Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0004933

Physical Location & Seq

Genomic Coordinates Forward (+)

64505431 .. 64506066

Gene Structure 636 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG444900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGCAGCAGAGCCAAAACTTGATTCACCCTATTGTAACAAAGATGGAGCAAGTCTTCACTTACACAGCTTGCCGACAGTTGTCTCAGATGTTTGCGGCGATGATCTTTTTTCATGTTTCAGAATACATTTTAGCAGCCAGCATTCATGGGAAAACTAATGTTACTCTAAAATCTCTTCTGATCAGCAAAAACTACCTTGTTGCGATGATCTTTTCCTTGCTGGAGTACTTTATTGAAATCATTTTGTTCCCTGGTCTGAAGGAGCACTGGTGGGTCAGCAACTCAGGCCTTGCAATGGTTATAATAGGGGAAATCATTCGGAAGATGGCAATAATCACAGCTGGTCGCTCATTCACACATCTCATAAGGACTCGTCCCTCTGAGCATCACCAGTTGGTTACGAATGGAATTTATAGAGTTGTTCGTCATCCAGGTTACTGTGGTTTCTTCATCTGGTCAGTGGGCACTCAGATAATGCTTTGTAATCCCATATCAACAATTGCATTTGCACTCGTAGTTTGGCGCTTCTTTCAACAAAGAATTCCTTATGAAGAGTTCTACTTGAGGCAGTTTTTTGGGTCACAGTATGAGGAATATGTGAGGCGGGTTCCTTCTGGGGTGCCTTTTGTGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003880 GO:0004671 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006479 GO:0006481 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008213 GO:0008276 GO:0008757 GO:0009787 GO:0009788 GO:0009791 GO:0009908 GO:0009966 GO:0009968 GO:0009987 GO:0010340 GO:0010646 GO:0010648 GO:0012505 GO:0016740 GO:0016741 GO:0018410 GO:0019538 GO:0022414 GO:0023051 GO:0023057 GO:0032259 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048367 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051998 GO:0061458 GO:0065007 GO:0071704 GO:0090567 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

ICMT

Protein Analysis

211

Amino Acids

24.58

Weight (kDa)

9.48

Isoelectric Point (pI)

