Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004933

Physical Location & Seq

Genomic Coordinates Reverse (-)

62882537 .. 62884931

Gene Structure 2395 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00329600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGCGGTCTCCGGCGACCGGTGACCGGATTCCGGCGACCGATGACCTGATTCCGGGAACCGGTAACCGAAATCCGGCGACCGATGACCGGAATCCGGCTATTATTGCCCCCTATAAGCAGCAGAAAAGATGGGCTGATGGGTCACAAAGAGCTTCTAAAGTTGTTGCTTACTATGGCTTGAAGGAACCACCTTATAAACTTGATGCTTTGGAACCGTATATGAGTCAGAGGACATTGGAGGTTCATTGGGGAGGCCATCATCGTAACTTCTTGGAAGGTTTGAACAAACAGCTAGAGAAGAGTGACATACTGTATGGCTACACTTTTGATGAACTTGTCAAAGCAACATATTATAATGGGAATCCCTTAACTGAATTTAACAACACTGCCCGGGTATCAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000303 GO:0000305 GO:0003674 GO:0003824 GO:0004784 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006801 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009636 GO:0009987 GO:0010035 GO:0016209 GO:0016491 GO:0016721 GO:0019430 GO:0033554 GO:0034599 GO:0034614 GO:0042221 GO:0042644 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071450 GO:0071451 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1901701 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04013 ko04068 ko04146 ko04211 ko04212 ko04213 ko05016 map04013 map04068 map04146 map04211 map04212 map04213 map05016

Pfam Domains

Protein Families

Sod_Fe_C Sod_Fe_N

Protein Analysis

134

Amino Acids

15.18

Weight (kDa)

7.93

Isoelectric Point (pI)

