Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004933

Physical Location & Seq

Genomic Coordinates Forward (+)

7852585 .. 7853963

Gene Structure 1379 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G23320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGACAGAGATCTTCAGTGACACCAGCATCAGACAGTTATCTCAAATGCTACTATCACTAATCTTCTTCCACATATCCGAATACATTCTAGCCATCACCATTCACGGAGCATCAAACGTAACTCTTAGTTCGCTTTTAATCACCAAGCATTACGCTTTAGCAATGCTTCTGTCGCTTCTCGAATACCTAACGGAGATTATCCTCTTCCCGGGGCTGAAACAACACTGGTGGGTCAGCAACTTTGGACTCATAATGATCATCGTTGGGGAAATCATCAGGAAGGCAGCGATAATAACAGCGGGAAGATCGTTCACTCACCTCATAAAGATCAACTACGAAGAGCATCACGGGCTTGTGACTCATGGTGTGTATAGACTAATGAGGCATCCAAGTTACTGCGGTTTTCTCATCTGGTCGGTCGGGACACAAGTTATGCTCTGTAACCCCGTTTCAGCAGTTGCGTTCGCGGTTGTCGTGTGGCGGTTTTTTGCTCAGAGAATACCGTACGAGGAGTATTTTCTGAATCAGTTTTTTGGGGTACAGTATCTAGAGTATGCAGAGAGTGTTGCCTCTGGTGTTCCATTTGTGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003880 GO:0004671 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006479 GO:0006481 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008213 GO:0008276 GO:0008757 GO:0009787 GO:0009788 GO:0009791 GO:0009908 GO:0009966 GO:0009968 GO:0009987 GO:0010340 GO:0010646 GO:0010648 GO:0012505 GO:0016740 GO:0016741 GO:0018410 GO:0019538 GO:0022414 GO:0023051 GO:0023057 GO:0032259 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048367 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051998 GO:0061458 GO:0065007 GO:0071704 GO:0090567 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

ICMT

Protein Analysis

197

Amino Acids

22.53

Weight (kDa)

6.75

Isoelectric Point (pI)

