Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004933

Physical Location & Seq

Genomic Coordinates Reverse (-)

62850685 .. 62853480

Gene Structure 2796 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00329550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGCGAAAGATGGATATGAAGACATAATGAACATTGACATCTCATCAGTGGCTATCAACCTCATGAAGACCAGAAACAAGCACATCCCTCAGTTGAAATGTAACCAAACTCCTCATATGAGAGCCCAACGGTATCTGAAAGTGAAAGTGGCAGGAATGGCCTCAGACGATGCTTTGGAACCTTATATGAGTCAGAGGACATTGGAGGTTCATTGGGGAGGCCATCATTGTAACTACTTGGAAGGTTTGAACAAACAGCTAGAGAAGAGTGACATACTGTATGGCTACACTTTTGATGAACTTGTCAAAGCAACATATAATAATGGGAACCCCTTAACTGAATTTAACAACGCTGCCCAGGTATTAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000303 GO:0000305 GO:0003674 GO:0003824 GO:0004784 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006801 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009636 GO:0009987 GO:0010035 GO:0016209 GO:0016491 GO:0016721 GO:0019430 GO:0033554 GO:0034599 GO:0034614 GO:0042221 GO:0042644 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071450 GO:0071451 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1901701 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04013 ko04068 ko04146 ko04211 ko04212 ko04213 ko05016 map04013 map04068 map04146 map04211 map04212 map04213 map05016

Pfam Domains

Protein Families

Sod_Fe_C Sod_Fe_N

Protein Analysis

123

Amino Acids

14.03

Weight (kDa)

6.5

Isoelectric Point (pI)

