Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004933

Physical Location & Seq

Genomic Coordinates Forward (+)

66858396 .. 66860386

Gene Structure 1991 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ41439

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGTCCTTCTTGAAGCATGTTTGCGTTGATATTCAGAGACAATTTTCGGTCTTCATCTCATATACCGTTTCATCCTTTGCAGGTCTCACTTCCATGCAGCAGAGCCAAAACTTGATTCACCCTATTGTAACAAAGATGGAGCAAGTCTTCACTTACACAGCTTGCCGACAGTTGTCTCAGATGTTTGCGGCGATGATCTTTTTTCATGTTTCAGAATACATTTTAGCAGCCAGCATTCATGGGAAAACTAATGTTACTCTAAAATCTCTTCTGATCAGCAAAAACTACCTTGTTGCGATGATCTTTTCCTTGCTGGAGTACTTTATTGAAATCATTTTGTTCCCTGGTCTGAAGGAGCACTGGTGGGTCAGCAACTCAGGCCTTGCAATGGTTATAATAGGGGAAATCATTCGGAAGATGGCAATAATCACAGCTGGTCGCTCATTCACACATCTCATAAGGACTCGTCCCTCTGAGCATCACCAGTTGGTTACGAATGGAATTTATAGAGTTGTTCGTCATCCAGGTTACTGTGGTTTCTTCATCTGGTCAGTGGGCACTCAGATAATGCTTTGTAATCCCATATCAACAATTGCATTTGCACTCGTAGTTTGGCGCTTCTTTCAACAAAGAATTCCTTATGAAGAGTTCTACTTGAGGCAGTTTTTTGGGTCACAGTATGAGGAATATGTGAGGCGGGTTCCTTCTGGGGTGCCTTTTGTGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003880 GO:0004671 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006479 GO:0006481 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008213 GO:0008276 GO:0008757 GO:0009787 GO:0009788 GO:0009791 GO:0009908 GO:0009966 GO:0009968 GO:0009987 GO:0010340 GO:0010646 GO:0010648 GO:0012505 GO:0016740 GO:0016741 GO:0018410 GO:0019538 GO:0022414 GO:0023051 GO:0023057 GO:0032259 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048367 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051998 GO:0061458 GO:0065007 GO:0071704 GO:0090567 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

ICMT

Protein Analysis

242

Amino Acids

28.06

Weight (kDa)

9.46

Isoelectric Point (pI)

