Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0004933

Physical Location & Seq

Genomic Coordinates Reverse (-)

63502970 .. 63504544

Gene Structure 1575 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030561

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGTGTCTGTTGATTCCATTTATTCATCAGTGTAAGCAGCAAAAAAGATGGGCTGATGGGTCACAGAGAGCTTCTAAAGTTGTTGCATACTATGGCTTGAAGGAACCACCTTATAAACTTGATTCTTTGGAACCCTATATGAGTCAGAGGACATTGGAGGTTCATTGGGGAGGCCATCATCGTAACTACTTGGAAGGTTTGAAAAAACAGCTAGAGAAGAGTGACATACTGTATGGCTACACTTTTGATGAACTTGTCAAAGCAACATATAATAATGGGAATCCCGTAACTGAATTTAACAACGCTGCTCAGGAATCCATGCAACCTGGAGGATTGGACATGCCCAAACTAGGTGTAATTGAGCAGATTGAAAAGGATTTTGGTTCCAATACAAGTTTCAGAGAGAAGTTTATAGAAGCAGCACTAAATTTGCTTGGCTGGTTTGTAAGTTATCATGTAGTCATGACTAATTATTATGCACTCGTGCTCGACATTGTTCCAGAAGATCGCGACCCACCAAGTGTCTGTACAAACCAGCTAAGGACATCATCTTGTGGCCTTGTTTTGCGAATAAACTCCAGTCATTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000303 GO:0000305 GO:0003674 GO:0003824 GO:0004784 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006801 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009636 GO:0009987 GO:0010035 GO:0016209 GO:0016491 GO:0016721 GO:0019430 GO:0033554 GO:0034599 GO:0034614 GO:0042221 GO:0042644 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071450 GO:0071451 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1901701 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04013 ko04068 ko04146 ko04211 ko04212 ko04213 ko05016 map04013 map04068 map04146 map04211 map04212 map04213 map05016

Pfam Domains

Protein Families

Sod_Fe_C Sod_Fe_N

Protein Analysis

197

Amino Acids

22.45

Weight (kDa)

6.3

Isoelectric Point (pI)