38.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEMT	PF04191	96 - 194	7.3e-11	Phospholipid methyltransferase
ICMT	PF04140	97 - 189	5.2e-30	Isoprenylcysteine carboxyl methyltransferase (ICMT) family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004933)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08335 AT5G08335 AT5G23320 AT5G23320
malus_domestica	MD11G1238800.v1.1 MD13G1003500.v1.1 MD16G1003900.v1.1
prunus_persica	Prupe.1G348900_v2.0.a1 Prupe.1G348900_v2.0.a1
pyrus_communis	pycom13g00300 pycom16g00210
rosa_chinensis	RchiOBHm_Chr1g0318061 RchiOBHm_Chr1g0318091 RchiOBHm_Chr1g0318101 RchiOBHm_Chr4g0446911
rosa_laevigata	RLG00000005622 RLG00000030561 RLG00000030567
rosa_multiflora	Rmu_sc0001753.1_g000011 Rmu_sc0011424.1_g000010 Rmu_sc0011539.1_g000006
rosa_roxburghii	Rroxscaffold_4G00329550 Rroxscaffold_4G00329600
rosa_rugosa	Rorug04G0375900
rosa_samantha	Rh4AG437100 Rh4BG446300 Rh4CG463600 Rh4DG444900
rosa_wichuraiana	Rw1G002410 Rw4G037400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	302
AccB1I	GGYRCC	1 cut(s)	619
AciI	CCGC	2 cut(s)	95, 604
AcsI	RAATTY	2 cut(s)	408, 540
AcuI	CTGAAG	1 cut(s)	278
AfaI	GTAC	1 cut(s)	227
AfiI	CCNNNNNNNGG	1 cut(s)	295
AgsI	TTSAA	2 cut(s)	236, 533
AjnI	CCWGG	2 cut(s)	250, 430
AjuI	GAANNNNNNNTTGG	1 cut(s)	38
AluBI	AGCT	2 cut(s)	68, 341
AluI	AGCT	2 cut(s)	68, 341
Alw21I	GWGCWC	1 cut(s)	267
Alw26I	GTCTC	1 cut(s)	87
AoxI	GGCC	1 cut(s)	286
ApeKI	GCWGC	2 cut(s)	4, 134
ApoI	RAATTY	2 cut(s)	408, 540
Asp700I	GAANNNNTTC	1 cut(s)	315
AspLEI	GCGC	1 cut(s)	525
AsuHPI	GGTGA	2 cut(s)	17, 380
BaeGI	GKGCMC	1 cut(s)	467
BanI	GGYRCC	1 cut(s)	619
BbsI	GAAGAC	1 cut(s)	46
Bbv12I	GWGCWC	1 cut(s)	267
BbvI	GCAGC	2 cut(s)	16, 146
BccI	CCATC	2 cut(s)	37, 319
BciT130I	CCWGG	2 cut(s)	252, 432
BclI	TGATCA	1 cut(s)	180
BcoDI	GTCTC	1 cut(s)	87
BfoI	RGCGCY	1 cut(s)	526
BisI	GCNGC	3 cut(s)	5, 96, 135
BlsI	GCNGC	3 cut(s)	6, 97, 136
BmcAI	AGTACT	1 cut(s)	227
Bme1390I	CCNGG	2 cut(s)	252, 432
BmiI	GGNNCC	2 cut(s)	609, 621
BmrFI	CCNGG	2 cut(s)	252, 432
BmsI	GCATC	1 cut(s)	394
BoxI	GACNNNNGTC	1 cut(s)	79
BpiI	GAAGAC	1 cut(s)	46
BpmI	CTGGAG	1 cut(s)	242
BpuEI	CTTGAG	1 cut(s)	583
BsaJI	CCNNGG	1 cut(s)	250
BsaXI	ACNNNNNCTCC	2 cut(s)	254, 284
Bsc4I	CCNNNNNNNGG	1 cut(s)	295
Bse1I	ACTGG	2 cut(s)	272, 391
Bse3DI	GCAATG	1 cut(s)	300
BseBI	CCWGG	2 cut(s)	252, 432
BseDI	CCNNGG	1 cut(s)	250
BseGI	GGATG	1 cut(s)	427
BseLI	CCNNNNNNNGG	1 cut(s)	295
BseMI	GCAATG	1 cut(s)	300
