Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0004933

Physical Location & Seq

Genomic Coordinates Reverse (-)

34668264 .. 34671319

Gene Structure 3056 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1238800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGACAGGCAGCCACCACCCCCTTCGTCGTGCTCGTCTCTCTCGAAACCGTTCAAGGCCAAAAGTTGGGGATGCTTTGGAGCCGTATATGAGTCAGAGAACATTGAAAGTTCATTGGGGAGGCCATCATCGAAACTATGTGGAAGGTCTGAACAAACAACTGGAGAAGAGTGACGTACAATATGGCTACATGTTCGATGAACTTGTCAAAGCAACATATAATAATGGGAATCCTTTACCTAAATTTAACAACGCTGCACAGGCATGGAGAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000303 GO:0000305 GO:0003674 GO:0003824 GO:0004784 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006801 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009636 GO:0009987 GO:0010035 GO:0016209 GO:0016491 GO:0016721 GO:0019430 GO:0033554 GO:0034599 GO:0034614 GO:0042221 GO:0042644 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071450 GO:0071451 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1901701 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04013 ko04068 ko04146 ko04211 ko04212 ko04213 ko05016 map04013 map04068 map04146 map04211 map04212 map04213 map05016

Pfam Domains

Protein Families

Sod_Fe_C Sod_Fe_N

Protein Analysis

92

Amino Acids

10.62

Weight (kDa)

10.06

Isoelectric Point (pI)

