Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0004933

Physical Location & Seq

Genomic Coordinates Reverse (-)

63594493 .. 63598084

Gene Structure 3592 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030567

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGTGTGGCAGTGATGCTATTATTAGTGCTGCCCGAATGCTAGGGGAAGTGAGTAGGCTTCTTAAACCTGGAGGGGTCTATATTTTGGAGGGTAAAATTAAAAGCTTCACTGCTGCTGCATGTCCGTCTAAGGAGGGGAGGGCTTCGCCTCAACTCGAGTCACTAAACCTTACCCAAATCCTGAAGCCGCAATCCGAAAGTTCTAAACTTGACTATACCCAGTGTAAGCAGCAAAAAAGATGGGCTGATGGGTCACAGAGAGCTTCTAAAGTTGTTGCATACTATGGCTTGAAGGAACCACCTTATAAACTTGATTCTTTGGAACCCTATATGAGTCAGAGGACATTGGAGGTTCATTGGGGAGGCCATCATCGTAACTACTTGGAAGGTTTGAAAAAACAGCTAGAGAAGAGTGACATACTGTATGGCTACGCTTTTGATGAACTTGTCAAAGCAACATATAATAATGGGAATCCCTTAACTGAATTTAACAACGCTGCTCAGGAATCCATGCAACCTGGAGGATTGGACATGCCCAAACTAGGTGTAATTGAGCAGATTGAAAAGGATTTTGGTTCCAATACAAGTTTCAGAGAGAAGTTTATAGAAGCAGCACTAAATTTGCTTGGCTGGTTTGTAAGTGTTCCTTGTTGCTTGTCTGGTTTGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000303 GO:0000305 GO:0003674 GO:0003824 GO:0004784 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006801 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009636 GO:0009987 GO:0010035 GO:0016209 GO:0016491 GO:0016721 GO:0019430 GO:0033554 GO:0034599 GO:0034614 GO:0042221 GO:0042644 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071450 GO:0071451 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1901701 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04013 ko04068 ko04146 ko04211 ko04212 ko04213 ko05016 map04013 map04068 map04146 map04211 map04212 map04213 map05016

Pfam Domains

Protein Families

Sod_Fe_C Sod_Fe_N

Protein Analysis

224

Amino Acids

24.75

Weight (kDa)

7.59

Isoelectric Point (pI)

