Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0004933

Physical Location & Seq

Genomic Coordinates Forward (+)

220977 .. 222772

Gene Structure 1796 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1003900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGCACAACTCTTCAGTTACACGGCCTGCAGACAGTTGTCTCAGATGTTCCTGGCAGTAATCTTTTTTCATGGTTCTGAATACATTTTAGCAGTTGGCATTCACGGGAGATCAAACGTTACTCTTAAGTCTCTTCTGATCAGCAAACACTATCTTCTTGCCATGGTTTTTTCCTTGCTGGAATACTGTGTTGAAATTATTTTGTTCCCTGGTCTGAAGGAACACTGGTGGATCAGCAACTTAGGCTTTGCAATGGTCATAATAGGCGAAATCATACGGAAGATGGCAATAATTACGGCTGGTCAGTCCTTCACACATCTTATAAGGACTCATCCCTCAGAGCATCACCGATTGATTACGAATGGAATTTATAGAGTTGTTCGTCATCCTGGTTACTGTGGTTTCTTCATATGGTCGGTGGGTACTCAGATAATGCTCTGTAATCCCATATCAACAATTGCATTTGCACTTGTAGTTTGGCGCTTCTTTGCACAAAGGATTCCGTATGAAGAGTATTTCTTGAGGCAGTTTTTTGGGTCGCAGTATGAGGAATATGGCCGACGGATTCCTTCCGGGGTGCCTTTTGTAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003880 GO:0004671 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006479 GO:0006481 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008213 GO:0008276 GO:0008757 GO:0009787 GO:0009788 GO:0009791 GO:0009908 GO:0009966 GO:0009968 GO:0009987 GO:0010340 GO:0010646 GO:0010648 GO:0012505 GO:0016740 GO:0016741 GO:0018410 GO:0019538 GO:0022414 GO:0023051 GO:0023057 GO:0032259 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048367 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051998 GO:0061458 GO:0065007 GO:0071704 GO:0090567 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

ICMT

Protein Analysis

198

Amino Acids

22.83

Weight (kDa)

9.41

Isoelectric Point (pI)

