Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0004933

Physical Location & Seq

Genomic Coordinates Forward (+)

58521529 .. 58522911

Gene Structure 1383 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG446300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGTCCTTCTTGAACCATATTTGCGTTGATATCGAGAGACAATTTTCGGTCTTAATCTCATTTAGCGTTTCATCCTTTGCAGGTCTCACTTCCGTGCAGCAGAGCCAAAACCCTATTGTAACAAAGATGGAGCAAGTCTTCACTTACACAGCTTGCCGACAGTTGTCTCAGATGTTTGTGGCGATGATCTTTTTTCATGTTTCCGAATACATTTTAGCAGCCAGCATTCATGGGAAAACAAATGTTACTCTAAAATCTCTTCTGATCAGCAAAAACTACCTTGTTGCGATGATCTTTTCCTTGCTGGAGTACTTTGTTGAAATCGTTTTGTTCCCTGGCCTGAAGGAACACTGGTGGGTCAGCAACTCAGGCCTTGCAATGGTTATAATAGGGGAAATCATTCGGAAGATGGCAATAATTACAGCTGGTCGTTCATTCACACATCTCATAAGGACTCGTCCCTCTGAGCATCACCAGTTGGTTACGAATGGAATTTATCGAGTTGTTCGTCATCCAGGTTACTGTGGTTTCTTCATCTGGTCAGTGGGCACTCAGATAATGCTTTGTAATCCCATATCAACAATTGCATTTGCACTCGTAGTTTGGCGCTTCTTTCAACAAAGAATTCCTTATGAAGAGTTCTACTTGAGGCAGTTTTTTGGGTCACAGTATGAGGAATATGGGAGGCGGGTTCCTTCTGGGGTGCCTTTTGTGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003880 GO:0004671 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006479 GO:0006481 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008213 GO:0008276 GO:0008757 GO:0009787 GO:0009788 GO:0009791 GO:0009908 GO:0009966 GO:0009968 GO:0009987 GO:0010340 GO:0010646 GO:0010648 GO:0012505 GO:0016740 GO:0016741 GO:0018410 GO:0019538 GO:0022414 GO:0023051 GO:0023057 GO:0032259 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048367 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051998 GO:0061458 GO:0065007 GO:0071704 GO:0090567 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

ICMT

Protein Analysis

239

Amino Acids

27.56

Weight (kDa)

9.36

Isoelectric Point (pI)