BseMII	CTCAG	4 cut(s)	98, 297, 372, 482
BseNI	ACTGG	2 cut(s)	272, 391
BseSI	GKGCMC	1 cut(s)	467
BseXI	GCAGC	2 cut(s)	16, 146
BshFI	GGCC	1 cut(s)	288
BshNI	GGYRCC	1 cut(s)	619
BsiHKAI	GWGCWC	1 cut(s)	267
BslFI	GGGAC	1 cut(s)	360
BslI	CCNNNNNNNGG	1 cut(s)	295
BsmAI	GTCTC	1 cut(s)	87
BsmFI	GGGAC	1 cut(s)	360
BsmI	GAATGC	1 cut(s)	141
BsnI	GGCC	1 cut(s)	288
Bsp1286I	GDGCHC	2 cut(s)	267, 467
Bsp143I	GATC	3 cut(s)	102, 180, 207
BspACI	CCGC	2 cut(s)	95, 604
BspANI	GGCC	1 cut(s)	288
BspCNI	CTCAG	4 cut(s)	97, 296, 373, 481
BspLI	GGNNCC	2 cut(s)	609, 621
BspT107I	GGYRCC	1 cut(s)	619
BsrDI	GCAATG	1 cut(s)	300
BsrI	ACTGG	2 cut(s)	272, 391
BssECI	CCNNGG	1 cut(s)	250
BssMI	GATC	3 cut(s)	102, 180, 207
Bst2UI	CCWGG	2 cut(s)	252, 432
Bst4CI	ACNGT	3 cut(s)	78, 440, 585
Bst6I	CTCTTC	2 cut(s)	180, 546
BstC8I	GCNNGC	2 cut(s)	70, 139
BstDEI	CTNAG	4 cut(s)	84, 283, 381, 468
BstF5I	GGATG	1 cut(s)	427
BstH2I	RGCGCY	1 cut(s)	526
BstHHI	GCGC	1 cut(s)	525
BstKTI	GATC	3 cut(s)	105, 183, 210
BstMAI	GTCTC	1 cut(s)	87
BstMBI	GATC	3 cut(s)	102, 180, 207
BstMWI	GCNNNNNNNGC	2 cut(s)	285, 628
BstNI	CCWGG	2 cut(s)	252, 432
BstPAI	GACNNNNGTC	1 cut(s)	79
BstSCI	CCNGG	2 cut(s)	250, 430
BstSLI	GKGCMC	1 cut(s)	467
BstV1I	GCAGC	2 cut(s)	16, 146
BstV2I	GAAGAC	1 cut(s)	46
BsuRI	GGCC	1 cut(s)	288
BtgZI	GCGATG	2 cut(s)	113, 218
BtsCI	GGATG	1 cut(s)	427
BtsIMutI	CAGTG	2 cut(s)	265, 465
Cac8I	GCNNGC	2 cut(s)	70, 139
CfoI	GCGC	1 cut(s)	525
Csp6I	GTAC	1 cut(s)	226
CviAII	CATG	2 cut(s)	113, 146
CviJI	RGCY	5 cut(s)	12, 68, 137, 288, 341
CviKI_1	RGCY	5 cut(s)	12, 68, 137, 288, 341
CviQI	GTAC	1 cut(s)	226
DdeI	CTNAG	4 cut(s)	84, 283, 381, 468
DpnI	GATC	3 cut(s)	104, 182, 209
DpnII	GATC	3 cut(s)	102, 180, 207
Eam1104I	CTCTTC	2 cut(s)	180, 546
EarI	CTCTTC	2 cut(s)	180, 546
Eco147I	AGGCCT	1 cut(s)	288
Eco57I	CTGAAG	1 cut(s)	278
EcoRI	GAATTC	1 cut(s)	540
EcoRII	CCWGG	2 cut(s)	250, 430
FaeI	CATG	2 cut(s)	116, 149
FaiI	YATR	9 cut(s)	114, 147, 302, 365, 414, 491, 549, 588, 597
FalI	AAGNNNNNCTT	2 cut(s)	529, 561
FaqI	GGGAC	1 cut(s)	360
FatI	CATG	2 cut(s)	112, 145
FauI	CCCGC	1 cut(s)	597
FbaI	TGATCA	1 cut(s)	180
Fnu4HI	GCNGC	3 cut(s)	5, 96, 135
FokI	GGATG	1 cut(s)	414
Fsp4HI	GCNGC	3 cut(s)	5, 96, 135
GlaI	GCGC	1 cut(s)	524
GluI	GCNGC	3 cut(s)	5, 96, 135
GsuI	CTGGAG	1 cut(s)	242
HaeII	RGCGCY	1 cut(s)	526
HaeIII	GGCC	1 cut(s)	288
HhaI	GCGC	1 cut(s)	525
Hin1II	CATG	2 cut(s)	116, 149
Hin6I	GCGC	1 cut(s)	523
HinP1I	GCGC	1 cut(s)	523
