Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011424.1

Orthogroup ID

OG0004933

Physical Location & Seq

Genomic Coordinates Reverse (-)

32315 .. 33880

Gene Structure 1566 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011424.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

atgtccgcggacatggcgaaagatggatatgaagacataatgaacattgacatctcatcagtggctatcaacctcatgaagaccagaaacaagcacattcctcagttgaaaggtaaccaaactcctcgttggaatctctacccactacagttctatgttgtattgtctatgtataagcagcagaaaagatgggccgatgggtcacagagagcttctaaagttgttgcttactatggcttgaaggaaccaccttataaacttgatgctttggaaccgtatatgagtcagaggacattggaggttcattgcggaggccatcatcgtaacttcttggaaggtttgaacaaacagctagagaagagtgacatactgtatggctacacttttgatgtacttgtcaaagcaacatattataatgggaatcccttaactgaatttaacaacactgcccgggtatcaacttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000303 GO:0000305 GO:0003674 GO:0003824 GO:0004784 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006801 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009636 GO:0009987 GO:0010035 GO:0016209 GO:0016491 GO:0016721 GO:0019430 GO:0033554 GO:0034599 GO:0034614 GO:0042221 GO:0042644 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071450 GO:0071451 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1901701 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04013 ko04068 ko04146 ko04211 ko04212 ko04213 ko05016 map04013 map04068 map04146 map04211 map04212 map04213 map05016

Pfam Domains

Protein Families

Sod_Fe_C Sod_Fe_N

Protein Analysis

154

Amino Acids

17.81

Weight (kDa)

9.06

Isoelectric Point (pI)