55.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sod_Fe_N	PF00081	31 - 76	7.4e-10	Iron/manganese superoxide dismutases, alpha-hairpin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004933)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08335 AT5G08335 AT5G23320 AT5G23320
malus_domestica	MD11G1238800.v1.1 MD13G1003500.v1.1 MD16G1003900.v1.1
prunus_persica	Prupe.1G348900_v2.0.a1 Prupe.1G348900_v2.0.a1
pyrus_communis	pycom13g00300 pycom16g00210
rosa_chinensis	RchiOBHm_Chr1g0318061 RchiOBHm_Chr1g0318091 RchiOBHm_Chr1g0318101 RchiOBHm_Chr4g0446911
rosa_laevigata	RLG00000005622 RLG00000030561 RLG00000030567
rosa_multiflora	Rmu_sc0001753.1_g000011 Rmu_sc0011424.1_g000010 Rmu_sc0011539.1_g000006
rosa_roxburghii	Rroxscaffold_4G00329550 Rroxscaffold_4G00329600
rosa_rugosa	Rorug04G0375900
rosa_samantha	Rh4AG437100 Rh4BG446300 Rh4CG463600 Rh4DG444900
rosa_wichuraiana	Rw1G002410 Rw4G037400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	114
AccII	CGCG	1 cut(s)	510
AcsI	RAATTY	2 cut(s)	293, 427
AdeI	CACNNNGTG	1 cut(s)	521
AfaI	GTAC	1 cut(s)	529
AfiI	CCNNNNNNNGG	1 cut(s)	350
AgsI	TTSAA	3 cut(s)	100, 202, 371
AjnI	CCWGG	1 cut(s)	325
AjuI	GAANNNNNNNTTGG	4 cut(s)	363, 380, 395, 412
AluBI	AGCT	3 cut(s)	71, 211, 538
AluI	AGCT	3 cut(s)	71, 211, 538
Alw21I	GWGCWC	1 cut(s)	489
AoxI	GGCC	2 cut(s)	172, 556
ApeKI	GCWGC	3 cut(s)	37, 305, 419
ApoI	RAATTY	2 cut(s)	293, 427
BauI	CACGAG	1 cut(s)	482
Bbv12I	GWGCWC	1 cut(s)	489
BbvI	GCAGC	3 cut(s)	49, 292, 431
BccI	CCATC	3 cut(s)	42, 50, 183
BciT130I	CCWGG	1 cut(s)	327
BfaI	CTAG	2 cut(s)	212, 350
BisI	GCNGC	3 cut(s)	38, 306, 420
BlsI	GCNGC	3 cut(s)	39, 307, 421
Bme1390I	CCNGG	1 cut(s)	327
BmiI	GGNNCC	3 cut(s)	105, 132, 385
BmrFI	CCNGG	1 cut(s)	327
BpmI	CTGGAG	2 cut(s)	348, 562
Bpu10I	CCTNAGC	2 cut(s)	309, 539
Bsc4I	CCNNNNNNNGG	1 cut(s)	350
Bse1I	ACTGG	1 cut(s)	579
BseBI	CCWGG	1 cut(s)	327
BseLI	CCNNNNNNNGG	1 cut(s)	350
BseMII	CTCAG	1 cut(s)	323
BseNI	ACTGG	1 cut(s)	579
BseXI	GCAGC	3 cut(s)	49, 292, 431
Bsh1236I	CGCG	1 cut(s)	510
BshFI	GGCC	2 cut(s)	174, 558
BsiHKAI	GWGCWC	1 cut(s)	489
BslI	CCNNNNNNNGG	1 cut(s)	350
BsnI	GGCC	2 cut(s)	174, 558
Bsp1286I	GDGCHC	1 cut(s)	489
Bsp1407I	TGTACA	1 cut(s)	527
Bsp143I	GATC	1 cut(s)	505
Bsp68I	TCGCGA	1 cut(s)	510
BspANI	GGCC	2 cut(s)	174, 558
BspCNI	CTCAG	1 cut(s)	322
BspFNI	CGCG	1 cut(s)	510
BspHI	TCATGA	1 cut(s)	462
BspLI	GGNNCC	3 cut(s)	105, 132, 385
BsrGI	TGTACA	1 cut(s)	527
BsrI	ACTGG	1 cut(s)	579
BssMI	GATC	1 cut(s)	505
BssSI	CACGAG	1 cut(s)	482
Bst2BI	CACGAG	1 cut(s)	482
Bst2UI	CCWGG	1 cut(s)	327
Bst4CI	ACNGT	1 cut(s)	231
Bst6I	CTCTTC	1 cut(s)	212
BstAUI	TGTACA	1 cut(s)	527
BstDEI	CTNAG	2 cut(s)	309, 539
BstFNI	CGCG	1 cut(s)	510
BstKTI	GATC	1 cut(s)	508
BstMBI	GATC	1 cut(s)	505
BstNI	CCWGG	1 cut(s)	327
BstNSI	RCATGY	1 cut(s)	343
BstSCI	CCNGG	1 cut(s)	325
BstUI	CGCG	1 cut(s)	510
BstV1I	GCAGC	3 cut(s)	49, 292, 431
BsuRI	GGCC	2 cut(s)	174, 558