48.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sod_Fe_N	PF00081	24 - 61	3.6e-10	Iron/manganese superoxide dismutases, alpha-hairpin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004933)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08335 AT5G08335 AT5G23320 AT5G23320
malus_domestica	MD11G1238800.v1.1 MD13G1003500.v1.1 MD16G1003900.v1.1
prunus_persica	Prupe.1G348900_v2.0.a1 Prupe.1G348900_v2.0.a1
pyrus_communis	pycom13g00300 pycom16g00210
rosa_chinensis	RchiOBHm_Chr1g0318061 RchiOBHm_Chr1g0318091 RchiOBHm_Chr1g0318101 RchiOBHm_Chr4g0446911
rosa_laevigata	RLG00000005622 RLG00000030561 RLG00000030567
rosa_multiflora	Rmu_sc0001753.1_g000011 Rmu_sc0011424.1_g000010 Rmu_sc0011539.1_g000006
rosa_roxburghii	Rroxscaffold_4G00329550 Rroxscaffold_4G00329600
rosa_rugosa	Rorug04G0375900
rosa_samantha	Rh4AG437100 Rh4BG446300 Rh4CG463600 Rh4DG444900
rosa_wichuraiana	Rw1G002410 Rw4G037400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	65
AcsI	RAATTY	1 cut(s)	242
AfaI	GTAC	1 cut(s)	177
AfiI	CCNNNNNNNGG	1 cut(s)	65
AflIII	ACRYGT	1 cut(s)	189
AgsI	TTSAA	2 cut(s)	54, 106
Alw21I	GWGCWC	1 cut(s)	34
Alw26I	GTCTC	1 cut(s)	41
AoxI	GGCC	2 cut(s)	56, 121
ApeKI	GCWGC	2 cut(s)	9, 254
ApoI	RAATTY	1 cut(s)	242
Asp700I	GAANNNNTTC	1 cut(s)	49
Bbv12I	GWGCWC	1 cut(s)	34
BbvI	GCAGC	2 cut(s)	21, 241
BccI	CCATC	1 cut(s)	132
BceAI	ACGGC	1 cut(s)	67
BcoDI	GTCTC	1 cut(s)	41
BisI	GCNGC	2 cut(s)	10, 255
BlsI	GCNGC	2 cut(s)	11, 256
BmiI	GGNNCC	1 cut(s)	81
BmsI	GCATC	1 cut(s)	61
BpmI	CTGGAG	1 cut(s)	182
Bsc4I	CCNNNNNNNGG	1 cut(s)	65
Bse1I	ACTGG	1 cut(s)	165
BseGI	GGATG	1 cut(s)	76
BseLI	CCNNNNNNNGG	1 cut(s)	65
BseNI	ACTGG	1 cut(s)	165
BseXI	GCAGC	2 cut(s)	21, 241
BsgI	GTGCAG	1 cut(s)	240
BshFI	GGCC	2 cut(s)	58, 123
BsiHKAI	GWGCWC	1 cut(s)	34
BslI	CCNNNNNNNGG	1 cut(s)	65
BsmAI	GTCTC	1 cut(s)	41
BsmBI	CGTCTC	1 cut(s)	41
BsnI	GGCC	2 cut(s)	58, 123
Bsp1286I	GDGCHC	1 cut(s)	34
BspANI	GGCC	2 cut(s)	58, 123
BspLI	GGNNCC	1 cut(s)	81
BsrI	ACTGG	1 cut(s)	165
Bst4CI	ACNGT	1 cut(s)	50
Bst6I	CTCTTC	1 cut(s)	161
BstF5I	GGATG	1 cut(s)	76
BstMAI	GTCTC	1 cut(s)	41
BstMWI	GCNNNNNNNGC	1 cut(s)	260
BstNSI	RCATGY	1 cut(s)	193
BstV1I	GCAGC	2 cut(s)	21, 241
BsuRI	GGCC	2 cut(s)	58, 123
BtsCI	GGATG	1 cut(s)	76
Csp6I	GTAC	1 cut(s)	176
CviAII	CATG	2 cut(s)	190, 264
CviJI	RGCY	5 cut(s)	12, 58, 82, 123, 186
CviKI_1	RGCY	5 cut(s)	12, 58, 82, 123, 186
CviQI	GTAC	1 cut(s)	176
Eam1104I	CTCTTC	1 cut(s)	161
EarI	CTCTTC	1 cut(s)	161
Esp3I	CGTCTC	1 cut(s)	41
FaeI	CATG	2 cut(s)	193, 267
FaiI	YATR	8 cut(s)	87, 89, 138, 183, 191, 217, 219, 265
FatI	CATG	2 cut(s)	189, 263
Fnu4HI	GCNGC	2 cut(s)	10, 255
FokI	GGATG	1 cut(s)	83
Fsp4HI	GCNGC	2 cut(s)	10, 255
GluI	GCNGC	2 cut(s)	10, 255
GsuI	CTGGAG	1 cut(s)	182
HaeIII	GGCC	2 cut(s)	58, 123
Hin1II	CATG	2 cut(s)	193, 267
HinfI	GANTC	2 cut(s)	91, 229
Hpy188I	TCNGA	2 cut(s)	96, 150
Hpy188III	TCNNGA	1 cut(s)	42
Hpy99I	CGWCG	1 cut(s)	30
HpyAV	CCTTC	2 cut(s)	32, 137
HpyCH4III	ACNGT	1 cut(s)	50
HpyCH4IV	ACGT	1 cut(s)	174
HpyCH4V	TGCA	1 cut(s)	257
HpyF10VI	GCNNNNNNNGC	1 cut(s)	260
HpySE526I	ACGT	1 cut(s)	174
Hsp92II	CATG	2 cut(s)	193, 267
LmnI	GCTCC	1 cut(s)	79
LpnPI	CCDG	2 cut(s)	146, 245
Lsp1109I	GCAGC	2 cut(s)	21, 241
LweI	GCATC	1 cut(s)	61
MaeII	ACGT	1 cut(s)	174
MaeIII	GTNAC	1 cut(s)	170
MboII	GAAGA	1 cut(s)	178
MhlI	GDGCHC	1 cut(s)	34
MluCI	AATT	1 cut(s)	242
MlyI	GAGTC	1 cut(s)	100
MnlI	CCTC	1 cut(s)	113
MroXI	GAANNNNTTC	1 cut(s)	49
MseI	TTAA	1 cut(s)	246
MslI	CAYNNNNRTG	1 cut(s)	262
MwoI	GCNNNNNNNGC	1 cut(s)	260
NlaIII	CATG	2 cut(s)	193, 267
NlaIV	GGNNCC	1 cut(s)	81
NmuCI	GTSAC	1 cut(s)	170
NspI	RCATGY	1 cut(s)	193
PciI	ACATGT	1 cut(s)	189
PcsI	WCGNNNNNNNCGW	2 cut(s)	31, 40
PdmI	GAANNNNTTC	1 cut(s)	49
PfeI	GAWTC	1 cut(s)	229
PflMI	CCANNNNNTGG	1 cut(s)	65
PkrI	GCNGC	2 cut(s)	11, 256
PleI	GAGTC	1 cut(s)	99
PpsI	GAGTC	1 cut(s)	99
PscI	ACATGT	1 cut(s)	189
PspN4I	GGNNCC	1 cut(s)	81
RsaI	GTAC	1 cut(s)	177
RsaNI	GTAC	1 cut(s)	176
RseI	CAYNNNNRTG	1 cut(s)	262
SaqAI	TTAA	1 cut(s)	246
SatI	GCNGC	2 cut(s)	10, 255
SchI	GAGTC	1 cut(s)	100
SduI	GDGCHC	1 cut(s)	34
SetI	ASST	3 cut(s)	148, 177, 241
SfaNI	GCATC	1 cut(s)	61
SgeI	CNNG	9 cut(s)	18, 41, 45, 54, 66, 173, 202, 215, 272
SmiMI	CAYNNNNRTG	1 cut(s)	262
Sse9I	AATT	1 cut(s)	242
TaaI	ACNGT	1 cut(s)	50
TaiI	ACGT	1 cut(s)	177
TaqI	TCGA	3 cut(s)	43, 130, 195
TasI	AATT	1 cut(s)	242
TfiI	GAWTC	1 cut(s)	229
Tru1I	TTAA	1 cut(s)	246
Tru9I	TTAA	1 cut(s)	246
TseFI	GTSAC	1 cut(s)	170
TseI	GCWGC	2 cut(s)	9, 254
Tsp45I	GTSAC	1 cut(s)	170
TspDTI	ATGAA	2 cut(s)	101, 213
Van91I	CCANNNNNTGG	1 cut(s)	65
XapI	RAATTY	1 cut(s)	242
XceI	RCATGY	1 cut(s)	193
XmnI	GAANNNNTTC	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.