37.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEMT	PF04191	124 - 222	9.9e-11	Phospholipid methyltransferase
ICMT	PF04140	125 - 217	7e-30	Isoprenylcysteine carboxyl methyltransferase (ICMT) family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004933)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08335 AT5G08335 AT5G23320 AT5G23320
malus_domestica	MD11G1238800.v1.1 MD13G1003500.v1.1 MD16G1003900.v1.1
prunus_persica	Prupe.1G348900_v2.0.a1 Prupe.1G348900_v2.0.a1
pyrus_communis	pycom13g00300 pycom16g00210
rosa_chinensis	RchiOBHm_Chr1g0318061 RchiOBHm_Chr1g0318091 RchiOBHm_Chr1g0318101 RchiOBHm_Chr4g0446911
rosa_laevigata	RLG00000005622 RLG00000030561 RLG00000030567
rosa_multiflora	Rmu_sc0001753.1_g000011 Rmu_sc0011424.1_g000010 Rmu_sc0011539.1_g000006
rosa_roxburghii	Rroxscaffold_4G00329550 Rroxscaffold_4G00329600
rosa_rugosa	Rorug04G0375900
rosa_samantha	Rh4AG437100 Rh4BG446300 Rh4CG463600 Rh4DG444900
rosa_wichuraiana	Rw1G002410 Rw4G037400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	386
Acc36I	ACCTGC	1 cut(s)	71
AccB1I	GGYRCC	1 cut(s)	703
AciI	CCGC	1 cut(s)	688
AcsI	RAATTY	2 cut(s)	492, 624
AcuI	CTGAAG	1 cut(s)	362
AfaI	GTAC	1 cut(s)	311
AfiI	CCNNNNNNNGG	1 cut(s)	379
AgsI	TTSAA	3 cut(s)	13, 320, 617
AjnI	CCWGG	2 cut(s)	334, 514
AleI	CACNNNNGTG	1 cut(s)	92
AluBI	AGCT	2 cut(s)	152, 425
AluI	AGCT	2 cut(s)	152, 425
Alw26I	GTCTC	3 cut(s)	31, 89, 171
AoxI	GGCC	2 cut(s)	337, 370
ApeKI	GCWGC	2 cut(s)	97, 218
ApoI	RAATTY	2 cut(s)	492, 624
Asp700I	GAANNNNTTC	1 cut(s)	399
AspLEI	GCGC	1 cut(s)	609
AsuHPI	GGTGA	1 cut(s)	464
BaeGI	GKGCMC	1 cut(s)	551
BanI	GGYRCC	1 cut(s)	703
BbsI	GAAGAC	1 cut(s)	130
BbvI	GCAGC	2 cut(s)	109, 230
BccI	CCATC	2 cut(s)	121, 403
BciT130I	CCWGG	2 cut(s)	336, 516
BclI	TGATCA	1 cut(s)	264
BcoDI	GTCTC	3 cut(s)	31, 89, 171
BfoI	RGCGCY	1 cut(s)	610
BfuAI	ACCTGC	1 cut(s)	71
BisI	GCNGC	2 cut(s)	98, 219
BlsI	GCNGC	2 cut(s)	99, 220
BmcAI	AGTACT	1 cut(s)	311
Bme1390I	CCNGG	2 cut(s)	336, 516
BmiI	GGNNCC	2 cut(s)	693, 705
BmrFI	CCNGG	2 cut(s)	336, 516
BmsI	GCATC	1 cut(s)	478
BoxI	GACNNNNGTC	1 cut(s)	163
BpiI	GAAGAC	1 cut(s)	130
BpmI	CTGGAG	1 cut(s)	326
BpuEI	CTTGAG	1 cut(s)	667
BsaI	GGTCTC	1 cut(s)	89
BsaJI	CCNNGG	1 cut(s)	334
Bsc4I	CCNNNNNNNGG	1 cut(s)	379
Bse1I	ACTGG	2 cut(s)	356, 475
Bse3DI	GCAATG	1 cut(s)	384
BseBI	CCWGG	2 cut(s)	336, 516
BseDI	CCNNGG	1 cut(s)	334
BseGI	GGATG	2 cut(s)	71, 511
BseLI	CCNNNNNNNGG	1 cut(s)	379
BseMI	GCAATG	1 cut(s)	384
BseMII	CTCAG	4 cut(s)	182, 381, 456, 566
BseNI	ACTGG	2 cut(s)	356, 475
BseSI	GKGCMC	1 cut(s)	551
BseXI	GCAGC	2 cut(s)	109, 230
BsgI	GTGCAG	1 cut(s)	116