48.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sod_Fe_N	PF00081	95 - 139	1.1e-09	Iron/manganese superoxide dismutases, alpha-hairpin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004933)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08335 AT5G08335 AT5G23320 AT5G23320
malus_domestica	MD11G1238800.v1.1 MD13G1003500.v1.1 MD16G1003900.v1.1
prunus_persica	Prupe.1G348900_v2.0.a1 Prupe.1G348900_v2.0.a1
pyrus_communis	pycom13g00300 pycom16g00210
rosa_chinensis	RchiOBHm_Chr1g0318061 RchiOBHm_Chr1g0318091 RchiOBHm_Chr1g0318101 RchiOBHm_Chr4g0446911
rosa_laevigata	RLG00000005622 RLG00000030561 RLG00000030567
rosa_multiflora	Rmu_sc0001753.1_g000011 Rmu_sc0011424.1_g000010 Rmu_sc0011539.1_g000006
rosa_roxburghii	Rroxscaffold_4G00329550 Rroxscaffold_4G00329600
rosa_rugosa	Rorug04G0375900
rosa_samantha	Rh4AG437100 Rh4BG446300 Rh4CG463600 Rh4DG444900
rosa_wichuraiana	Rw1G002410 Rw4G037400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	306
AciI	CCGC	1 cut(s)	188
AcsI	RAATTY	2 cut(s)	485, 619
AcuI	CTGAAG	1 cut(s)	203
AfiI	CCNNNNNNNGG	1 cut(s)	542
AgsI	TTSAA	3 cut(s)	292, 394, 563
AjnI	CCWGG	2 cut(s)	67, 517
AjuI	GAANNNNNNNTTGG	4 cut(s)	555, 572, 587, 604
AluBI	AGCT	3 cut(s)	105, 263, 403
AluI	AGCT	3 cut(s)	105, 263, 403
Ama87I	CYCGRG	1 cut(s)	155
AoxI	GGCC	1 cut(s)	364
ApeKI	GCWGC	6 cut(s)	29, 113, 116, 229, 497, 611
ApoI	RAATTY	2 cut(s)	485, 619
AvaI	CYCGRG	1 cut(s)	155
BbvI	GCAGC	6 cut(s)	16, 100, 103, 241, 484, 623
BccI	CCATC	3 cut(s)	234, 242, 375
BciT130I	CCWGG	2 cut(s)	69, 519
BfaI	CTAG	3 cut(s)	41, 404, 542
BisI	GCNGC	7 cut(s)	30, 114, 117, 188, 230, 498, 612
BlsI	GCNGC	7 cut(s)	31, 115, 118, 189, 231, 499, 613
Bme1390I	CCNGG	2 cut(s)	69, 519
BmeT110I	CYCGRG	1 cut(s)	155
BmiI	GGNNCC	3 cut(s)	297, 324, 577
BmrFI	CCNGG	2 cut(s)	69, 519
BmrI	ACTGGG	1 cut(s)	214
BmsI	GCATC	1 cut(s)	4
BmuI	ACTGGG	1 cut(s)	214
BpmI	CTGGAG	2 cut(s)	90, 540
Bpu10I	CCTNAGC	1 cut(s)	501
Bsc4I	CCNNNNNNNGG	1 cut(s)	542
Bse1I	ACTGG	1 cut(s)	220
BseBI	CCWGG	2 cut(s)	69, 519
BseLI	CCNNNNNNNGG	1 cut(s)	542
BseMII	CTCAG	1 cut(s)	515
BseNI	ACTGG	1 cut(s)	220
BseXI	GCAGC	6 cut(s)	16, 100, 103, 241, 484, 623
BshFI	GGCC	1 cut(s)	366
BsiHKCI	CYCGRG	1 cut(s)	155
BslI	CCNNNNNNNGG	1 cut(s)	542
BsmI	GAATGC	1 cut(s)	42
BsnI	GGCC	1 cut(s)	366
BsoBI	CYCGRG	1 cut(s)	155
BspACI	CCGC	1 cut(s)	188
BspANI	GGCC	1 cut(s)	366
BspCNI	CTCAG	1 cut(s)	514
BspLI	GGNNCC	3 cut(s)	297, 324, 577
BsrI	ACTGG	1 cut(s)	220
Bst2UI	CCWGG	2 cut(s)	69, 519
Bst4CI	ACNGT	1 cut(s)	423
Bst6I	CTCTTC	1 cut(s)	404
BstDEI	CTNAG	2 cut(s)	129, 501
BstNI	CCWGG	2 cut(s)	69, 519
BstNSI	RCATGY	2 cut(s)	123, 535
BstSCI	CCNGG	2 cut(s)	67, 517
BstV1I	GCAGC	6 cut(s)	16, 100, 103, 241, 484, 623
BsuRI	GGCC	1 cut(s)	366
BtsI	GCAGTG	2 cut(s)	16, 108
BtsIMutI	CAGTG	3 cut(s)	16, 108, 227
CviAII	CATG	3 cut(s)	120, 511, 532
DdeI	CTNAG	2 cut(s)	129, 501