44.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sod_Fe_N	PF00081	58 - 102	3.2e-11	Iron/manganese superoxide dismutases, alpha-hairpin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004933)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08335 AT5G08335 AT5G23320 AT5G23320
malus_domestica	MD11G1238800.v1.1 MD13G1003500.v1.1 MD16G1003900.v1.1
prunus_persica	Prupe.1G348900_v2.0.a1 Prupe.1G348900_v2.0.a1
pyrus_communis	pycom13g00300 pycom16g00210
rosa_chinensis	RchiOBHm_Chr1g0318061 RchiOBHm_Chr1g0318091 RchiOBHm_Chr1g0318101 RchiOBHm_Chr4g0446911
rosa_laevigata	RLG00000005622 RLG00000030561 RLG00000030567
rosa_multiflora	Rmu_sc0001753.1_g000011 Rmu_sc0011424.1_g000010 Rmu_sc0011539.1_g000006
rosa_roxburghii	Rroxscaffold_4G00329550 Rroxscaffold_4G00329600
rosa_rugosa	Rorug04G0375900
rosa_samantha	Rh4AG437100 Rh4BG446300 Rh4CG463600 Rh4DG444900
rosa_wichuraiana	Rw1G002410 Rw4G037400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	195, 354
AciI	CCGC	1 cut(s)	4
AcsI	RAATTY	1 cut(s)	374
AfiI	CCNNNNNNNGG	8 cut(s)	17, 24, 31, 52, 59, 73, 87, 94
AgeI	ACCGGT	2 cut(s)	17, 59
AgsI	TTSAA	2 cut(s)	181, 283
AluBI	AGCT	2 cut(s)	152, 292
AluI	AGCT	2 cut(s)	152, 292
Alw26I	GTCTC	1 cut(s)	12
Ama87I	CYCGRG	1 cut(s)	390
AoxI	GGCC	1 cut(s)	253
ApeKI	GCWGC	1 cut(s)	118
ApoI	RAATTY	1 cut(s)	374
AsiGI	ACCGGT	2 cut(s)	17, 59
AsuC2I	CCSGG	3 cut(s)	54, 391, 392
AsuHPI	GGTGA	1 cut(s)	32
AvaI	CYCGRG	1 cut(s)	390
BbvI	GCAGC	1 cut(s)	130
BccI	CCATC	3 cut(s)	123, 131, 264
BcnI	CCSGG	3 cut(s)	54, 391, 392
BcoDI	GTCTC	1 cut(s)	12
BfaI	CTAG	1 cut(s)	293
BisI	GCNGC	1 cut(s)	119
BlsI	GCNGC	1 cut(s)	120
Bme1390I	CCNGG	3 cut(s)	54, 391, 392
BmeT110I	CYCGRG	1 cut(s)	390
BmiI	GGNNCC	3 cut(s)	58, 186, 213
BmrFI	CCNGG	3 cut(s)	54, 391, 392
BmsI	GCATC	1 cut(s)	193
BpuMI	CCSGG	3 cut(s)	54, 391, 392
BsaI	GGTCTC	1 cut(s)	12
BsaJI	CCNNGG	1 cut(s)	390
BsaWI	WCCGGW	4 cut(s)	17, 24, 59, 87
Bsc4I	CCNNNNNNNGG	8 cut(s)	17, 24, 31, 52, 59, 73, 87, 94
Bse118I	RCCGGY	2 cut(s)	17, 59
BseDI	CCNNGG	1 cut(s)	390
BseLI	CCNNNNNNNGG	8 cut(s)	17, 24, 31, 52, 59, 73, 87, 94
BseXI	GCAGC	1 cut(s)	130
Bsh1285I	CGRYCG	3 cut(s)	18, 39, 81
BshFI	GGCC	1 cut(s)	255
BshTI	ACCGGT	2 cut(s)	17, 59
BsiEI	CGRYCG	3 cut(s)	18, 39, 81
BsiHKCI	CYCGRG	1 cut(s)	390
BslI	CCNNNNNNNGG	8 cut(s)	17, 24, 31, 52, 59, 73, 87, 94
BsmAI	GTCTC	1 cut(s)	12
BsnI	GGCC	1 cut(s)	255
Bso31I	GGTCTC	1 cut(s)	12
BsoBI	CYCGRG	1 cut(s)	390
BspACI	CCGC	1 cut(s)	4
BspANI	GGCC	1 cut(s)	255
BspLI	GGNNCC	3 cut(s)	58, 186, 213
BspTNI	GGTCTC	1 cut(s)	12
BsrFI	RCCGGY	2 cut(s)	17, 59
BssAI	RCCGGY	2 cut(s)	17, 59
BssECI	CCNNGG	1 cut(s)	390
Bst4CI	ACNGT	2 cut(s)	216, 312