34.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sod_Fe_N	PF00081	57 - 92	1.2e-08	Iron/manganese superoxide dismutases, alpha-hairpin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004933)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08335 AT5G08335 AT5G23320 AT5G23320
malus_domestica	MD11G1238800.v1.1 MD13G1003500.v1.1 MD16G1003900.v1.1
prunus_persica	Prupe.1G348900_v2.0.a1 Prupe.1G348900_v2.0.a1
pyrus_communis	pycom13g00300 pycom16g00210
rosa_chinensis	RchiOBHm_Chr1g0318061 RchiOBHm_Chr1g0318091 RchiOBHm_Chr1g0318101 RchiOBHm_Chr4g0446911
rosa_laevigata	RLG00000005622 RLG00000030561 RLG00000030567
rosa_multiflora	Rmu_sc0001753.1_g000011 Rmu_sc0011424.1_g000010 Rmu_sc0011539.1_g000006
rosa_roxburghii	Rroxscaffold_4G00329550 Rroxscaffold_4G00329600
rosa_rugosa	Rorug04G0375900
rosa_samantha	Rh4AG437100 Rh4BG446300 Rh4CG463600 Rh4DG444900
rosa_wichuraiana	Rw1G002410 Rw4G037400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	341
AgsI	TTSAA	2 cut(s)	97, 250
AjnI	CCWGG	1 cut(s)	357
AluBI	AGCT	1 cut(s)	259
AluI	AGCT	1 cut(s)	259
AoxI	GGCC	2 cut(s)	159, 220
ApeKI	GCWGC	1 cut(s)	353
ApoI	RAATTY	1 cut(s)	341
BanII	GRGCYC	1 cut(s)	127
BbsI	GAAGAC	2 cut(s)	27, 74
BbvI	GCAGC	1 cut(s)	340
BccI	CCATC	2 cut(s)	5, 231
BciT130I	CCWGG	1 cut(s)	359
BfaI	CTAG	1 cut(s)	260
BisI	GCNGC	1 cut(s)	354
BlsI	GCNGC	1 cut(s)	355
Bme1390I	CCNGG	1 cut(s)	359
BmiI	GGNNCC	2 cut(s)	180, 329
BmrFI	CCNGG	1 cut(s)	359
BmsI	GCATC	1 cut(s)	160
BpiI	GAAGAC	2 cut(s)	27, 74
BsaJI	CCNNGG	1 cut(s)	357
BseBI	CCWGG	1 cut(s)	359
BseDI	CCNNGG	1 cut(s)	357
BseGI	GGATG	1 cut(s)	84
BseMII	CTCAG	2 cut(s)	104, 177
BseRI	GAGGAG	1 cut(s)	102
BseXI	GCAGC	1 cut(s)	340
BshFI	GGCC	2 cut(s)	161, 222
BsnI	GGCC	2 cut(s)	161, 222
Bsp1286I	GDGCHC	1 cut(s)	127
BspANI	GGCC	2 cut(s)	161, 222
BspCNI	CTCAG	2 cut(s)	103, 176
BspHI	TCATGA	1 cut(s)	63
BspLI	GGNNCC	2 cut(s)	180, 329
BssECI	CCNNGG	1 cut(s)	357
Bst2UI	CCWGG	1 cut(s)	359
Bst4CI	ACNGT	2 cut(s)	132, 279
Bst6I	CTCTTC	1 cut(s)	260
BstDEI	CTNAG	3 cut(s)	90, 163, 369
BstF5I	GGATG	1 cut(s)	84
BstMWI	GCNNNNNNNGC	1 cut(s)	158
BstNI	CCWGG	1 cut(s)	359
BstSCI	CCNGG	1 cut(s)	357
BstV1I	GCAGC	1 cut(s)	340
BstV2I	GAAGAC	2 cut(s)	27, 74
BsuRI	GGCC	2 cut(s)	161, 222
BtsCI	GGATG	1 cut(s)	84
BtsIMutI	CAGTG	1 cut(s)	54
CciI	TCATGA	1 cut(s)	63
CviAII	CATG	1 cut(s)	64
CviJI	RGCY	6 cut(s)	53, 125, 161, 222, 259, 285
CviKI_1	RGCY	6 cut(s)	53, 125, 161, 222, 259, 285
DdeI	CTNAG	3 cut(s)	90, 163, 369
Eam1104I	CTCTTC	1 cut(s)	260
EarI	CTCTTC	1 cut(s)	260
Eco24I	GRGCYC	1 cut(s)	127
EcoRII	CCWGG	1 cut(s)	357
EcoT38I	GRGCYC	1 cut(s)	127
FaeI	CATG	1 cut(s)	67
FatI	CATG	1 cut(s)	63
FauNDI	CATATG	1 cut(s)	117
Fnu4HI	GCNGC	1 cut(s)	354
FokI	GGATG	1 cut(s)	71
FriOI	GRGCYC	1 cut(s)	127
Fsp4HI	GCNGC	1 cut(s)	354
FspBI	CTAG	1 cut(s)	260
GluI	GCNGC	1 cut(s)	354
HaeIII	GGCC	2 cut(s)	161, 222
Hin1II	CATG	1 cut(s)	67
HinfI	GANTC	1 cut(s)	190
Hpy188I	TCNGA	3 cut(s)	138, 166, 195
Hpy188III	TCNNGA	1 cut(s)	64
HpyAV	CCTTC	1 cut(s)	236
HpyCH4III	ACNGT	2 cut(s)	132, 279
HpyF10VI	GCNNNNNNNGC	1 cut(s)	158
HpyF3I	CTNAG	3 cut(s)	90, 163, 369
Hsp92II	CATG	1 cut(s)	67
LpnPI	CCDG	3 cut(s)	85, 138, 344
Lsp1109I	GCAGC	1 cut(s)	340
LweI	GCATC	1 cut(s)	160
MaeI	CTAG	1 cut(s)	260
MaeIII	GTNAC	3 cut(s)	101, 230, 269
MboII	GAAGA	3 cut(s)	32, 79, 277
MhlI	GDGCHC	1 cut(s)	127
MluCI	AATT	1 cut(s)	341
MlyI	GAGTC	1 cut(s)	199
MnlI	CCTC	7 cut(s)	71, 99, 123, 172, 189, 199, 212
MseI	TTAA	3 cut(s)	335, 345, 365
MspR9I	CCNGG	1 cut(s)	359
MvaI	CCWGG	1 cut(s)	359
MwoI	GCNNNNNNNGC	1 cut(s)	158
NdeI	CATATG	1 cut(s)	117
NlaIII	CATG	1 cut(s)	67
NlaIV	GGNNCC	2 cut(s)	180, 329
NmuCI	GTSAC	1 cut(s)	269
PagI	TCATGA	1 cut(s)	63
PkrI	GCNGC	1 cut(s)	355
PleI	GAGTC	1 cut(s)	198
PpsI	GAGTC	1 cut(s)	198
Psp6I	CCWGG	1 cut(s)	357
PspGI	CCWGG	1 cut(s)	357
PspN4I	GGNNCC	2 cut(s)	180, 329
SaqAI	TTAA	3 cut(s)	335, 345, 365
SatI	GCNGC	1 cut(s)	354
SchI	GAGTC	1 cut(s)	199
ScrFI	CCNGG	1 cut(s)	359
SduI	GDGCHC	1 cut(s)	127
SetI	ASST	6 cut(s)	63, 184, 210, 247, 261, 363
SfaNI	GCATC	1 cut(s)	160
SgeI	CNNG	7 cut(s)	76, 84, 91, 165, 250, 272, 314
Sse9I	AATT	1 cut(s)	341
SspMI	CTAG	1 cut(s)	260
StyD4I	CCNGG	1 cut(s)	357
TaaI	ACNGT	2 cut(s)	132, 279
TasI	AATT	1 cut(s)	341
Tru1I	TTAA	3 cut(s)	335, 345, 365
Tru9I	TTAA	3 cut(s)	335, 345, 365
TscAI	CASTG	1 cut(s)	54
TseFI	GTSAC	1 cut(s)	269
TseI	GCWGC	1 cut(s)	353
Tsp45I	GTSAC	1 cut(s)	269
TspDTI	ATGAA	5 cut(s)	33, 44, 80, 200, 312
TspRI	CASTG	1 cut(s)	54
XapI	RAATTY	1 cut(s)	341
XspI	CTAG	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.