Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0004933

Physical Location & Seq

Genomic Coordinates Forward (+)

64018913 .. 64019738

Gene Structure 826 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G037400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGTCCTTCTTGAAGCATGTTTGCGTTGATATTCAGAGACAATTTTCGGTCTTCATCTCATATACCGTTTCATCCTTTGCAGCAGAGCCAAATCTTGATTCACCCTTTGTAACAAAGATGGAGCAAGTCTTCACTTACACAGCTTGCCGACAGTTGTCTCAGATGTTTGCGGCGATGATCTTTTTTCATGTTTCAGAATACATTTTAGCTGCCAGCATTCATGGGAAAACAAATGTTACTCTAAAATCTCTTCTGATCAGCAAAAACTACCTTGTTGCGATGATCTTTTCCTTGCTGGAGTACTTTATTGAAATCATTTTGTTCCCTGGTCTGAAGGAGCACTGGTGGATCAGCAACTCAGGCCTTGCAATGGTTATAATAGGGGAAATCATTCGGAAGATGGCAATAATCACAGCTGGTCGCTCATTCACACATCTCATAAGGACTCGTCCCTCTGAGCATCACCAGTTGGTTACGAATGGAATTTATAGACTTGTTCGTCATCCAGGTTACTGTGGTTTCTTCATCTGGTCAGTGGGCACTCAGATAATGCTTTGTAATCCCATGTCAACAATTGCATTTGCACTCATAGTTTGGCGCTTCTTTGAACAAAGAATTCCTTATGAAGAGTTCTACTTGAGGCAGTTTTTTGGGTCACAGTATGAGGAATATGGGAGGCGGGTTCCTTCTGGGGTGCCTTTTGTGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003880 GO:0004671 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006479 GO:0006481 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008213 GO:0008276 GO:0008757 GO:0009787 GO:0009788 GO:0009791 GO:0009908 GO:0009966 GO:0009968 GO:0009987 GO:0010340 GO:0010646 GO:0010648 GO:0012505 GO:0016740 GO:0016741 GO:0018410 GO:0019538 GO:0022414 GO:0023051 GO:0023057 GO:0032259 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048367 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051998 GO:0061458 GO:0065007 GO:0071704 GO:0090567 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

ICMT

Protein Analysis

236

Amino Acids

27.4

Weight (kDa)

9.19

Isoelectric Point (pI)