28.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEMT	PF04191	81 - 179	2.8e-12	Phospholipid methyltransferase
ICMT	PF04140	83 - 175	5.8e-28	Isoprenylcysteine carboxyl methyltransferase (ICMT) family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004933)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08335 AT5G08335 AT5G23320 AT5G23320
malus_domestica	MD11G1238800.v1.1 MD13G1003500.v1.1 MD16G1003900.v1.1
prunus_persica	Prupe.1G348900_v2.0.a1 Prupe.1G348900_v2.0.a1
pyrus_communis	pycom13g00300 pycom16g00210
rosa_chinensis	RchiOBHm_Chr1g0318061 RchiOBHm_Chr1g0318091 RchiOBHm_Chr1g0318101 RchiOBHm_Chr4g0446911
rosa_laevigata	RLG00000005622 RLG00000030561 RLG00000030567
rosa_multiflora	Rmu_sc0001753.1_g000011 Rmu_sc0011424.1_g000010 Rmu_sc0011539.1_g000006
rosa_roxburghii	Rroxscaffold_4G00329550 Rroxscaffold_4G00329600
rosa_rugosa	Rorug04G0375900
rosa_samantha	Rh4AG437100 Rh4BG446300 Rh4CG463600 Rh4DG444900
rosa_wichuraiana	Rw1G002410 Rw4G037400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	467
AciI	CCGC	4 cut(s)	299, 399, 467, 481
AfaI	GTAC	2 cut(s)	506, 540
AfiI	CCNNNNNNNGG	1 cut(s)	208
Ama87I	CYCGRG	1 cut(s)	208
ApeKI	GCWGC	1 cut(s)	284
Asp700I	GAANNNNTTC	1 cut(s)	84
AsuC2I	CCSGG	2 cut(s)	209, 210
AsuHPI	GGTGA	3 cut(s)	88, 133, 308
AvaI	CYCGRG	1 cut(s)	208
BbvI	GCAGC	1 cut(s)	296
BccI	CCATC	1 cut(s)	101
BclI	TGATCA	1 cut(s)	255
BcnI	CCSGG	2 cut(s)	209, 210
BfaI	CTAG	2 cut(s)	89, 548
BglII	AGATCT	1 cut(s)	9
BisI	GCNGC	1 cut(s)	285
BlsI	GCNGC	1 cut(s)	286
Bme1390I	CCNGG	2 cut(s)	209, 210
BmeT110I	CYCGRG	1 cut(s)	208
BmrFI	CCNGG	2 cut(s)	209, 210
BmsI	GCATC	4 cut(s)	36, 119, 352, 394
BpuMI	CCSGG	2 cut(s)	209, 210
BsaJI	CCNNGG	2 cut(s)	208, 209
Bsc4I	CCNNNNNNNGG	1 cut(s)	208
Bse1I	ACTGG	1 cut(s)	230
Bse3DI	GCAATG	1 cut(s)	168
BseDI	CCNNGG	2 cut(s)	208, 209
BseGI	GGATG	1 cut(s)	385
BseLI	CCNNNNNNNGG	1 cut(s)	208
BseMI	GCAATG	1 cut(s)	168
BseMII	CTCAG	1 cut(s)	506
BseNI	ACTGG	1 cut(s)	230
BseRI	GAGGAG	1 cut(s)	524
BseXI	GCAGC	1 cut(s)	296
Bsh1236I	CGCG	1 cut(s)	467
Bsh1285I	CGRYCG	1 cut(s)	420
BsiEI	CGRYCG	1 cut(s)	420
BsiHKCI	CYCGRG	1 cut(s)	208
BsiSI	CCGG	1 cut(s)	209
BsiWI	CGTACG	1 cut(s)	504
BslFI	GGGAC	1 cut(s)	436
BslI	CCNNNNNNNGG	1 cut(s)	208
BsmFI	GGGAC	1 cut(s)	436
BsoBI	CYCGRG	1 cut(s)	208
Bsp143I	GATC	4 cut(s)	9, 255, 305, 327
BspACI	CCGC	4 cut(s)	299, 399, 467, 481
BspCNI	CTCAG	1 cut(s)	505
BspFNI	CGCG	1 cut(s)	467
BspQI	GCTCTTC	1 cut(s)	333
BsrDI	GCAATG	1 cut(s)	168
BsrI	ACTGG	1 cut(s)	230
BssECI	CCNNGG	2 cut(s)	208, 209
BssMI	GATC	4 cut(s)	9, 255, 305, 327
Bst4CI	ACNGT	3 cut(s)	36, 504, 543
Bst6I	CTCTTC	2 cut(s)	209, 333
BstDEI	CTNAG	2 cut(s)	125, 492
BstF5I	GGATG	1 cut(s)	385
BstFNI	CGCG	1 cut(s)	467
BstKTI	GATC	4 cut(s)	12, 258, 308, 330
BstMBI	GATC	4 cut(s)	9, 255, 305, 327
BstMCI	CGRYCG	1 cut(s)	420
BstMWI	GCNNNNNNNGC	2 cut(s)	172, 349
BstSCI	CCNGG	2 cut(s)	207, 208
BstUI	CGCG	1 cut(s)	467
BstV1I	GCAGC	1 cut(s)	296
BstX2I	RGATCY	1 cut(s)	9
BstYI	RGATCY	1 cut(s)	9
BtsCI	GGATG	1 cut(s)	385
BtsIMutI	CAGTG	2 cut(s)	22, 223
Cfr9I	CCCGGG	1 cut(s)	208
Csp6I	GTAC	2 cut(s)	505, 539
CspCI	CAANNNNNGTGG	2 cut(s)	209, 244
CviAII	CATG	1 cut(s)	362
CviJI	RGCY	3 cut(s)	92, 214, 352