BtsIMutI	CAGTG	1 cut(s)	35
BtuMI	TCGCGA	1 cut(s)	510
CciI	TCATGA	1 cut(s)	462
Csp6I	GTAC	1 cut(s)	528
CviAII	CATG	4 cut(s)	319, 340, 455, 463
CviJI	RGCY	9 cut(s)	53, 71, 96, 174, 211, 237, 438, 538, 558
CviKI_1	RGCY	9 cut(s)	53, 71, 96, 174, 211, 237, 438, 538, 558
CviQI	GTAC	1 cut(s)	528
DdeI	CTNAG	2 cut(s)	309, 539
DpnI	GATC	1 cut(s)	507
DpnII	GATC	1 cut(s)	505
DraIII	CACNNNGTG	1 cut(s)	521
Eam1104I	CTCTTC	1 cut(s)	212
EarI	CTCTTC	1 cut(s)	212
EcoRII	CCWGG	1 cut(s)	325
FaeI	CATG	4 cut(s)	322, 343, 458, 466
FatI	CATG	4 cut(s)	318, 339, 454, 462
Fnu4HI	GCNGC	3 cut(s)	38, 306, 420
Fsp4HI	GCNGC	3 cut(s)	38, 306, 420
FspBI	CTAG	2 cut(s)	212, 350
GluI	GCNGC	3 cut(s)	38, 306, 420
GsuI	CTGGAG	2 cut(s)	348, 562
HaeIII	GGCC	2 cut(s)	174, 558
Hin1II	CATG	4 cut(s)	322, 343, 458, 466
HinfI	GANTC	5 cut(s)	13, 122, 142, 280, 314
Hpy188I	TCNGA	2 cut(s)	147, 401
Hpy188III	TCNNGA	4 cut(s)	311, 463, 500, 509
HpyAV	CCTTC	2 cut(s)	94, 188
HpyCH4III	ACNGT	1 cut(s)	231
HpyCH4V	TGCA	3 cut(s)	86, 322, 479
HpyF3I	CTNAG	2 cut(s)	309, 539
Hsp92II	CATG	4 cut(s)	322, 343, 458, 466
Kzo9I	GATC	1 cut(s)	505
LpnPI	CCDG	6 cut(s)	296, 312, 339, 424, 513, 548
Lsp1109I	GCAGC	3 cut(s)	49, 292, 431
MaeI	CTAG	2 cut(s)	212, 350
MaeIII	GTNAC	4 cut(s)	60, 182, 221, 286
MalI	GATC	1 cut(s)	507
MboI	GATC	1 cut(s)	505
MboII	GAAGA	2 cut(s)	229, 515
MhlI	GDGCHC	1 cut(s)	489
MluCI	AATT	4 cut(s)	293, 357, 427, 469
MlyI	GAGTC	1 cut(s)	151
MnlI	CCTC	4 cut(s)	141, 151, 164, 323
MseI	TTAA	1 cut(s)	297
MspR9I	CCNGG	1 cut(s)	327
MvaI	CCWGG	1 cut(s)	327
MvnI	CGCG	1 cut(s)	510
NdeII	GATC	1 cut(s)	505
NlaIII	CATG	4 cut(s)	322, 343, 458, 466
NlaIV	GGNNCC	3 cut(s)	105, 132, 385
NmuCI	GTSAC	2 cut(s)	60, 221
NruI	TCGCGA	1 cut(s)	510
NspI	RCATGY	1 cut(s)	343
PagI	TCATGA	1 cut(s)	462
PfeI	GAWTC	4 cut(s)	13, 122, 280, 314
PkrI	GCNGC	3 cut(s)	39, 307, 421
PleI	GAGTC	1 cut(s)	150
PpsI	GAGTC	1 cut(s)	150
PsiI	TTATAA	1 cut(s)	114
Psp6I	CCWGG	1 cut(s)	325
PspGI	CCWGG	1 cut(s)	325
PspN4I	GGNNCC	3 cut(s)	105, 132, 385
RruI	TCGCGA	1 cut(s)	510
RsaI	GTAC	1 cut(s)	529
RsaNI	GTAC	1 cut(s)	528
SaqAI	TTAA	1 cut(s)	297
SatI	GCNGC	3 cut(s)	38, 306, 420
Sau3AI	GATC	1 cut(s)	505
SchI	GAGTC	1 cut(s)	151
ScrFI	CCNGG	1 cut(s)	327
SduI	GDGCHC	1 cut(s)	489
SetI	ASST	8 cut(s)	73, 112, 162, 199, 213, 328, 355, 540
Sse9I	AATT	4 cut(s)	293, 357, 427, 469
SspMI	CTAG	2 cut(s)	212, 350
StyD4I	CCNGG	1 cut(s)	325
TaaI	ACNGT	1 cut(s)	231
TaqI	TCGA	1 cut(s)	489
TasI	AATT	4 cut(s)	293, 357, 427, 469
TatI	WGTACW	1 cut(s)	527
TfiI	GAWTC	4 cut(s)	13, 122, 280, 314
Tru1I	TTAA	1 cut(s)	297
Tru9I	TTAA	1 cut(s)	297
TscAI	CASTG	1 cut(s)	35
TseFI	GTSAC	2 cut(s)	60, 221
TseI	GCWGC	3 cut(s)	37, 305, 419
Tsp45I	GTSAC	2 cut(s)	60, 221
TspDTI	ATGAA	3 cut(s)	14, 152, 264
TspRI	CASTG	1 cut(s)	35
XapI	RAATTY	2 cut(s)	293, 427
XceI	RCATGY	1 cut(s)	343
XspI	CTAG	2 cut(s)	212, 350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.