39.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEMT	PF04191	121 - 219	5.2e-10	Phospholipid methyltransferase
ICMT	PF04140	122 - 214	4.2e-29	Isoprenylcysteine carboxyl methyltransferase (ICMT) family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004933)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08335 AT5G08335 AT5G23320 AT5G23320
malus_domestica	MD11G1238800.v1.1 MD13G1003500.v1.1 MD16G1003900.v1.1
prunus_persica	Prupe.1G348900_v2.0.a1 Prupe.1G348900_v2.0.a1
pyrus_communis	pycom13g00300 pycom16g00210
rosa_chinensis	RchiOBHm_Chr1g0318061 RchiOBHm_Chr1g0318091 RchiOBHm_Chr1g0318101 RchiOBHm_Chr4g0446911
rosa_laevigata	RLG00000005622 RLG00000030561 RLG00000030567
rosa_multiflora	Rmu_sc0001753.1_g000011 Rmu_sc0011424.1_g000010 Rmu_sc0011539.1_g000006
rosa_roxburghii	Rroxscaffold_4G00329550 Rroxscaffold_4G00329600
rosa_rugosa	Rorug04G0375900
rosa_samantha	Rh4AG437100 Rh4BG446300 Rh4CG463600 Rh4DG444900
rosa_wichuraiana	Rw1G002410 Rw4G037400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	377
AasI	GACNNNNNNGTC	1 cut(s)	498
AccB1I	GGYRCC	1 cut(s)	694
AciI	CCGC	2 cut(s)	170, 679
AclWI	GGATC	1 cut(s)	356
AcsI	RAATTY	2 cut(s)	483, 615
AcuI	CTGAAG	1 cut(s)	353
AfaI	GTAC	1 cut(s)	302
AfiI	CCNNNNNNNGG	1 cut(s)	370
AgsI	TTSAA	3 cut(s)	13, 311, 608
AjnI	CCWGG	2 cut(s)	325, 505
AjuI	GAANNNNNNNTTGG	2 cut(s)	82, 114
AluBI	AGCT	3 cut(s)	143, 209, 416
AluI	AGCT	3 cut(s)	143, 209, 416
Alw21I	GWGCWC	1 cut(s)	342
Alw26I	GTCTC	2 cut(s)	31, 162
AlwI	GGATC	1 cut(s)	356
AoxI	GGCC	1 cut(s)	361
ApeKI	GCWGC	2 cut(s)	80, 209
ApoI	RAATTY	2 cut(s)	483, 615
Asp700I	GAANNNNTTC	1 cut(s)	390
AspLEI	GCGC	1 cut(s)	600
AsuHPI	GGTGA	2 cut(s)	93, 455
BaeGI	GKGCMC	1 cut(s)	542
BanI	GGYRCC	1 cut(s)	694
BbsI	GAAGAC	2 cut(s)	43, 121
Bbv12I	GWGCWC	1 cut(s)	342
BbvI	GCAGC	2 cut(s)	92, 196
BccI	CCATC	2 cut(s)	112, 394
BciT130I	CCWGG	2 cut(s)	327, 507
BclI	TGATCA	1 cut(s)	255
BcoDI	GTCTC	2 cut(s)	31, 162
BfoI	RGCGCY	1 cut(s)	601
BisI	GCNGC	3 cut(s)	81, 171, 210
BlsI	GCNGC	3 cut(s)	82, 172, 211
BmcAI	AGTACT	1 cut(s)	302
Bme1390I	CCNGG	2 cut(s)	327, 507
BmiI	GGNNCC	2 cut(s)	684, 696
BmrFI	CCNGG	2 cut(s)	327, 507
BmsI	GCATC	1 cut(s)	469
BoxI	GACNNNNGTC	1 cut(s)	154
BpiI	GAAGAC	2 cut(s)	43, 121
BpmI	CTGGAG	1 cut(s)	317
BpuEI	CTTGAG	1 cut(s)	658
BsaJI	CCNNGG	1 cut(s)	325
BsaXI	ACNNNNNCTCC	2 cut(s)	329, 359
Bsc4I	CCNNNNNNNGG	1 cut(s)	370
Bse1I	ACTGG	2 cut(s)	347, 466
Bse3DI	GCAATG	1 cut(s)	375
BseBI	CCWGG	2 cut(s)	327, 507
BseDI	CCNNGG	1 cut(s)	325
BseGI	GGATG	2 cut(s)	71, 502
BseLI	CCNNNNNNNGG	1 cut(s)	370
BseMI	GCAATG	1 cut(s)	375
BseMII	CTCAG	4 cut(s)	173, 372, 447, 557
BseNI	ACTGG	2 cut(s)	347, 466