36.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEMT	PF04191	127 - 225	1e-10	Phospholipid methyltransferase
ICMT	PF04140	128 - 220	7.2e-30	Isoprenylcysteine carboxyl methyltransferase (ICMT) family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004933)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08335 AT5G08335 AT5G23320 AT5G23320
malus_domestica	MD11G1238800.v1.1 MD13G1003500.v1.1 MD16G1003900.v1.1
prunus_persica	Prupe.1G348900_v2.0.a1 Prupe.1G348900_v2.0.a1
pyrus_communis	pycom13g00300 pycom16g00210
rosa_chinensis	RchiOBHm_Chr1g0318061 RchiOBHm_Chr1g0318091 RchiOBHm_Chr1g0318101 RchiOBHm_Chr4g0446911
rosa_laevigata	RLG00000005622 RLG00000030561 RLG00000030567
rosa_multiflora	Rmu_sc0001753.1_g000011 Rmu_sc0011424.1_g000010 Rmu_sc0011539.1_g000006
rosa_roxburghii	Rroxscaffold_4G00329550 Rroxscaffold_4G00329600
rosa_rugosa	Rorug04G0375900
rosa_samantha	Rh4AG437100 Rh4BG446300 Rh4CG463600 Rh4DG444900
rosa_wichuraiana	Rw1G002410 Rw4G037400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	395
Acc36I	ACCTGC	1 cut(s)	71
AccB1I	GGYRCC	1 cut(s)	712
AciI	CCGC	2 cut(s)	188, 697
AcsI	RAATTY	2 cut(s)	501, 633
AcuI	CTGAAG	1 cut(s)	371
AfaI	GTAC	1 cut(s)	320
AfiI	CCNNNNNNNGG	1 cut(s)	388
AgsI	TTSAA	3 cut(s)	13, 329, 626
AjnI	CCWGG	2 cut(s)	343, 523
AjuI	GAANNNNNNNTTGG	2 cut(s)	99, 131
AluBI	AGCT	2 cut(s)	161, 434
AluI	AGCT	2 cut(s)	161, 434
Alw21I	GWGCWC	1 cut(s)	360
Alw26I	GTCTC	3 cut(s)	31, 89, 180
AoxI	GGCC	1 cut(s)	379
ApeKI	GCWGC	2 cut(s)	97, 227
ApoI	RAATTY	2 cut(s)	501, 633
Asp700I	GAANNNNTTC	1 cut(s)	408
AspLEI	GCGC	1 cut(s)	618
AsuHPI	GGTGA	2 cut(s)	110, 473
BaeGI	GKGCMC	1 cut(s)	560
BanI	GGYRCC	1 cut(s)	712
BbsI	GAAGAC	2 cut(s)	43, 139
Bbv12I	GWGCWC	1 cut(s)	360
BbvI	GCAGC	2 cut(s)	109, 239
BccI	CCATC	2 cut(s)	130, 412
BciT130I	CCWGG	2 cut(s)	345, 525
BclI	TGATCA	1 cut(s)	273
BcoDI	GTCTC	3 cut(s)	31, 89, 180
BfoI	RGCGCY	1 cut(s)	619
BfuAI	ACCTGC	1 cut(s)	71
BisI	GCNGC	3 cut(s)	98, 189, 228
BlsI	GCNGC	3 cut(s)	99, 190, 229
BmcAI	AGTACT	1 cut(s)	320
Bme1390I	CCNGG	2 cut(s)	345, 525
BmiI	GGNNCC	2 cut(s)	702, 714
BmrFI	CCNGG	2 cut(s)	345, 525
BmsI	GCATC	1 cut(s)	487
BoxI	GACNNNNGTC	1 cut(s)	172
BpiI	GAAGAC	2 cut(s)	43, 139
BpmI	CTGGAG	1 cut(s)	335
BpuEI	CTTGAG	1 cut(s)	676
BsaI	GGTCTC	1 cut(s)	89
BsaJI	CCNNGG	1 cut(s)	343
BsaXI	ACNNNNNCTCC	2 cut(s)	347, 377
Bsc4I	CCNNNNNNNGG	1 cut(s)	388
Bse1I	ACTGG	2 cut(s)	365, 484
Bse3DI	GCAATG	1 cut(s)	393
BseBI	CCWGG	2 cut(s)	345, 525
BseDI	CCNNGG	1 cut(s)	343
BseGI	GGATG	2 cut(s)	71, 520
BseLI	CCNNNNNNNGG	1 cut(s)	388
BseMI	GCAATG	1 cut(s)	393
BseMII	CTCAG	4 cut(s)	191, 390, 465, 575
BseNI	ACTGG	2 cut(s)	365, 484
