 5, 594
BstFNI CGCG 1 cut(s) 128
BstKTI GATC 5 cut(s) 162, 184, 360, 472, 520
BstMAI GTCTC 1 cut(s) 128
BstMBI GATC 5 cut(s) 159, 181, 357, 469, 517
BstMWI GCNNNNNNNGC 4 cut(s) 577, 622, 671, 680
BstNI CCWGG 1 cut(s) 564
BstSCI CCNGG 2 cut(s) 50, 562
BstSFI CTRYAG 1 cut(s) 675
BstUI CGCG 1 cut(s) 128
BstV1I GCAGC 5 cut(s) 154, 198, 367, 667, 670
BstV2I GAAGAC 1 cut(s) 14
BstX2I RGATCY 1 cut(s) 469
BstYI RGATCY 1 cut(s) 469
Bsu36I CCTNAGG 1 cut(s) 669
BtrI CACGTC 1 cut(s) 121
BtsCI GGATG 2 cut(s) 5, 594
BtuMI TCGCGA 1 cut(s) 128
Cac8I GCNNGC 2 cut(s) 267, 492
Cfr13I GGNCC 1 cut(s) 554
CsiI ACCWGGT 1 cut(s) 562
CviAII CATG 1 cut(s) 431
DdeI CTNAG 6 cut(s) 132, 233, 366, 435, 576, 669
DpnI GATC 5 cut(s) 161, 183, 359, 471, 519
DpnII GATC 5 cut(s) 159, 181, 357, 469, 517
DrdI GACNNNNNNGTC 1 cut(s) 38
DseDI GACNNNNNNGTC 1 cut(s) 38
Eam1104I CTCTTC 3 cut(s) 275, 344, 497
EarI CTCTTC 3 cut(s) 275, 344, 497
EciI GGCGGA 2 cut(s) 141, 183
Ecl136II GAGCTC 1 cut(s) 580
Eco24I GRGCYC 2 cut(s) 227, 582
Eco47I GGWCC 1 cut(s) 554
Eco53kI GAGCTC 1 cut(s) 580
Eco57I CTGAAG 2 cut(s) 342, 368
Eco81I CCTNAGG 1 cut(s) 669
Eco88I CYCGRG 1 cut(s) 583
EcoICRI GAGCTC 1 cut(s) 580
EcoRI GAATTC 1 cut(s) 338
EcoRII CCWGG 1 cut(s) 562
EcoT38I GRGCYC 2 cut(s) 227, 582
FaeI CATG 1 cut(s) 434
FaiI YATR 3 cut(s) 432, 618, 677
FaqI GGGAC 1 cut(s) 26
FatI CATG 1 cut(s) 430
FauI CCCGC 1 cut(s) 68
FblI GTMKAC 1 cut(s) 441
Fnu4HI GCNGC 5 cut(s) 168, 212, 381, 681, 684
FokI GGATG 1 cut(s) 601
FriOI GRGCYC 2 cut(s) 227, 582
Fsp4HI GCNGC 5 cut(s) 168, 212, 381, 681, 684
FspBI CTAG 1 cut(s) 656
GluI GCNGC 5 cut(s) 168, 212, 381, 681, 684
HapII CCGG 3 cut(s) 51, 171, 215
Hin1II CATG 1 cut(s) 434
HincII GTYRAC 1 cut(s) 57
HindII GTYRAC 1 cut(s) 57
HinfI GANTC 3 cut(s) 35, 101, 187
HpaII CCGG 3 cut(s) 51, 171, 215
HphI GGTGA 1 cut(s) 623
Hpy166II GTNNAC 2 cut(s) 57, 442
Hpy188I TCNGA 4 cut(s) 186, 205, 236, 367
Hpy188III TCNNGA 5 cut(s) 26, 127, 419, 521, 583
Hpy8I GTNNAC 2 cut(s) 57, 442
Hpy99I CGWCG 4 cut(s) 74, 77, 110, 160
HpyAV CCTTC 7 cut(s) 25, 76, 268, 451, 508, 543, 651
HpyCH4IV ACGT 1 cut(s) 120
HpyCH4V TGCA 3 cut(s) 257, 467, 550
HpyF10VI GCNNNNNNNGC 4 cut(s) 577, 622, 671, 680
HpyF3I CTNAG 6 cut(s) 132, 233, 366, 435, 576, 669
HpySE526I ACGT 1 cut(s) 120
Hsp92II CATG 1 cut(s) 434
Kzo9I GATC 5 cut(s) 159, 181, 357, 469, 517