BseSI	GKGCMC	1 cut(s)	542
BseXI	GCAGC	2 cut(s)	92, 196
BshFI	GGCC	1 cut(s)	363
BshNI	GGYRCC	1 cut(s)	694
BsiHKAI	GWGCWC	1 cut(s)	342
BslFI	GGGAC	1 cut(s)	435
BslI	CCNNNNNNNGG	1 cut(s)	370
BsmAI	GTCTC	2 cut(s)	31, 162
BsmFI	GGGAC	1 cut(s)	435
BsmI	GAATGC	1 cut(s)	216
BsnI	GGCC	1 cut(s)	363
Bsp1286I	GDGCHC	2 cut(s)	342, 542
Bsp143I	GATC	4 cut(s)	177, 255, 282, 348
BspACI	CCGC	2 cut(s)	170, 679
BspANI	GGCC	1 cut(s)	363
BspCNI	CTCAG	4 cut(s)	172, 371, 448, 556
BspLI	GGNNCC	2 cut(s)	684, 696
BspPI	GGATC	1 cut(s)	356
BspT107I	GGYRCC	1 cut(s)	694
BsrDI	GCAATG	1 cut(s)	375
BsrI	ACTGG	2 cut(s)	347, 466
BssECI	CCNNGG	1 cut(s)	325
BssMI	GATC	4 cut(s)	177, 255, 282, 348
Bst2UI	CCWGG	2 cut(s)	327, 507
Bst4CI	ACNGT	4 cut(s)	67, 153, 515, 660
Bst6I	CTCTTC	2 cut(s)	255, 621
BstC8I	GCNNGC	2 cut(s)	145, 214
BstDEI	CTNAG	4 cut(s)	159, 358, 456, 543
BstF5I	GGATG	2 cut(s)	71, 502
BstH2I	RGCGCY	1 cut(s)	601
BstHHI	GCGC	1 cut(s)	600
BstKTI	GATC	4 cut(s)	180, 258, 285, 351
BstMAI	GTCTC	2 cut(s)	31, 162
BstMBI	GATC	4 cut(s)	177, 255, 282, 348
BstMWI	GCNNNNNNNGC	1 cut(s)	360
BstNI	CCWGG	2 cut(s)	327, 507
BstNSI	RCATGY	1 cut(s)	20
BstPAI	GACNNNNGTC	1 cut(s)	154
BstSCI	CCNGG	2 cut(s)	325, 505
BstSLI	GKGCMC	1 cut(s)	542
BstV1I	GCAGC	2 cut(s)	92, 196
BstV2I	GAAGAC	2 cut(s)	43, 121
BsuRI	GGCC	1 cut(s)	363
BtgZI	GCGATG	2 cut(s)	188, 293
BtsCI	GGATG	2 cut(s)	71, 502
BtsIMutI	CAGTG	2 cut(s)	340, 540
Cac8I	GCNNGC	2 cut(s)	145, 214
CfoI	GCGC	1 cut(s)	600
Csp6I	GTAC	1 cut(s)	301
CviAII	CATG	4 cut(s)	17, 188, 221, 565
CviJI	RGCY	5 cut(s)	88, 143, 209, 363, 416
CviKI_1	RGCY	5 cut(s)	88, 143, 209, 363, 416
CviQI	GTAC	1 cut(s)	301
DdeI	CTNAG	4 cut(s)	159, 358, 456, 543
DpnI	GATC	4 cut(s)	179, 257, 284, 350
DpnII	GATC	4 cut(s)	177, 255, 282, 348
DrdI	GACNNNNNNGTC	1 cut(s)	498
DseDI	GACNNNNNNGTC	1 cut(s)	498
Eam1104I	CTCTTC	2 cut(s)	255, 621
EarI	CTCTTC	2 cut(s)	255, 621
Eco147I	AGGCCT	1 cut(s)	363
Eco57I	CTGAAG	1 cut(s)	353
EcoRI	GAATTC	1 cut(s)	615
EcoRII	CCWGG	2 cut(s)	325, 505
FaeI	CATG	4 cut(s)	20, 191, 224, 568
FalI	AAGNNNNNCTT	2 cut(s)	604, 636
FaqI	GGGAC	1 cut(s)	435
FatI	CATG	4 cut(s)	16, 187, 220, 564
FauI	CCCGC	1 cut(s)	672
FbaI	TGATCA	1 cut(s)	255
Fnu4HI	GCNGC	3 cut(s)	81, 171, 210
FokI	GGATG	2 cut(s)	58, 489
Fsp4HI	GCNGC	3 cut(s)	81, 171, 210
GlaI	GCGC	1 cut(s)	599
GluI	GCNGC	3 cut(s)	81, 171, 210
GsuI	CTGGAG	1 cut(s)	317
HaeII	RGCGCY	1 cut(s)	601
HaeIII	GGCC	1 cut(s)	363
HhaI	GCGC	1 cut(s)	600
Hin1II	CATG	4 cut(s)	20, 191, 224, 568
Hin6I	GCGC	1 cut(s)	598
HinP1I	GCGC	1 cut(s)	598
HincII	GTYRAC	1 cut(s)	570
HindII	GTYRAC	1 cut(s)	570
HinfI	GANTC	2 cut(s)	98, 445
HphI	GGTGA	2 cut(s)	93, 455
