Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004933

Physical Location & Seq

Genomic Coordinates Forward (+)

2681996 .. 2683780

Gene Structure 1785 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G08335.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGACAGAGATATTTAGTGACACCGGGTTCAGACAGTTAACTCAAATGTTCCTGGCGATAATCTTCTTCCACACATCGGAGTACATTCTCGCCATAGCCATTCACGGAGCATCGAAAGTAACTTTAAGCTCACTCTTAATCAGCAAACACTATGCTTTAGCAATGCTAATATCAGTCCTCGAGTACATAGCCGAGATTGTTTTCTTCCCGGGGCTGAAACAACACTGGTGGATCAGCAATTTCGGTCTTACAATGATCATACTTGGAGAAATCCTTCGCAAAACCGCGATAATCACAGCAGGTAGATCGTTCACACACCTTATAAAAATTCGCCGGGAGGAGCATCATAAGCTTGTGACAGAAGGAGTGTATCAAATCATGAGGCATCCGAGTTACTCCGGGTTTCTCATTTGGTCTGTGGGAACGCAAGTAATGCTCTGTAATCCAATTTCAGCGATTGCGTTTGCGGTTGTGGTGTGGCGGTTCTTTGCAGAGAGAATACCTTATGAGGAGCATTACTTGAAGCAATTTTTTGGGAGACAGTATGTGGAGTATGCGCAGAGAGTTCCTTCTGGTGTTCCTTTTGTAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003880 GO:0004671 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006479 GO:0006481 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008213 GO:0008276 GO:0008757 GO:0009787 GO:0009788 GO:0009791 GO:0009908 GO:0009966 GO:0009968 GO:0009987 GO:0010340 GO:0010646 GO:0010648 GO:0012505 GO:0016740 GO:0016741 GO:0018410 GO:0019538 GO:0022414 GO:0023051 GO:0023057 GO:0032259 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048367 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051998 GO:0061458 GO:0065007 GO:0071704 GO:0090567 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

ICMT

Protein Analysis

197

Amino Acids

22.77

Weight (kDa)

9.24

Isoelectric Point (pI)