BseSI	GKGCMC	1 cut(s)	560
BseXI	GCAGC	2 cut(s)	109, 239
BshFI	GGCC	1 cut(s)	381
BshNI	GGYRCC	1 cut(s)	712
BsiHKAI	GWGCWC	1 cut(s)	360
BslFI	GGGAC	1 cut(s)	453
BslI	CCNNNNNNNGG	1 cut(s)	388
BsmAI	GTCTC	3 cut(s)	31, 89, 180
BsmFI	GGGAC	1 cut(s)	453
BsmI	GAATGC	1 cut(s)	234
BsnI	GGCC	1 cut(s)	381
Bso31I	GGTCTC	1 cut(s)	89
Bsp1286I	GDGCHC	2 cut(s)	360, 560
Bsp143I	GATC	3 cut(s)	195, 273, 300
BspACI	CCGC	2 cut(s)	188, 697
BspANI	GGCC	1 cut(s)	381
BspCNI	CTCAG	4 cut(s)	190, 389, 466, 574
BspLI	GGNNCC	2 cut(s)	702, 714
BspMI	ACCTGC	1 cut(s)	71
BspT107I	GGYRCC	1 cut(s)	712
BspTNI	GGTCTC	1 cut(s)	89
BsrDI	GCAATG	1 cut(s)	393
BsrI	ACTGG	2 cut(s)	365, 484
BssECI	CCNNGG	1 cut(s)	343
BssMI	GATC	3 cut(s)	195, 273, 300
Bst2UI	CCWGG	2 cut(s)	345, 525
Bst4CI	ACNGT	4 cut(s)	67, 171, 533, 678
Bst6I	CTCTTC	2 cut(s)	273, 639
BstC8I	GCNNGC	2 cut(s)	163, 232
BstDEI	CTNAG	4 cut(s)	177, 376, 474, 561
BstF5I	GGATG	2 cut(s)	71, 520
BstH2I	RGCGCY	1 cut(s)	619
BstHHI	GCGC	1 cut(s)	618
BstKTI	GATC	3 cut(s)	198, 276, 303
BstMAI	GTCTC	3 cut(s)	31, 89, 180
BstMBI	GATC	3 cut(s)	195, 273, 300
BstMWI	GCNNNNNNNGC	2 cut(s)	378, 721
BstNI	CCWGG	2 cut(s)	345, 525
BstNSI	RCATGY	1 cut(s)	20
BstPAI	GACNNNNGTC	1 cut(s)	172
BstSCI	CCNGG	2 cut(s)	343, 523
BstSLI	GKGCMC	1 cut(s)	560
BstV1I	GCAGC	2 cut(s)	109, 239
BstV2I	GAAGAC	2 cut(s)	43, 139
BsuRI	GGCC	1 cut(s)	381
BtgZI	GCGATG	2 cut(s)	206, 311
BtsCI	GGATG	2 cut(s)	71, 520
BtsIMutI	CAGTG	2 cut(s)	358, 558
BveI	ACCTGC	1 cut(s)	71
Cac8I	GCNNGC	2 cut(s)	163, 232
CfoI	GCGC	1 cut(s)	618
Csp6I	GTAC	1 cut(s)	319
CviAII	CATG	4 cut(s)	17, 94, 206, 239
CviJI	RGCY	5 cut(s)	105, 161, 230, 381, 434
CviKI_1	RGCY	5 cut(s)	105, 161, 230, 381, 434
CviQI	GTAC	1 cut(s)	319
DdeI	CTNAG	4 cut(s)	177, 376, 474, 561
DpnI	GATC	3 cut(s)	197, 275, 302
DpnII	GATC	3 cut(s)	195, 273, 300
Eam1104I	CTCTTC	2 cut(s)	273, 639
EarI	CTCTTC	2 cut(s)	273, 639
Eco147I	AGGCCT	1 cut(s)	381
Eco31I	GGTCTC	1 cut(s)	89
Eco57I	CTGAAG	1 cut(s)	371
EcoRI	GAATTC	1 cut(s)	633
EcoRII	CCWGG	2 cut(s)	343, 523
FaeI	CATG	4 cut(s)	20, 97, 209, 242
FalI	AAGNNNNNCTT	2 cut(s)	622, 654
FaqI	GGGAC	1 cut(s)	453
FatI	CATG	4 cut(s)	16, 93, 205, 238
FauI	CCCGC	1 cut(s)	690
FbaI	TGATCA	1 cut(s)	273
Fnu4HI	GCNGC	3 cut(s)	98, 189, 228
FokI	GGATG	2 cut(s)	58, 507
Fsp4HI	GCNGC	3 cut(s)	98, 189, 228
GlaI	GCGC	1 cut(s)	617
GluI	GCNGC	3 cut(s)	98, 189, 228
GsuI	CTGGAG	1 cut(s)	335
HaeII	RGCGCY	1 cut(s)	619
HaeIII	GGCC	1 cut(s)	381
HhaI	GCGC	1 cut(s)	618
Hin1II	CATG	4 cut(s)	20, 97, 209, 242
Hin6I	GCGC	1 cut(s)	616
HinP1I	GCGC	1 cut(s)	616
HinfI	GANTC	2 cut(s)	115, 463
HphI	GGTGA	2 cut(s)	110, 473