Hpy166II	GTNNAC	1 cut(s)	570
Hpy188I	TCNGA	8 cut(s)	36, 162, 196, 255, 333, 396, 457, 546
Hpy188III	TCNNGA	2 cut(s)	10, 95
Hpy8I	GTNNAC	1 cut(s)	570
HpyAV	CCTTC	3 cut(s)	16, 328, 696
HpyCH4III	ACNGT	4 cut(s)	67, 153, 515, 660
HpyCH4V	TGCA	4 cut(s)	80, 368, 578, 584
HpyF10VI	GCNNNNNNNGC	1 cut(s)	360
HpyF3I	CTNAG	4 cut(s)	159, 358, 456, 543
Hsp92II	CATG	4 cut(s)	20, 191, 224, 568
HspAI	GCGC	1 cut(s)	598
Ksp22I	TGATCA	1 cut(s)	255
Kzo9I	GATC	4 cut(s)	177, 255, 282, 348
LmnI	GCTCC	2 cut(s)	121, 337
Lsp1109I	GCAGC	2 cut(s)	92, 196
LweI	GCATC	1 cut(s)	469
MaeIII	GTNAC	5 cut(s)	109, 235, 472, 509, 654
MalI	GATC	4 cut(s)	179, 257, 284, 350
MboI	GATC	4 cut(s)	177, 255, 282, 348
MboII	GAAGA	6 cut(s)	43, 121, 242, 409, 514, 638
MfeI	CAATTG	1 cut(s)	573
MhlI	GDGCHC	2 cut(s)	342, 542
MluCI	AATT	4 cut(s)	41, 483, 573, 615
MlyI	GAGTC	1 cut(s)	439
MnlI	CCTC	4 cut(s)	463, 633, 658, 669
MroXI	GAANNNNTTC	1 cut(s)	390
MspA1I	CMGCKG	1 cut(s)	416
MspR9I	CCNGG	2 cut(s)	327, 507
MunI	CAATTG	1 cut(s)	573
Mva1269I	GAATGC	1 cut(s)	216
MvaI	CCWGG	2 cut(s)	327, 507
MwoI	GCNNNNNNNGC	1 cut(s)	360
NdeII	GATC	4 cut(s)	177, 255, 282, 348
NlaIII	CATG	4 cut(s)	20, 191, 224, 568
NlaIV	GGNNCC	2 cut(s)	684, 696
NmuCI	GTSAC	1 cut(s)	654
NspI	RCATGY	1 cut(s)	20
PceI	AGGCCT	1 cut(s)	363
PctI	GAATGC	1 cut(s)	216
PdmI	GAANNNNTTC	1 cut(s)	390
PfeI	GAWTC	1 cut(s)	98
PkrI	GCNGC	3 cut(s)	82, 172, 211
PleI	GAGTC	1 cut(s)	439
PpsI	GAGTC	1 cut(s)	439
PshAI	GACNNNNGTC	1 cut(s)	154
PsiI	TTATAA	1 cut(s)	377
Psp6I	CCWGG	2 cut(s)	325, 505
PspGI	CCWGG	2 cut(s)	325, 505
PspN4I	GGNNCC	2 cut(s)	684, 696
PvuII	CAGCTG	1 cut(s)	416
RsaI	GTAC	1 cut(s)	302
RsaNI	GTAC	1 cut(s)	301
SatI	GCNGC	3 cut(s)	81, 171, 210
Sau3AI	GATC	4 cut(s)	177, 255, 282, 348
ScaI	AGTACT	1 cut(s)	302
SchI	GAGTC	1 cut(s)	439
ScrFI	CCNGG	2 cut(s)	327, 507
SduI	GDGCHC	2 cut(s)	342, 542
SetI	ASST	5 cut(s)	145, 211, 273, 418, 511
SfaNI	GCATC	1 cut(s)	469
SmlI	CTYRAG	1 cut(s)	637
SmoI	CTYRAG	1 cut(s)	637
Sse9I	AATT	4 cut(s)	41, 483, 573, 615
SseBI	AGGCCT	1 cut(s)	363
SsiI	CCGC	2 cut(s)	170, 679
StuI	AGGCCT	1 cut(s)	363
StyD4I	CCNGG	2 cut(s)	325, 505
TaaI	ACNGT	4 cut(s)	67, 153, 515, 660
TaqII	GACCGA	1 cut(s)	37
TasI	AATT	4 cut(s)	41, 483, 573, 615
TatI	WGTACW	1 cut(s)	300
TauI	GCSGC	1 cut(s)	173
TfiI	GAWTC	1 cut(s)	98
TscAI	CASTG	2 cut(s)	347, 540
TseFI	GTSAC	1 cut(s)	654
TseI	GCWGC	2 cut(s)	80, 209
Tsp45I	GTSAC	1 cut(s)	654
TspDTI	ATGAA	6 cut(s)	43, 60, 176, 209, 514, 639
TspRI	CASTG	2 cut(s)	347, 540
XapI	RAATTY	2 cut(s)	483, 615
XceI	RCATGY	1 cut(s)	20
XmnI	GAANNNNTTC	1 cut(s)	390
ZrmI	AGTACT	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.