Eam1104I	CTCTTC	1 cut(s)	404
EarI	CTCTTC	1 cut(s)	404
Eco57I	CTGAAG	1 cut(s)	203
Eco88I	CYCGRG	1 cut(s)	155
EcoRII	CCWGG	2 cut(s)	67, 517
FaeI	CATG	3 cut(s)	123, 514, 535
FalI	AAGNNNNNCTT	2 cut(s)	631, 663
FatI	CATG	3 cut(s)	119, 510, 531
Fnu4HI	GCNGC	7 cut(s)	30, 114, 117, 188, 230, 498, 612
Fsp4HI	GCNGC	7 cut(s)	30, 114, 117, 188, 230, 498, 612
FspBI	CTAG	3 cut(s)	41, 404, 542
GluI	GCNGC	7 cut(s)	30, 114, 117, 188, 230, 498, 612
GsuI	CTGGAG	2 cut(s)	90, 540
HaeIII	GGCC	1 cut(s)	366
Hin1II	CATG	3 cut(s)	123, 514, 535
HindIII	AAGCTT	1 cut(s)	103
HinfI	GANTC	5 cut(s)	158, 314, 334, 472, 506
Hpy188I	TCNGA	3 cut(s)	196, 339, 593
Hpy188III	TCNNGA	2 cut(s)	181, 503
HpyAV	CCTTC	2 cut(s)	286, 380
HpyCH4III	ACNGT	1 cut(s)	423
HpyCH4V	TGCA	3 cut(s)	119, 278, 514
HpyF3I	CTNAG	2 cut(s)	129, 501
Hsp92II	CATG	3 cut(s)	123, 514, 535
LpnPI	CCDG	9 cut(s)	54, 81, 194, 233, 488, 504, 531, 616, 645
Lsp1109I	GCAGC	6 cut(s)	16, 100, 103, 241, 484, 623
LweI	GCATC	1 cut(s)	4
MaeI	CTAG	3 cut(s)	41, 404, 542
MaeIII	GTNAC	4 cut(s)	159, 252, 374, 413
MboII	GAAGA	1 cut(s)	421
MluCI	AATT	4 cut(s)	96, 485, 549, 619
MlyI	GAGTC	2 cut(s)	167, 343
MnlI	CCTC	9 cut(s)	65, 82, 127, 132, 159, 333, 343, 356, 515
MseI	TTAA	5 cut(s)	63, 99, 479, 489, 670
MspR9I	CCNGG	2 cut(s)	69, 519
Mva1269I	GAATGC	1 cut(s)	42
MvaI	CCWGG	2 cut(s)	69, 519
NlaIII	CATG	3 cut(s)	123, 514, 535
NlaIV	GGNNCC	3 cut(s)	297, 324, 577
NmuCI	GTSAC	3 cut(s)	159, 252, 413
NspI	RCATGY	2 cut(s)	123, 535
PaeR7I	CTCGAG	1 cut(s)	155
PctI	GAATGC	1 cut(s)	42
PfeI	GAWTC	3 cut(s)	314, 472, 506
PkrI	GCNGC	7 cut(s)	31, 115, 118, 189, 231, 499, 613
PleI	GAGTC	2 cut(s)	166, 342
PpsI	GAGTC	2 cut(s)	166, 342
PsiI	TTATAA	1 cut(s)	306
Psp6I	CCWGG	2 cut(s)	67, 517
PspGI	CCWGG	2 cut(s)	67, 517
PspN4I	GGNNCC	3 cut(s)	297, 324, 577
PspXI	VCTCGAGB	1 cut(s)	155
SaqAI	TTAA	5 cut(s)	63, 99, 479, 489, 670
SatI	GCNGC	7 cut(s)	30, 114, 117, 188, 230, 498, 612
SchI	GAGTC	2 cut(s)	167, 343
ScrFI	CCNGG	2 cut(s)	69, 519
SfaNI	GCATC	1 cut(s)	4
Sfr274I	CTCGAG	1 cut(s)	155
SlaI	CTCGAG	1 cut(s)	155
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
Sse9I	AATT	4 cut(s)	96, 485, 549, 619
SsiI	CCGC	1 cut(s)	188
SspMI	CTAG	3 cut(s)	41, 404, 542
StyD4I	CCNGG	2 cut(s)	67, 517
TaaI	ACNGT	1 cut(s)	423
TaqI	TCGA	1 cut(s)	156
TasI	AATT	4 cut(s)	96, 485, 549, 619
TauI	GCSGC	1 cut(s)	190
TfiI	GAWTC	3 cut(s)	314, 472, 506
Tru1I	TTAA	5 cut(s)	63, 99, 479, 489, 670
Tru9I	TTAA	5 cut(s)	63, 99, 479, 489, 670
TscAI	CASTG	3 cut(s)	16, 115, 227
TseFI	GTSAC	3 cut(s)	159, 252, 413
TseI	GCWGC	6 cut(s)	29, 113, 116, 229, 497, 611
Tsp45I	GTSAC	3 cut(s)	159, 252, 413
TspDTI	ATGAA	2 cut(s)	344, 456
TspGWI	ACGGA	1 cut(s)	114
TspRI	CASTG	3 cut(s)	16, 115, 227
XapI	RAATTY	2 cut(s)	485, 619
XceI	RCATGY	2 cut(s)	123, 535
XhoI	CTCGAG	1 cut(s)	155
XspI	CTAG	3 cut(s)	41, 404, 542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.