BshFI	GGCC	2 cut(s)	339, 372
BshNI	GGYRCC	1 cut(s)	703
BslFI	GGGAC	1 cut(s)	444
BslI	CCNNNNNNNGG	1 cut(s)	379
BsmAI	GTCTC	3 cut(s)	31, 89, 171
BsmFI	GGGAC	1 cut(s)	444
BsmI	GAATGC	1 cut(s)	225
BsnI	GGCC	2 cut(s)	339, 372
Bso31I	GGTCTC	1 cut(s)	89
Bsp1286I	GDGCHC	1 cut(s)	551
Bsp143I	GATC	3 cut(s)	186, 264, 291
BspACI	CCGC	1 cut(s)	688
BspANI	GGCC	2 cut(s)	339, 372
BspCNI	CTCAG	4 cut(s)	181, 380, 457, 565
BspLI	GGNNCC	2 cut(s)	693, 705
BspMI	ACCTGC	1 cut(s)	71
BspT107I	GGYRCC	1 cut(s)	703
BspTNI	GGTCTC	1 cut(s)	89
BsrDI	GCAATG	1 cut(s)	384
BsrI	ACTGG	2 cut(s)	356, 475
BssECI	CCNNGG	1 cut(s)	334
BssMI	GATC	3 cut(s)	186, 264, 291
Bst2UI	CCWGG	2 cut(s)	336, 516
Bst4CI	ACNGT	3 cut(s)	162, 524, 669
Bst6I	CTCTTC	2 cut(s)	264, 630
BstC8I	GCNNGC	2 cut(s)	154, 223
BstDEI	CTNAG	4 cut(s)	168, 367, 465, 552
BstF5I	GGATG	2 cut(s)	71, 511
BstH2I	RGCGCY	1 cut(s)	610
BstHHI	GCGC	1 cut(s)	609
BstKTI	GATC	3 cut(s)	189, 267, 294
BstMAI	GTCTC	3 cut(s)	31, 89, 171
BstMBI	GATC	3 cut(s)	186, 264, 291
BstMWI	GCNNNNNNNGC	1 cut(s)	369
BstNI	CCWGG	2 cut(s)	336, 516
BstPAI	GACNNNNGTC	1 cut(s)	163
BstSCI	CCNGG	2 cut(s)	334, 514
BstSLI	GKGCMC	1 cut(s)	551
BstV1I	GCAGC	2 cut(s)	109, 230
BstV2I	GAAGAC	1 cut(s)	130
BsuRI	GGCC	2 cut(s)	339, 372
BtgZI	GCGATG	2 cut(s)	197, 302
BtsCI	GGATG	2 cut(s)	71, 511
BtsIMutI	CAGTG	2 cut(s)	349, 549
BveI	ACCTGC	1 cut(s)	71
Cac8I	GCNNGC	2 cut(s)	154, 223
CfoI	GCGC	1 cut(s)	609
Csp6I	GTAC	1 cut(s)	310
CviAII	CATG	2 cut(s)	197, 230
CviJI	RGCY	6 cut(s)	105, 152, 221, 339, 372, 425
CviKI_1	RGCY	6 cut(s)	105, 152, 221, 339, 372, 425
CviQI	GTAC	1 cut(s)	310
DdeI	CTNAG	4 cut(s)	168, 367, 465, 552
DpnI	GATC	3 cut(s)	188, 266, 293
DpnII	GATC	3 cut(s)	186, 264, 291
Eam1104I	CTCTTC	2 cut(s)	264, 630
EarI	CTCTTC	2 cut(s)	264, 630
Eco147I	AGGCCT	1 cut(s)	372
Eco31I	GGTCTC	1 cut(s)	89
Eco32I	GATATC	1 cut(s)	31
Eco57I	CTGAAG	1 cut(s)	362
EcoRI	GAATTC	1 cut(s)	624
EcoRII	CCWGG	2 cut(s)	334, 514
EcoRV	GATATC	1 cut(s)	31
FaeI	CATG	2 cut(s)	200, 233
FaiI	YATR	9 cut(s)	18, 198, 231, 386, 449, 575, 633, 672, 681
FalI	AAGNNNNNCTT	2 cut(s)	613, 645
FaqI	GGGAC	1 cut(s)	444
FatI	CATG	2 cut(s)	196, 229
FauI	CCCGC	1 cut(s)	681
FbaI	TGATCA	1 cut(s)	264
Fnu4HI	GCNGC	2 cut(s)	98, 219
FokI	GGATG	2 cut(s)	58, 498
Fsp4HI	GCNGC	2 cut(s)	98, 219
GlaI	GCGC	1 cut(s)	608
GluI	GCNGC	2 cut(s)	98, 219
GsuI	CTGGAG	1 cut(s)	326
HaeII	RGCGCY	1 cut(s)	610
HaeIII	GGCC	2 cut(s)	339, 372
HhaI	GCGC	1 cut(s)	609
Hin1II	CATG	2 cut(s)	200, 233
Hin6I	GCGC	1 cut(s)	607
HinP1I	GCGC	1 cut(s)	607
HinfI	GANTC	1 cut(s)	454
HphI	GGTGA	1 cut(s)	464
Hpy188I	TCNGA	6 cut(s)	171, 205, 264, 405, 466, 555