HinfI	GANTC	2 cut(s)	22, 370
HphI	GGTGA	2 cut(s)	17, 380
Hpy188I	TCNGA	7 cut(s)	87, 121, 180, 258, 321, 382, 471
HpyAV	CCTTC	2 cut(s)	253, 621
HpyCH4III	ACNGT	3 cut(s)	78, 440, 585
HpyCH4V	TGCA	5 cut(s)	4, 293, 503, 509, 631
HpyF10VI	GCNNNNNNNGC	2 cut(s)	285, 628
HpyF3I	CTNAG	4 cut(s)	84, 283, 381, 468
Hsp92II	CATG	2 cut(s)	116, 149
HspAI	GCGC	1 cut(s)	523
Ksp22I	TGATCA	1 cut(s)	180
Kzo9I	GATC	3 cut(s)	102, 180, 207
LmnI	GCTCC	2 cut(s)	46, 262
Lsp1109I	GCAGC	2 cut(s)	16, 146
LweI	GCATC	1 cut(s)	394
MaeIII	GTNAC	5 cut(s)	34, 160, 397, 434, 579
MalI	GATC	3 cut(s)	104, 182, 209
MboI	GATC	3 cut(s)	102, 180, 207
MboII	GAAGA	5 cut(s)	46, 167, 334, 439, 563
MfeI	CAATTG	1 cut(s)	498
MhlI	GDGCHC	2 cut(s)	267, 467
MluCI	AATT	3 cut(s)	408, 498, 540
MlyI	GAGTC	1 cut(s)	364
MnlI	CCTC	4 cut(s)	388, 558, 583, 594
MroXI	GAANNNNTTC	1 cut(s)	315
MspA1I	CMGCKG	1 cut(s)	341
MspR9I	CCNGG	2 cut(s)	252, 432
MunI	CAATTG	1 cut(s)	498
Mva1269I	GAATGC	1 cut(s)	141
MvaI	CCWGG	2 cut(s)	252, 432
MwoI	GCNNNNNNNGC	2 cut(s)	285, 628
NdeII	GATC	3 cut(s)	102, 180, 207
NlaIII	CATG	2 cut(s)	116, 149
NlaIV	GGNNCC	2 cut(s)	609, 621
NmuCI	GTSAC	1 cut(s)	579
PceI	AGGCCT	1 cut(s)	288
PctI	GAATGC	1 cut(s)	141
PdmI	GAANNNNTTC	1 cut(s)	315
PfeI	GAWTC	1 cut(s)	22
PkrI	GCNGC	3 cut(s)	6, 97, 136
PleI	GAGTC	1 cut(s)	364
PpsI	GAGTC	1 cut(s)	364
PshAI	GACNNNNGTC	1 cut(s)	79
PsiI	TTATAA	1 cut(s)	302
Psp6I	CCWGG	2 cut(s)	250, 430
PspGI	CCWGG	2 cut(s)	250, 430
PspN4I	GGNNCC	2 cut(s)	609, 621
PvuII	CAGCTG	1 cut(s)	341
RsaI	GTAC	1 cut(s)	227
RsaNI	GTAC	1 cut(s)	226
SatI	GCNGC	3 cut(s)	5, 96, 135
Sau3AI	GATC	3 cut(s)	102, 180, 207
ScaI	AGTACT	1 cut(s)	227
SchI	GAGTC	1 cut(s)	364
ScrFI	CCNGG	2 cut(s)	252, 432
SduI	GDGCHC	2 cut(s)	267, 467
SetI	ASST	4 cut(s)	70, 198, 343, 436
SfaNI	GCATC	1 cut(s)	394
SmlI	CTYRAG	1 cut(s)	562
SmoI	CTYRAG	1 cut(s)	562
Sse9I	AATT	3 cut(s)	408, 498, 540
SseBI	AGGCCT	1 cut(s)	288
SsiI	CCGC	2 cut(s)	95, 604
StuI	AGGCCT	1 cut(s)	288
StyD4I	CCNGG	2 cut(s)	250, 430
TaaI	ACNGT	3 cut(s)	78, 440, 585
TasI	AATT	3 cut(s)	408, 498, 540
TatI	WGTACW	1 cut(s)	225
TauI	GCSGC	1 cut(s)	98
TfiI	GAWTC	1 cut(s)	22
TscAI	CASTG	2 cut(s)	272, 465
TseFI	GTSAC	1 cut(s)	579
TseI	GCWGC	2 cut(s)	4, 134
Tsp45I	GTSAC	1 cut(s)	579
TspDTI	ATGAA	4 cut(s)	101, 134, 439, 564
TspRI	CASTG	2 cut(s)	272, 465
XapI	RAATTY	2 cut(s)	408, 540
XmnI	GAANNNNTTC	1 cut(s)	315
ZrmI	AGTACT	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.