Hpy188I	TCNGA	8 cut(s)	36, 180, 214, 273, 351, 414, 475, 564
Hpy188III	TCNNGA	1 cut(s)	10
HpyAV	CCTTC	3 cut(s)	16, 346, 714
HpyCH4III	ACNGT	4 cut(s)	67, 171, 533, 678
HpyCH4V	TGCA	6 cut(s)	80, 97, 386, 596, 602, 724
HpyF10VI	GCNNNNNNNGC	2 cut(s)	378, 721
HpyF3I	CTNAG	4 cut(s)	177, 376, 474, 561
Hsp92II	CATG	4 cut(s)	20, 97, 209, 242
HspAI	GCGC	1 cut(s)	616
Ksp22I	TGATCA	1 cut(s)	273
Kzo9I	GATC	3 cut(s)	195, 273, 300
LmnI	GCTCC	2 cut(s)	139, 355
Lsp1109I	GCAGC	2 cut(s)	109, 239
LweI	GCATC	1 cut(s)	487
MaeIII	GTNAC	5 cut(s)	127, 253, 490, 527, 672
MalI	GATC	3 cut(s)	197, 275, 302
MboI	GATC	3 cut(s)	195, 273, 300
MboII	GAAGA	6 cut(s)	43, 139, 260, 427, 532, 656
MfeI	CAATTG	1 cut(s)	591
MhlI	GDGCHC	2 cut(s)	360, 560
MluCI	AATT	4 cut(s)	41, 501, 591, 633
MlyI	GAGTC	1 cut(s)	457
MnlI	CCTC	4 cut(s)	481, 651, 676, 687
MroXI	GAANNNNTTC	1 cut(s)	408
MslI	CAYNNNNRTG	1 cut(s)	92
MspA1I	CMGCKG	1 cut(s)	434
MspR9I	CCNGG	2 cut(s)	345, 525
MunI	CAATTG	1 cut(s)	591
Mva1269I	GAATGC	1 cut(s)	234
MvaI	CCWGG	2 cut(s)	345, 525
MwoI	GCNNNNNNNGC	2 cut(s)	378, 721
NdeII	GATC	3 cut(s)	195, 273, 300
NlaIII	CATG	4 cut(s)	20, 97, 209, 242
NlaIV	GGNNCC	2 cut(s)	702, 714
NmuCI	GTSAC	1 cut(s)	672
NspI	RCATGY	1 cut(s)	20
PceI	AGGCCT	1 cut(s)	381
PctI	GAATGC	1 cut(s)	234
PdmI	GAANNNNTTC	1 cut(s)	408
PfeI	GAWTC	1 cut(s)	115
PkrI	GCNGC	3 cut(s)	99, 190, 229
PleI	GAGTC	1 cut(s)	457
PpsI	GAGTC	1 cut(s)	457
PshAI	GACNNNNGTC	1 cut(s)	172
PsiI	TTATAA	1 cut(s)	395
Psp6I	CCWGG	2 cut(s)	343, 523
PspGI	CCWGG	2 cut(s)	343, 523
PspN4I	GGNNCC	2 cut(s)	702, 714
PvuII	CAGCTG	1 cut(s)	434
RsaI	GTAC	1 cut(s)	320
RsaNI	GTAC	1 cut(s)	319
RseI	CAYNNNNRTG	1 cut(s)	92
SatI	GCNGC	3 cut(s)	98, 189, 228
Sau3AI	GATC	3 cut(s)	195, 273, 300
ScaI	AGTACT	1 cut(s)	320
SchI	GAGTC	1 cut(s)	457
ScrFI	CCNGG	2 cut(s)	345, 525
SduI	GDGCHC	2 cut(s)	360, 560
SetI	ASST	5 cut(s)	85, 163, 291, 436, 529
SfaNI	GCATC	1 cut(s)	487
SmiMI	CAYNNNNRTG	1 cut(s)	92
SmlI	CTYRAG	1 cut(s)	655
SmoI	CTYRAG	1 cut(s)	655
Sse9I	AATT	4 cut(s)	41, 501, 591, 633
SseBI	AGGCCT	1 cut(s)	381
SsiI	CCGC	2 cut(s)	188, 697
StuI	AGGCCT	1 cut(s)	381
StyD4I	CCNGG	2 cut(s)	343, 523
TaaI	ACNGT	4 cut(s)	67, 171, 533, 678
TaqII	GACCGA	1 cut(s)	37
TasI	AATT	4 cut(s)	41, 501, 591, 633
TatI	WGTACW	1 cut(s)	318
TauI	GCSGC	1 cut(s)	191
TfiI	GAWTC	1 cut(s)	115
TscAI	CASTG	2 cut(s)	365, 558
TseFI	GTSAC	1 cut(s)	672
TseI	GCWGC	2 cut(s)	97, 227
Tsp45I	GTSAC	1 cut(s)	672
TspDTI	ATGAA	6 cut(s)	43, 60, 194, 227, 532, 657
TspRI	CASTG	2 cut(s)	365, 558
XapI	RAATTY	2 cut(s)	501, 633
XceI	RCATGY	1 cut(s)	20
XmnI	GAANNNNTTC	1 cut(s)	408
ZrmI	AGTACT	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.