32.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEMT	PF04191	81 - 180	5.7e-12	Phospholipid methyltransferase
ICMT	PF04140	84 - 174	5e-29	Isoprenylcysteine carboxyl methyltransferase (ICMT) family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004933)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08335 AT5G08335 AT5G23320 AT5G23320
malus_domestica	MD11G1238800.v1.1 MD13G1003500.v1.1 MD16G1003900.v1.1
prunus_persica	Prupe.1G348900_v2.0.a1 Prupe.1G348900_v2.0.a1
pyrus_communis	pycom13g00300 pycom16g00210
rosa_chinensis	RchiOBHm_Chr1g0318061 RchiOBHm_Chr1g0318091 RchiOBHm_Chr1g0318101 RchiOBHm_Chr4g0446911
rosa_laevigata	RLG00000005622 RLG00000030561 RLG00000030567
rosa_multiflora	Rmu_sc0001753.1_g000011 Rmu_sc0011424.1_g000010 Rmu_sc0011539.1_g000006
rosa_roxburghii	Rroxscaffold_4G00329550 Rroxscaffold_4G00329600
rosa_rugosa	Rorug04G0375900
rosa_samantha	Rh4AG437100 Rh4BG446300 Rh4CG463600 Rh4DG444900
rosa_wichuraiana	Rw1G002410 Rw4G037400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	323
AccB1I	GGYRCC	1 cut(s)	577
AclI	AACGTT	1 cut(s)	117
AclWI	GGATC	1 cut(s)	239
AcoI	YGGCCR	1 cut(s)	556
AcsI	RAATTY	1 cut(s)	366
AcuI	CTGAAG	1 cut(s)	236
AfaI	GTAC	1 cut(s)	424
AflII	CTTAAG	1 cut(s)	125
AgsI	TTSAA	1 cut(s)	194
AjnI	CCWGG	3 cut(s)	51, 208, 388
Alw26I	GTCTC	2 cut(s)	45, 135
AlwI	GGATC	1 cut(s)	239
AoxI	GGCC	2 cut(s)	24, 556
ApoI	RAATTY	1 cut(s)	366
AspLEI	GCGC	1 cut(s)	483
AsuC2I	CCSGG	1 cut(s)	574
AsuHPI	GGTGA	1 cut(s)	338
BanI	GGYRCC	1 cut(s)	577
BccI	CCATC	1 cut(s)	277
BceAI	ACGGC	2 cut(s)	39, 312
BciT130I	CCWGG	3 cut(s)	53, 210, 390
BclI	TGATCA	1 cut(s)	138
BcnI	CCSGG	1 cut(s)	574
BcoDI	GTCTC	2 cut(s)	45, 135
BfmI	CTRYAG	1 cut(s)	28
BfoI	RGCGCY	1 cut(s)	484
BfrI	CTTAAG	1 cut(s)	125
Bme1390I	CCNGG	4 cut(s)	53, 210, 390, 574
BmiI	GGNNCC	1 cut(s)	579
BmrFI	CCNGG	4 cut(s)	53, 210, 390, 574
BmsI	GCATC	1 cut(s)	352
BoxI	GACNNNNGTC	1 cut(s)	37
BpuEI	CTTGAG	1 cut(s)	541
BpuMI	CCSGG	1 cut(s)	574
BsaJI	CCNNGG	3 cut(s)	162, 208, 573
Bse1I	ACTGG	1 cut(s)	230
Bse3DI	GCAATG	1 cut(s)	258
BseBI	CCWGG	3 cut(s)	53, 210, 390
BseDI	CCNNGG	3 cut(s)	162, 208, 573
BseGI	GGATG	2 cut(s)	331, 385
BseMI	GCAATG	1 cut(s)	258
BseMII	CTCAG	3 cut(s)	56, 351, 440
BseNI	ACTGG	1 cut(s)	230
BshFI	GGCC	2 cut(s)	26, 558
BshNI	GGYRCC	1 cut(s)	577
BsiSI	CCGG	1 cut(s)	573
BsmAI	GTCTC	2 cut(s)	45, 135
BsmI	GAATGC	1 cut(s)	99
BsnI	GGCC	2 cut(s)	26, 558
Bsp143I	GATC	3 cut(s)	110, 138, 231
Bsp19I	CCATGG	1 cut(s)	162
BspANI	GGCC	2 cut(s)	26, 558
BspCNI	CTCAG	3 cut(s)	55, 350, 439
BspLI	GGNNCC	1 cut(s)	579
BspMAI	CTGCAG	1 cut(s)	32
BspPI	GGATC	1 cut(s)	239
BspT107I	GGYRCC	1 cut(s)	577
BspTI	CTTAAG	1 cut(s)	125
BsrDI	GCAATG	1 cut(s)	258
BsrI	ACTGG	1 cut(s)	230
BssECI	CCNNGG	3 cut(s)	162, 208, 573
BssMI	GATC	3 cut(s)	110, 138, 231
BssT1I	CCWWGG	1 cut(s)	162
Bst2UI	CCWGG	3 cut(s)	53, 210, 390
Bst4CI	ACNGT	3 cut(s)	36, 188, 398
Bst6I	CTCTTC	3 cut(s)	17, 138, 504
BstAFI	CTTAAG	1 cut(s)	125
BstC8I	GCNNGC	1 cut(s)	28
BstDEI	CTNAG	4 cut(s)	42, 241, 337, 426
BstDSI	CCRYGG	1 cut(s)	162
BstF5I	GGATG	2 cut(s)	331, 385
BstH2I	RGCGCY	1 cut(s)	484
BstHHI	GCGC	1 cut(s)	483
BstKTI	GATC	3 cut(s)	113, 141, 234
BstMAI	GTCTC	2 cut(s)	45, 135
BstMBI	GATC	3 cut(s)	110, 138, 231
BstMWI	GCNNNNNNNGC	1 cut(s)	243
BstNI	CCWGG	3 cut(s)	53, 210, 390
BstPAI	GACNNNNGTC	1 cut(s)	37
BstSCI	CCNGG	4 cut(s)	51, 208, 388, 572
BstSFI	CTRYAG	1 cut(s)	28