LmnI GCTCC 2 cut(s) 148, 230
Lsp1109I GCAGC 5 cut(s) 154, 198, 367, 667, 670
LweI GCATC 1 cut(s) 198
MabI ACCWGGT 1 cut(s) 562
MaeI CTAG 1 cut(s) 656
MaeII ACGT 1 cut(s) 120
MalI GATC 5 cut(s) 161, 183, 359, 471, 519
MbiI CCGCTC 1 cut(s) 230
MboI GATC 5 cut(s) 159, 181, 357, 469, 517
MflI RGATCY 1 cut(s) 469
MhlI GDGCHC 3 cut(s) 99, 227, 582
MluCI AATT 3 cut(s) 258, 338, 608
MlyI GAGTC 2 cut(s) 29, 95
MspI CCGG 3 cut(s) 51, 171, 215
MspR9I CCNGG 2 cut(s) 52, 564
Mva1269I GAATGC 1 cut(s) 259
MvaI CCWGG 1 cut(s) 564
MvnI CGCG 1 cut(s) 128
MwoI GCNNNNNNNGC 4 cut(s) 577, 622, 671, 680
NciI CCSGG 1 cut(s) 52
NdeII GATC 5 cut(s) 159, 181, 357, 469, 517
NlaIII CATG 1 cut(s) 434
NlaIV GGNNCC 3 cut(s) 144, 226, 489
NruI TCGCGA 1 cut(s) 128
PaeR7I CTCGAG 1 cut(s) 583
PcsI WCGNNNNNNNCGW 1 cut(s) 105
PctI GAATGC 1 cut(s) 259
PfeI GAWTC 1 cut(s) 187
PflFI GACNNNGTC 2 cut(s) 38, 104
PflMI CCANNNNNTGG 1 cut(s) 563
PkrI GCNGC 5 cut(s) 169, 213, 382, 682, 685
PleI GAGTC 2 cut(s) 29, 95
PpsI GAGTC 2 cut(s) 29, 95
Psp124BI GAGCTC 1 cut(s) 582
Psp6I CCWGG 1 cut(s) 562
PspGI CCWGG 1 cut(s) 562
PspN4I GGNNCC 3 cut(s) 144, 226, 489
PspPI GGNCC 1 cut(s) 554
PsuI RGATCY 1 cut(s) 469
PsyI GACNNNGTC 2 cut(s) 38, 104
RruI TCGCGA 1 cut(s) 128
SacI GAGCTC 1 cut(s) 582
SatI GCNGC 5 cut(s) 168, 212, 381, 681, 684
Sau3AI GATC 5 cut(s) 159, 181, 357, 469, 517
Sau96I GGNCC 1 cut(s) 554
SchI GAGTC 2 cut(s) 29, 95
ScrFI CCNGG 2 cut(s) 52, 564
SduI GDGCHC 3 cut(s) 99, 227, 582
SexAI ACCWGGT 1 cut(s) 562
SfaNI GCATC 1 cut(s) 198
SfcI CTRYAG 1 cut(s) 675
Sfr274I CTCGAG 1 cut(s) 583
SinI GGWCC 1 cut(s) 554
SlaI CTCGAG 1 cut(s) 583
SmlI CTYRAG 1 cut(s) 583
SmoI CTYRAG 1 cut(s) 583
Sse9I AATT 3 cut(s) 258, 338, 608
SsiI CCGC 7 cut(s) 48, 61, 88, 152, 194, 228, 269
SspMI CTAG 1 cut(s) 656
SstI GAGCTC 1 cut(s) 582
StyD4I CCNGG 2 cut(s) 50, 562
TaiI ACGT 1 cut(s) 123
TaqI TCGA 4 cut(s) 69, 158, 312, 584
TasI AATT 3 cut(s) 258, 338, 608
TfiI GAWTC 1 cut(s) 187
TseI GCWGC 5 cut(s) 167, 211, 380, 680, 683
TspDTI ATGAA 1 cut(s) 419
TspGWI ACGGA 3 cut(s) 28, 94, 189
Tth111I GACNNNGTC 2 cut(s) 38, 104
Van91I CCANNNNNTGG 1 cut(s) 563
VpaK11BI GGWCC 1 cut(s) 554
XapI RAATTY 1 cut(s) 338
XhoI CTCGAG 1 cut(s) 583
XmiI GTMKAC 1 cut(s) 441
XspI CTAG 1 cut(s) 656
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.