Hpy188III	TCNNGA	2 cut(s)	10, 34
HpyAV	CCTTC	3 cut(s)	16, 337, 705
HpyCH4III	ACNGT	3 cut(s)	162, 524, 669
HpyCH4V	TGCA	5 cut(s)	80, 97, 377, 587, 593
HpyF10VI	GCNNNNNNNGC	1 cut(s)	369
HpyF3I	CTNAG	4 cut(s)	168, 367, 465, 552
Hsp92II	CATG	2 cut(s)	200, 233
HspAI	GCGC	1 cut(s)	607
Ksp22I	TGATCA	1 cut(s)	264
Kzo9I	GATC	3 cut(s)	186, 264, 291
LmnI	GCTCC	1 cut(s)	130
Lsp1109I	GCAGC	2 cut(s)	109, 230
LweI	GCATC	1 cut(s)	478
MaeIII	GTNAC	5 cut(s)	118, 244, 481, 518, 663
MalI	GATC	3 cut(s)	188, 266, 293
MboI	GATC	3 cut(s)	186, 264, 291
MboII	GAAGA	5 cut(s)	130, 251, 418, 523, 647
MfeI	CAATTG	1 cut(s)	582
MhlI	GDGCHC	1 cut(s)	551
MluCI	AATT	5 cut(s)	41, 417, 492, 582, 624
MlyI	GAGTC	1 cut(s)	448
MnlI	CCTC	4 cut(s)	472, 642, 667, 678
MroXI	GAANNNNTTC	1 cut(s)	399
MseI	TTAA	1 cut(s)	53
MslI	CAYNNNNRTG	1 cut(s)	92
MspA1I	CMGCKG	1 cut(s)	425
MspR9I	CCNGG	2 cut(s)	336, 516
MunI	CAATTG	1 cut(s)	582
Mva1269I	GAATGC	1 cut(s)	225
MvaI	CCWGG	2 cut(s)	336, 516
MwoI	GCNNNNNNNGC	1 cut(s)	369
NdeII	GATC	3 cut(s)	186, 264, 291
NlaIII	CATG	2 cut(s)	200, 233
NlaIV	GGNNCC	2 cut(s)	693, 705
NmuCI	GTSAC	1 cut(s)	663
OliI	CACNNNNGTG	1 cut(s)	92
PceI	AGGCCT	1 cut(s)	372
PcsI	WCGNNNNNNNCGW	1 cut(s)	505
PctI	GAATGC	1 cut(s)	225
PdmI	GAANNNNTTC	1 cut(s)	399
PkrI	GCNGC	2 cut(s)	99, 220
PleI	GAGTC	1 cut(s)	448
PpsI	GAGTC	1 cut(s)	448
PshAI	GACNNNNGTC	1 cut(s)	163
PsiI	TTATAA	1 cut(s)	386
Psp6I	CCWGG	2 cut(s)	334, 514
PspGI	CCWGG	2 cut(s)	334, 514
PspN4I	GGNNCC	2 cut(s)	693, 705
PvuII	CAGCTG	1 cut(s)	425
RsaI	GTAC	1 cut(s)	311
RsaNI	GTAC	1 cut(s)	310
RseI	CAYNNNNRTG	1 cut(s)	92
SaqAI	TTAA	1 cut(s)	53
SatI	GCNGC	2 cut(s)	98, 219
Sau3AI	GATC	3 cut(s)	186, 264, 291
ScaI	AGTACT	1 cut(s)	311
SchI	GAGTC	1 cut(s)	448
ScrFI	CCNGG	2 cut(s)	336, 516
SduI	GDGCHC	1 cut(s)	551
SetI	ASST	5 cut(s)	85, 154, 282, 427, 520
SfaNI	GCATC	1 cut(s)	478
SmiMI	CAYNNNNRTG	1 cut(s)	92
SmlI	CTYRAG	1 cut(s)	646
SmoI	CTYRAG	1 cut(s)	646
Sse9I	AATT	5 cut(s)	41, 417, 492, 582, 624
SseBI	AGGCCT	1 cut(s)	372
SsiI	CCGC	1 cut(s)	688
StuI	AGGCCT	1 cut(s)	372
StyD4I	CCNGG	2 cut(s)	334, 514
TaaI	ACNGT	3 cut(s)	162, 524, 669
TaqI	TCGA	2 cut(s)	33, 499
TaqII	GACCGA	1 cut(s)	37
TasI	AATT	5 cut(s)	41, 417, 492, 582, 624
TatI	WGTACW	1 cut(s)	309
Tru1I	TTAA	1 cut(s)	53
Tru9I	TTAA	1 cut(s)	53
TscAI	CASTG	2 cut(s)	356, 549
TseFI	GTSAC	1 cut(s)	663
TseI	GCWGC	2 cut(s)	97, 218
Tsp45I	GTSAC	1 cut(s)	663
TspDTI	ATGAA	6 cut(s)	60, 185, 218, 423, 523, 648
TspGWI	ACGGA	1 cut(s)	82
TspRI	CASTG	2 cut(s)	356, 549
XapI	RAATTY	2 cut(s)	492, 624
XmnI	GAANNNNTTC	1 cut(s)	399
ZrmI	AGTACT	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.