BsuRI	GGCC	2 cut(s)	26, 558
BtgI	CCRYGG	1 cut(s)	162
BtsCI	GGATG	2 cut(s)	331, 385
BtsIMutI	CAGTG	1 cut(s)	223
Cac8I	GCNNGC	1 cut(s)	28
CfoI	GCGC	1 cut(s)	483
Csp6I	GTAC	1 cut(s)	423
CviAII	CATG	2 cut(s)	71, 163
CviJI	RGCY	4 cut(s)	26, 246, 299, 558
CviKI_1	RGCY	4 cut(s)	26, 246, 299, 558
CviQI	GTAC	1 cut(s)	423
DdeI	CTNAG	4 cut(s)	42, 241, 337, 426
DpnI	GATC	3 cut(s)	112, 140, 233
DpnII	GATC	3 cut(s)	110, 138, 231
EaeI	YGGCCR	1 cut(s)	556
Eam1104I	CTCTTC	3 cut(s)	17, 138, 504
EarI	CTCTTC	3 cut(s)	17, 138, 504
Eco130I	CCWWGG	1 cut(s)	162
Eco57I	CTGAAG	1 cut(s)	236
EcoRII	CCWGG	3 cut(s)	51, 208, 388
EcoT14I	CCWWGG	1 cut(s)	162
ErhI	CCWWGG	1 cut(s)	162
FaeI	CATG	2 cut(s)	74, 166
FatI	CATG	2 cut(s)	70, 162
FauNDI	CATATG	1 cut(s)	410
FbaI	TGATCA	1 cut(s)	138
FokI	GGATG	2 cut(s)	318, 372
GlaI	GCGC	1 cut(s)	482
HaeII	RGCGCY	1 cut(s)	484
HaeIII	GGCC	2 cut(s)	26, 558
HapII	CCGG	1 cut(s)	573
HhaI	GCGC	1 cut(s)	483
Hin1II	CATG	2 cut(s)	74, 166
Hin6I	GCGC	1 cut(s)	481
HinP1I	GCGC	1 cut(s)	481
HinfI	GANTC	3 cut(s)	328, 499, 565
HpaII	CCGG	1 cut(s)	573
HphI	GGTGA	1 cut(s)	338
Hpy188I	TCNGA	6 cut(s)	45, 79, 138, 216, 340, 429
Hpy188III	TCNNGA	1 cut(s)	520
Hpy99I	CGWCG	1 cut(s)	564
HpyAV	CCTTC	3 cut(s)	211, 319, 579
HpyCH4III	ACNGT	3 cut(s)	36, 188, 398
HpyCH4IV	ACGT	1 cut(s)	117
HpyCH4V	TGCA	5 cut(s)	30, 251, 461, 467, 491
HpyF10VI	GCNNNNNNNGC	1 cut(s)	243
HpyF3I	CTNAG	4 cut(s)	42, 241, 337, 426
HpySE526I	ACGT	1 cut(s)	117
Hsp92II	CATG	2 cut(s)	74, 166
HspAI	GCGC	1 cut(s)	481
Ksp22I	TGATCA	1 cut(s)	138
Kzo9I	GATC	3 cut(s)	110, 138, 231
LweI	GCATC	1 cut(s)	352
MaeII	ACGT	1 cut(s)	117
MaeIII	GTNAC	3 cut(s)	17, 118, 392
MalI	GATC	3 cut(s)	112, 140, 233
MboI	GATC	3 cut(s)	110, 138, 231
MboII	GAAGA	6 cut(s)	4, 125, 146, 292, 397, 521
MfeI	CAATTG	1 cut(s)	456
MluCI	AATT	4 cut(s)	195, 291, 366, 456
MlyI	GAGTC	1 cut(s)	322
MnlI	CCTC	3 cut(s)	346, 516, 541
MseI	TTAA	1 cut(s)	126
MspCI	CTTAAG	1 cut(s)	125
MspI	CCGG	1 cut(s)	573
MspR9I	CCNGG	4 cut(s)	53, 210, 390, 574
MunI	CAATTG	1 cut(s)	456
Mva1269I	GAATGC	1 cut(s)	99
MvaI	CCWGG	3 cut(s)	53, 210, 390
MwoI	GCNNNNNNNGC	1 cut(s)	243
NciI	CCSGG	1 cut(s)	574
NcoI	CCATGG	1 cut(s)	162
NdeI	CATATG	1 cut(s)	410
NdeII	GATC	3 cut(s)	110, 138, 231
NlaIII	CATG	2 cut(s)	74, 166
NlaIV	GGNNCC	1 cut(s)	579
PctI	GAATGC	1 cut(s)	99
PfeI	GAWTC	2 cut(s)	499, 565
PleI	GAGTC	1 cut(s)	322
PpsI	GAGTC	1 cut(s)	322
PshAI	GACNNNNGTC	1 cut(s)	37
PsiI	TTATAA	1 cut(s)	323
Psp1406I	AACGTT	1 cut(s)	117
Psp6I	CCWGG	3 cut(s)	51, 208, 388
PspGI	CCWGG	3 cut(s)	51, 208, 388
PspN4I	GGNNCC	1 cut(s)	579
PstI	CTGCAG	1 cut(s)	32
RsaI	GTAC	1 cut(s)	424
RsaNI	GTAC	1 cut(s)	423
SaqAI	TTAA	1 cut(s)	126
Sau3AI	GATC	3 cut(s)	110, 138, 231
SchI	GAGTC	1 cut(s)	322
ScrFI	CCNGG	4 cut(s)	53, 210, 390, 574
SetI	ASST	1 cut(s)	120
SfaNI	GCATC	1 cut(s)	352
SfcI	CTRYAG	1 cut(s)	28
SmlI	CTYRAG	2 cut(s)	125, 520
SmoI	CTYRAG	2 cut(s)	125, 520
Sse9I	AATT	4 cut(s)	195, 291, 366, 456
StyD4I	CCNGG	4 cut(s)	51, 208, 388, 572
StyI	CCWWGG	1 cut(s)	162
TaaI	ACNGT	3 cut(s)	36, 188, 398
TaiI	ACGT	1 cut(s)	120
TasI	AATT	4 cut(s)	195, 291, 366, 456
TfiI	GAWTC	2 cut(s)	499, 565
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TscAI	CASTG	1 cut(s)	230
TspDTI	ATGAA	3 cut(s)	59, 397, 522
TspGWI	ACGGA	3 cut(s)	292, 492, 577
TspRI	CASTG	1 cut(s)	230
Vha464I	CTTAAG	1 cut(s)	125
XapI	RAATTY	1 cut(s)	366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.