CviKI_1	RGCY	3 cut(s)	92, 214, 352
CviQI	GTAC	2 cut(s)	505, 539
DdeI	CTNAG	2 cut(s)	125, 492
DpnI	GATC	4 cut(s)	11, 257, 307, 329
DpnII	GATC	4 cut(s)	9, 255, 305, 327
Eam1104I	CTCTTC	2 cut(s)	209, 333
EarI	CTCTTC	2 cut(s)	209, 333
Eco88I	CYCGRG	1 cut(s)	208
FaeI	CATG	1 cut(s)	365
FaiI	YATR	7 cut(s)	74, 251, 323, 363, 372, 434, 555
FaqI	GGGAC	1 cut(s)	436
FatI	CATG	1 cut(s)	361
FauI	CCCGC	1 cut(s)	292
FbaI	TGATCA	1 cut(s)	255
Fnu4HI	GCNGC	1 cut(s)	285
FokI	GGATG	1 cut(s)	372
Fsp4HI	GCNGC	1 cut(s)	285
FspBI	CTAG	2 cut(s)	89, 548
GluI	GCNGC	1 cut(s)	285
HapII	CCGG	1 cut(s)	209
Hin1II	CATG	1 cut(s)	365
HinfI	GANTC	3 cut(s)	246, 358, 523
HpaII	CCGG	1 cut(s)	209
HphI	GGTGA	3 cut(s)	88, 133, 308
Hpy166II	GTNNAC	2 cut(s)	312, 589
Hpy188I	TCNGA	4 cut(s)	32, 79, 495, 522
Hpy188III	TCNNGA	4 cut(s)	179, 277, 421, 548
Hpy8I	GTNNAC	2 cut(s)	312, 589
HpyAV	CCTTC	1 cut(s)	274
HpyCH4III	ACNGT	3 cut(s)	36, 504, 543
HpyCH4IV	ACGT	1 cut(s)	117
HpyCH4V	TGCA	1 cut(s)	557
HpyF10VI	GCNNNNNNNGC	2 cut(s)	172, 349
HpyF3I	CTNAG	2 cut(s)	125, 492
HpySE526I	ACGT	1 cut(s)	117
Hsp92II	CATG	1 cut(s)	365
Ksp22I	TGATCA	1 cut(s)	255
Kzo9I	GATC	4 cut(s)	9, 255, 305, 327
LguI	GCTCTTC	1 cut(s)	333
LmnI	GCTCC	1 cut(s)	107
LpnPI	CCDG	6 cut(s)	37, 211, 222, 262, 397, 558
Lsp1109I	GCAGC	1 cut(s)	296
LweI	GCATC	4 cut(s)	36, 119, 352, 394
MaeI	CTAG	2 cut(s)	89, 548
MaeII	ACGT	1 cut(s)	117
MaeIII	GTNAC	5 cut(s)	17, 118, 355, 392, 440
MalI	GATC	4 cut(s)	11, 257, 307, 329
MboI	GATC	4 cut(s)	9, 255, 305, 327
MboII	GAAGA	6 cut(s)	4, 55, 58, 196, 315, 350
MflI	RGATCY	1 cut(s)	9
MlyI	GAGTC	2 cut(s)	240, 352
MnlI	CCTC	5 cut(s)	212, 329, 375, 502, 580
MroXI	GAANNNNTTC	1 cut(s)	84
MseI	TTAA	1 cut(s)	137
MspA1I	CMGCKG	1 cut(s)	299
MspI	CCGG	1 cut(s)	209
MspR9I	CCNGG	2 cut(s)	209, 210
MvnI	CGCG	1 cut(s)	467
MwoI	GCNNNNNNNGC	2 cut(s)	172, 349
NciI	CCSGG	2 cut(s)	209, 210
NdeII	GATC	4 cut(s)	9, 255, 305, 327
NlaIII	CATG	1 cut(s)	365
NmuCI	GTSAC	2 cut(s)	17, 355
PciSI	GCTCTTC	1 cut(s)	333
PcsI	WCGNNNNNNNCGW	1 cut(s)	471
PdmI	GAANNNNTTC	1 cut(s)	84
PfeI	GAWTC	1 cut(s)	523
Pfl23II	CGTACG	1 cut(s)	504
PkrI	GCNGC	1 cut(s)	286
PleI	GAGTC	2 cut(s)	240, 352
PpsI	GAGTC	2 cut(s)	240, 352
PspLI	CGTACG	1 cut(s)	504
PsuI	RGATCY	1 cut(s)	9
RsaI	GTAC	2 cut(s)	506, 540
RsaNI	GTAC	2 cut(s)	505, 539
SapI	GCTCTTC	1 cut(s)	333
SaqAI	TTAA	1 cut(s)	137
SatI	GCNGC	1 cut(s)	285
Sau3AI	GATC	4 cut(s)	9, 255, 305, 327
SchI	GAGTC	2 cut(s)	240, 352
ScrFI	CCNGG	2 cut(s)	209, 210
SetI	ASST	3 cut(s)	120, 189, 321
SfaNI	GCATC	4 cut(s)	36, 119, 352, 394
SmaI	CCCGGG	1 cut(s)	210
SsiI	CCGC	4 cut(s)	299, 399, 467, 481
SspMI	CTAG	2 cut(s)	89, 548
StyD4I	CCNGG	2 cut(s)	207, 208
TaaI	ACNGT	3 cut(s)	36, 504, 543
TaiI	ACGT	1 cut(s)	120
TaqI	TCGA	1 cut(s)	180
TaqII	GACCGA	1 cut(s)	406
TfiI	GAWTC	1 cut(s)	523
Tru1I	TTAA	1 cut(s)	137
Tru9I	TTAA	1 cut(s)	137
TscAI	CASTG	2 cut(s)	22, 230
TseFI	GTSAC	2 cut(s)	17, 355
TseI	GCWGC	1 cut(s)	284
Tsp45I	GTSAC	2 cut(s)	17, 355
TspGWI	ACGGA	2 cut(s)	120, 206
TspMI	CCCGGG	1 cut(s)	208
TspRI	CASTG	2 cut(s)	22, 230
XbaI	TCTAGA	1 cut(s)	547
XmaI	CCCGGG	1 cut(s)	208
XmnI	GAANNNNTTC	1 cut(s)	84
XspI	CTAG	2 cut(s)	89, 548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.