36.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEMT	PF04191	81 - 180	1.5e-12	Phospholipid methyltransferase
ICMT	PF04140	83 - 175	2.7e-29	Isoprenylcysteine carboxyl methyltransferase (ICMT) family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004933)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08335 AT5G08335 AT5G23320 AT5G23320
malus_domestica	MD11G1238800.v1.1 MD13G1003500.v1.1 MD16G1003900.v1.1
prunus_persica	Prupe.1G348900_v2.0.a1 Prupe.1G348900_v2.0.a1
pyrus_communis	pycom13g00300 pycom16g00210
rosa_chinensis	RchiOBHm_Chr1g0318061 RchiOBHm_Chr1g0318091 RchiOBHm_Chr1g0318101 RchiOBHm_Chr4g0446911
rosa_laevigata	RLG00000005622 RLG00000030561 RLG00000030567
rosa_multiflora	Rmu_sc0001753.1_g000011 Rmu_sc0011424.1_g000010 Rmu_sc0011539.1_g000006
rosa_roxburghii	Rroxscaffold_4G00329550 Rroxscaffold_4G00329600
rosa_rugosa	Rorug04G0375900
rosa_samantha	Rh4AG437100 Rh4BG446300 Rh4CG463600 Rh4DG444900
rosa_wichuraiana	Rw1G002410 Rw4G037400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	323
Acc16I	TGCGCA	1 cut(s)	558
Acc36I	ACCTGC	1 cut(s)	290
AccII	CGCG	1 cut(s)	287
AciI	CCGC	3 cut(s)	285, 467, 481
AclWI	GGATC	1 cut(s)	239
AcsI	RAATTY	1 cut(s)	327
AfaI	GTAC	2 cut(s)	83, 185
AfiI	CCNNNNNNNGG	1 cut(s)	76
AgsI	TTSAA	1 cut(s)	523
AjnI	CCWGG	1 cut(s)	51
AluBI	AGCT	2 cut(s)	129, 352
AluI	AGCT	2 cut(s)	129, 352
Alw26I	GTCTC	1 cut(s)	532
AlwI	GGATC	1 cut(s)	239
Ama87I	CYCGRG	2 cut(s)	179, 208
ApoI	RAATTY	1 cut(s)	327
Asp700I	GAANNNNTTC	1 cut(s)	273
AspLEI	GCGC	1 cut(s)	559
AsuC2I	CCSGG	5 cut(s)	25, 209, 210, 335, 400
AvaI	CYCGRG	2 cut(s)	179, 208
BcgI	CGANNNNNNTGC	2 cut(s)	288, 322
BciT130I	CCWGG	1 cut(s)	53
BclI	TGATCA	1 cut(s)	255
BcnI	CCSGG	5 cut(s)	25, 209, 210, 335, 400
BcoDI	GTCTC	1 cut(s)	532
BfuAI	ACCTGC	1 cut(s)	290
Bme1390I	CCNGG	6 cut(s)	25, 53, 209, 210, 335, 400
BmeT110I	CYCGRG	2 cut(s)	179, 208
BmrFI	CCNGG	6 cut(s)	25, 53, 209, 210, 335, 400
BmsI	GCATC	3 cut(s)	119, 352, 394
BpuMI	CCSGG	5 cut(s)	25, 209, 210, 335, 400
BsaJI	CCNNGG	2 cut(s)	208, 209
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
Bse1I	ACTGG	1 cut(s)	230
Bse3DI	GCAATG	1 cut(s)	168
BseBI	CCWGG	1 cut(s)	53
BseDI	CCNNGG	2 cut(s)	208, 209
BseGI	GGATG	1 cut(s)	385
BseLI	CCNNNNNNNGG	1 cut(s)	76
BseMI	GCAATG	1 cut(s)	168
BseNI	ACTGG	1 cut(s)	230
BseRI	GAGGAG	2 cut(s)	353, 524
Bsh1236I	CGCG	1 cut(s)	287
BsiHKCI	CYCGRG	2 cut(s)	179, 208
BsiSI	CCGG	4 cut(s)	24, 209, 334, 399
BslI	CCNNNNNNNGG	1 cut(s)	76
BsmAI	GTCTC	1 cut(s)	532
BsoBI	CYCGRG	2 cut(s)	179, 208
Bsp143I	GATC	3 cut(s)	231, 255, 305
BspACI	CCGC	3 cut(s)	285, 467, 481
BspFNI	CGCG	1 cut(s)	287
BspHI	TCATGA	1 cut(s)	378
BspMI	ACCTGC	1 cut(s)	290
BspPI	GGATC	1 cut(s)	239
BsrDI	GCAATG	1 cut(s)	168
BsrI	ACTGG	1 cut(s)	230
BssECI	CCNNGG	2 cut(s)	208, 209
BssMI	GATC	3 cut(s)	231, 255, 305
Bst2UI	CCWGG	1 cut(s)	53
Bst4CI	ACNGT	2 cut(s)	36, 543
BstAPI	GCANNNNNTGC	1 cut(s)	433
BstF5I	GGATG	1 cut(s)	385
BstFNI	CGCG	1 cut(s)	287
BstHHI	GCGC	1 cut(s)	559
BstKTI	GATC	3 cut(s)	234, 258, 308
BstMAI	GTCTC	1 cut(s)	532
BstMBI	GATC	3 cut(s)	231, 255, 305
BstMWI	GCNNNNNNNGC	2 cut(s)	349, 433
BstNI	CCWGG	1 cut(s)	53
BstSCI	CCNGG	6 cut(s)	23, 51, 207, 208, 333, 398
BstUI	CGCG	1 cut(s)	287
BtsCI	GGATG	1 cut(s)	385
BtsIMutI	CAGTG	1 cut(s)	223