Bst6I	CTCTTC	1 cut(s)	293
BstDEI	CTNAG	1 cut(s)	402
BstEII	GGTNACC	2 cut(s)	20, 62
BstMAI	GTCTC	1 cut(s)	12
BstMCI	CGRYCG	3 cut(s)	18, 39, 81
BstMWI	GCNNNNNNNGC	1 cut(s)	104
BstPI	GGTNACC	2 cut(s)	20, 62
BstSCI	CCNGG	3 cut(s)	52, 389, 390
BstV1I	GCAGC	1 cut(s)	130
BsuRI	GGCC	1 cut(s)	255
BtsI	GCAGTG	1 cut(s)	384
BtsIMutI	CAGTG	1 cut(s)	384
Cfr10I	RCCGGY	2 cut(s)	17, 59
Cfr9I	CCCGGG	1 cut(s)	390
CspAI	ACCGGT	2 cut(s)	17, 59
CviJI	RGCY	7 cut(s)	98, 134, 152, 177, 255, 292, 318
CviKI_1	RGCY	7 cut(s)	98, 134, 152, 177, 255, 292, 318
DdeI	CTNAG	1 cut(s)	402
Eam1104I	CTCTTC	1 cut(s)	293
EarI	CTCTTC	1 cut(s)	293
Eco31I	GGTCTC	1 cut(s)	12
Eco88I	CYCGRG	1 cut(s)	390
Eco91I	GGTNACC	2 cut(s)	20, 62
EcoO65I	GGTNACC	2 cut(s)	20, 62
FaiI	YATR	9 cut(s)	114, 174, 195, 219, 221, 308, 315, 349, 354
Fnu4HI	GCNGC	1 cut(s)	119
Fsp4HI	GCNGC	1 cut(s)	119
FspBI	CTAG	1 cut(s)	293
GluI	GCNGC	1 cut(s)	119
HaeIII	GGCC	1 cut(s)	255
HinfI	GANTC	5 cut(s)	28, 49, 91, 223, 361
HphI	GGTGA	1 cut(s)	32
Hpy188I	TCNGA	1 cut(s)	228
HpyAV	CCTTC	2 cut(s)	175, 269
HpyCH4III	ACNGT	2 cut(s)	216, 312
HpyF10VI	GCNNNNNNNGC	1 cut(s)	104
HpyF3I	CTNAG	1 cut(s)	402
Lsp1109I	GCAGC	1 cut(s)	130
LweI	GCATC	1 cut(s)	193
MaeI	CTAG	1 cut(s)	293
MaeIII	GTNAC	5 cut(s)	20, 62, 141, 263, 302
MboII	GAAGA	1 cut(s)	310
MluCI	AATT	1 cut(s)	374
MlyI	GAGTC	1 cut(s)	232
MnlI	CCTC	3 cut(s)	222, 232, 245
MseI	TTAA	2 cut(s)	368, 378
MspR9I	CCNGG	3 cut(s)	54, 391, 392
MwoI	GCNNNNNNNGC	1 cut(s)	104
NciI	CCSGG	3 cut(s)	54, 391, 392
NlaIV	GGNNCC	3 cut(s)	58, 186, 213
NmuCI	GTSAC	3 cut(s)	20, 141, 302
PfeI	GAWTC	4 cut(s)	28, 49, 91, 361
PfoI	TCCNGGA	1 cut(s)	52
PinAI	ACCGGT	2 cut(s)	17, 59
PkrI	GCNGC	1 cut(s)	120
PleI	GAGTC	1 cut(s)	231
PpsI	GAGTC	1 cut(s)	231
PsiI	TTATAA	2 cut(s)	195, 354
PspEI	GGTNACC	2 cut(s)	20, 62
PspN4I	GGNNCC	3 cut(s)	58, 186, 213
SaqAI	TTAA	2 cut(s)	368, 378
SatI	GCNGC	1 cut(s)	119
SchI	GAGTC	1 cut(s)	232
ScrFI	CCNGG	3 cut(s)	54, 391, 392
SetI	ASST	6 cut(s)	48, 154, 193, 243, 280, 294
SfaNI	GCATC	1 cut(s)	193
SmaI	CCCGGG	1 cut(s)	392
Sse9I	AATT	1 cut(s)	374
SsiI	CCGC	1 cut(s)	4
SspMI	CTAG	1 cut(s)	293
StyD4I	CCNGG	3 cut(s)	52, 389, 390
TaaI	ACNGT	2 cut(s)	216, 312
TaqII	GACCGA	2 cut(s)	53, 95
TasI	AATT	1 cut(s)	374
TfiI	GAWTC	4 cut(s)	28, 49, 91, 361
Tru1I	TTAA	2 cut(s)	368, 378
Tru9I	TTAA	2 cut(s)	368, 378
TscAI	CASTG	1 cut(s)	391
TseFI	GTSAC	3 cut(s)	20, 141, 302
TseI	GCWGC	1 cut(s)	118
Tsp45I	GTSAC	3 cut(s)	20, 141, 302
TspDTI	ATGAA	2 cut(s)	233, 345
TspMI	CCCGGG	1 cut(s)	390
TspRI	CASTG	1 cut(s)	391
XapI	RAATTY	1 cut(s)	374
XmaI	CCCGGG	1 cut(s)	390
XspI	CTAG	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.