BveI	ACCTGC	1 cut(s)	290
CciI	TCATGA	1 cut(s)	378
CfoI	GCGC	1 cut(s)	559
Cfr9I	CCCGGG	1 cut(s)	208
Csp6I	GTAC	2 cut(s)	82, 184
CspCI	CAANNNNNGTGG	2 cut(s)	209, 244
CviAII	CATG	1 cut(s)	379
CviJI	RGCY	5 cut(s)	98, 129, 191, 214, 352
CviKI_1	RGCY	5 cut(s)	98, 129, 191, 214, 352
CviQI	GTAC	2 cut(s)	82, 184
DpnI	GATC	3 cut(s)	233, 257, 307
DpnII	GATC	3 cut(s)	231, 255, 305
Eco88I	CYCGRG	2 cut(s)	179, 208
EcoRII	CCWGG	1 cut(s)	51
FaeI	CATG	1 cut(s)	382
FatI	CATG	1 cut(s)	378
FbaI	TGATCA	1 cut(s)	255
FokI	GGATG	1 cut(s)	372
FspI	TGCGCA	1 cut(s)	558
GlaI	GCGC	1 cut(s)	558
HapII	CCGG	4 cut(s)	24, 209, 334, 399
HhaI	GCGC	1 cut(s)	559
Hin1II	CATG	1 cut(s)	382
Hin6I	GCGC	1 cut(s)	557
HinP1I	GCGC	1 cut(s)	557
HincII	GTYRAC	1 cut(s)	39
HindII	GTYRAC	1 cut(s)	39
HindIII	AAGCTT	1 cut(s)	350
HpaI	GTTAAC	1 cut(s)	39
HpaII	CCGG	4 cut(s)	24, 209, 334, 399
Hpy166II	GTNNAC	3 cut(s)	39, 312, 589
Hpy188I	TCNGA	3 cut(s)	32, 79, 390
Hpy188III	TCNNGA	1 cut(s)	379
Hpy8I	GTNNAC	3 cut(s)	39, 312, 589
HpyAV	CCTTC	3 cut(s)	284, 356, 579
HpyCH4III	ACNGT	2 cut(s)	36, 543
HpyCH4V	TGCA	1 cut(s)	491
HpyF10VI	GCNNNNNNNGC	2 cut(s)	349, 433
Hsp92II	CATG	1 cut(s)	382
HspAI	GCGC	1 cut(s)	557
Ksp22I	TGATCA	1 cut(s)	255
KspAI	GTTAAC	1 cut(s)	39
Kzo9I	GATC	3 cut(s)	231, 255, 305
LmnI	GCTCC	3 cut(s)	107, 340, 511
LpnPI	CCDG	9 cut(s)	37, 38, 65, 211, 222, 285, 347, 412, 558
LweI	GCATC	3 cut(s)	119, 352, 394
MaeIII	GTNAC	4 cut(s)	17, 118, 355, 392
MalI	GATC	3 cut(s)	233, 257, 307
MboI	GATC	3 cut(s)	231, 255, 305
MboII	GAAGA	3 cut(s)	55, 58, 196
MluCI	AATT	4 cut(s)	238, 327, 447, 527
MnlI	CCTC	4 cut(s)	188, 331, 375, 502
MroXI	GAANNNNTTC	1 cut(s)	273
MseI	TTAA	3 cut(s)	38, 125, 137
MspI	CCGG	4 cut(s)	24, 209, 334, 399
MspR9I	CCNGG	6 cut(s)	25, 53, 209, 210, 335, 400
MvaI	CCWGG	1 cut(s)	53
MvnI	CGCG	1 cut(s)	287
MwoI	GCNNNNNNNGC	2 cut(s)	349, 433
NciI	CCSGG	5 cut(s)	25, 209, 210, 335, 400
NdeII	GATC	3 cut(s)	231, 255, 305
NlaIII	CATG	1 cut(s)	382
NmeAIII	GCCGAG	1 cut(s)	217
NmuCI	GTSAC	2 cut(s)	17, 355
NsbI	TGCGCA	1 cut(s)	558
PaeR7I	CTCGAG	1 cut(s)	179
PagI	TCATGA	1 cut(s)	378
PdmI	GAANNNNTTC	1 cut(s)	273
PsiI	TTATAA	1 cut(s)	323
Psp6I	CCWGG	1 cut(s)	51
PspGI	CCWGG	1 cut(s)	51
PspXI	VCTCGAGB	1 cut(s)	179
RsaI	GTAC	2 cut(s)	83, 185
RsaNI	GTAC	2 cut(s)	82, 184
SaqAI	TTAA	3 cut(s)	38, 125, 137
Sau3AI	GATC	3 cut(s)	231, 255, 305
ScrFI	CCNGG	6 cut(s)	25, 53, 209, 210, 335, 400
SetI	ASST	5 cut(s)	131, 304, 321, 354, 505
SfaNI	GCATC	3 cut(s)	119, 352, 394
Sfr274I	CTCGAG	1 cut(s)	179
SlaI	CTCGAG	1 cut(s)	179
SmaI	CCCGGG	1 cut(s)	210
SmlI	CTYRAG	1 cut(s)	179
SmoI	CTYRAG	1 cut(s)	179
Sse9I	AATT	4 cut(s)	238, 327, 447, 527
SsiI	CCGC	3 cut(s)	285, 467, 481
StyD4I	CCNGG	6 cut(s)	23, 51, 207, 208, 333, 398
TaaI	ACNGT	2 cut(s)	36, 543
TaqI	TCGA	2 cut(s)	113, 180
TaqII	GACCGA	1 cut(s)	233
TasI	AATT	4 cut(s)	238, 327, 447, 527
TatI	WGTACW	2 cut(s)	81, 183
Tru1I	TTAA	3 cut(s)	38, 125, 137
Tru9I	TTAA	3 cut(s)	38, 125, 137
TscAI	CASTG	1 cut(s)	230
TseFI	GTSAC	2 cut(s)	17, 355
Tsp45I	GTSAC	2 cut(s)	17, 355
TspGWI	ACGGA	1 cut(s)	120
TspMI	CCCGGG	1 cut(s)	208
TspRI	CASTG	1 cut(s)	230
XapI	RAATTY	1 cut(s)	327
XhoI	CTCGAG	1 cut(s)	179
XmaI	CCCGGG	1 cut(s)	208
XmnI	GAANNNNTTC	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.