53.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004933)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08335 AT5G08335 AT5G23320 AT5G23320
malus_domestica	MD11G1238800.v1.1 MD13G1003500.v1.1 MD16G1003900.v1.1
prunus_persica	Prupe.1G348900_v2.0.a1 Prupe.1G348900_v2.0.a1
pyrus_communis	pycom13g00300 pycom16g00210
rosa_chinensis	RchiOBHm_Chr1g0318061 RchiOBHm_Chr1g0318091 RchiOBHm_Chr1g0318101 RchiOBHm_Chr4g0446911
rosa_laevigata	RLG00000005622 RLG00000030561 RLG00000030567
rosa_multiflora	Rmu_sc0001753.1_g000011 Rmu_sc0011424.1_g000010 Rmu_sc0011539.1_g000006
rosa_roxburghii	Rroxscaffold_4G00329550 Rroxscaffold_4G00329600
rosa_rugosa	Rorug04G0375900
rosa_samantha	Rh4AG437100 Rh4BG446300 Rh4CG463600 Rh4DG444900
rosa_wichuraiana	Rw1G002410 Rw4G037400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	255, 414
AccII	CGCG	1 cut(s)	8
AciI	CCGC	3 cut(s)	6, 8, 309
AcsI	RAATTY	1 cut(s)	434
AfaI	GTAC	1 cut(s)	393
AgsI	TTSAA	3 cut(s)	109, 241, 343
AluBI	AGCT	2 cut(s)	212, 352
AluI	AGCT	2 cut(s)	212, 352
Ama87I	CYCGRG	1 cut(s)	450
AoxI	GGCC	2 cut(s)	192, 313
ApeKI	GCWGC	1 cut(s)	178
ApoI	RAATTY	1 cut(s)	434
AspS9I	GGNCC	1 cut(s)	192
AsuC2I	CCSGG	2 cut(s)	451, 452
AvaI	CYCGRG	1 cut(s)	450
BbsI	GAAGAC	2 cut(s)	39, 86
BbvI	GCAGC	1 cut(s)	190
BccI	CCATC	4 cut(s)	17, 183, 191, 324
BcnI	CCSGG	2 cut(s)	451, 452
BfaI	CTAG	1 cut(s)	353
BfmI	CTRYAG	1 cut(s)	146
BisI	GCNGC	1 cut(s)	179
BlsI	GCNGC	1 cut(s)	180
Bme1390I	CCNGG	2 cut(s)	451, 452
BmeT110I	CYCGRG	1 cut(s)	450
BmgT120I	GGNCC	1 cut(s)	192
BmiI	GGNNCC	2 cut(s)	246, 273
BmrFI	CCNGG	2 cut(s)	451, 452
BmsI	GCATC	1 cut(s)	253
BpiI	GAAGAC	2 cut(s)	39, 86
BpuMI	CCSGG	2 cut(s)	451, 452
BsaJI	CCNNGG	2 cut(s)	6, 450
Bse3DI	GCAATG	1 cut(s)	304
BseDI	CCNNGG	2 cut(s)	6, 450
BseMI	GCAATG	1 cut(s)	304
BseMII	CTCAG	1 cut(s)	116
BseRI	GAGGAG	1 cut(s)	114
BseXI	GCAGC	1 cut(s)	190
Bsh1236I	CGCG	1 cut(s)	8
BshFI	GGCC	2 cut(s)	194, 315
BsiHKCI	CYCGRG	1 cut(s)	450
BsiSI	CCGG	1 cut(s)	451
BsnI	GGCC	2 cut(s)	194, 315
BsoBI	CYCGRG	1 cut(s)	450
BspACI	CCGC	3 cut(s)	6, 8, 309
BspANI	GGCC	2 cut(s)	194, 315
BspCNI	CTCAG	1 cut(s)	115
BspFNI	CGCG	1 cut(s)	8
BspHI	TCATGA	1 cut(s)	75
BspLI	GGNNCC	2 cut(s)	246, 273
BsrDI	GCAATG	1 cut(s)	304
BssECI	CCNNGG	2 cut(s)	6, 450
Bst4CI	ACNGT	3 cut(s)	150, 276, 372
Bst6I	CTCTTC	1 cut(s)	353
BstDEI	CTNAG	2 cut(s)	102, 462
BstDSI	CCRYGG	1 cut(s)	6
BstEII	GGTNACC	1 cut(s)	113
BstFNI	CGCG	1 cut(s)	8
BstMWI	GCNNNNNNNGC	1 cut(s)	14
BstPI	GGTNACC	1 cut(s)	113
BstSCI	CCNGG	2 cut(s)	449, 450
BstSFI	CTRYAG	1 cut(s)	146
BstUI	CGCG	1 cut(s)	8
BstV1I	GCAGC	1 cut(s)	190
BstV2I	GAAGAC	2 cut(s)	39, 86
BsuRI	GGCC	2 cut(s)	194, 315
BtgI	CCRYGG	1 cut(s)	6
BtsI	GCAGTG	1 cut(s)	444
BtsIMutI	CAGTG	2 cut(s)	66, 444
CciI	TCATGA	1 cut(s)	75
Cfr13I	GGNCC	1 cut(s)	192
Cfr42I	CCGCGG	1 cut(s)	9
Cfr9I	CCCGGG	1 cut(s)	450
Csp6I	GTAC	1 cut(s)	392
CviAII	CATG	2 cut(s)	13, 76
CviJI	RGCY	7 cut(s)	65, 194, 212, 237, 315, 352, 378
CviKI_1	RGCY	7 cut(s)	65, 194, 212, 237, 315, 352, 378
CviQI	GTAC	1 cut(s)	392
DdeI	CTNAG	2 cut(s)	102, 462
Eam1104I	CTCTTC	1 cut(s)	353
EarI	CTCTTC	1 cut(s)	353
Eco88I	CYCGRG	1 cut(s)	450
Eco91I	GGTNACC	1 cut(s)	113
EcoO65I	GGTNACC	1 cut(s)	113
FaeI	CATG	2 cut(s)	16, 79
FatI	CATG	2 cut(s)	12, 75
Fnu4HI	GCNGC	1 cut(s)	179
Fsp4HI	GCNGC	1 cut(s)	179
FspBI	CTAG	1 cut(s)	353
GluI	GCNGC	1 cut(s)	179
HaeIII	GGCC	2 cut(s)	194, 315
HapII	CCGG	1 cut(s)	451
Hin1II	CATG	2 cut(s)	16, 79
HinfI	GANTC	3 cut(s)	133, 283, 421
HpaII	CCGG	1 cut(s)	451
Hpy188I	TCNGA	1 cut(s)	288
Hpy188III	TCNNGA	1 cut(s)	76
HpyAV	CCTTC	2 cut(s)	235, 329
HpyCH4III	ACNGT	3 cut(s)	150, 276, 372
HpyF10VI	GCNNNNNNNGC	1 cut(s)	14
HpyF3I	CTNAG	2 cut(s)	102, 462
Hsp92II	CATG	2 cut(s)	16, 79
KspI	CCGCGG	1 cut(s)	9
LpnPI	CCDG	1 cut(s)	97
Lsp1109I	GCAGC	1 cut(s)	190
LweI	GCATC	1 cut(s)	253
MaeI	CTAG	1 cut(s)	353
MaeIII	GTNAC	4 cut(s)	113, 201, 323, 362
MboII	GAAGA	3 cut(s)	44, 91, 370
MluCI	AATT	1 cut(s)	434
MlyI	GAGTC	1 cut(s)	292
MmeI	TCCRAC	1 cut(s)	110
MnlI	CCTC	6 cut(s)	83, 111, 135, 282, 292, 305
MseI	TTAA	2 cut(s)	428, 438
MspA1I	CMGCKG	1 cut(s)	8
MspI	CCGG	1 cut(s)	451
MspR9I	CCNGG	2 cut(s)	451, 452
MvnI	CGCG	1 cut(s)	8
MwoI	GCNNNNNNNGC	1 cut(s)	14
NciI	CCSGG	2 cut(s)	451, 452
NlaIII	CATG	2 cut(s)	16, 79
NlaIV	GGNNCC	2 cut(s)	246, 273
NmuCI	GTSAC	2 cut(s)	201, 362
PagI	TCATGA	1 cut(s)	75
PfeI	GAWTC	2 cut(s)	133, 421
PkrI	GCNGC	1 cut(s)	180
PleI	GAGTC	1 cut(s)	291
PpsI	GAGTC	1 cut(s)	291
PsiI	TTATAA	2 cut(s)	255, 414
PspEI	GGTNACC	1 cut(s)	113
PspN4I	GGNNCC	2 cut(s)	246, 273
PspPI	GGNCC	1 cut(s)	192
RsaI	GTAC	1 cut(s)	393
RsaNI	GTAC	1 cut(s)	392
SacII	CCGCGG	1 cut(s)	9
SaqAI	TTAA	2 cut(s)	428, 438
SatI	GCNGC	1 cut(s)	179
Sau96I	GGNCC	1 cut(s)	192
SchI	GAGTC	1 cut(s)	292
ScrFI	CCNGG	2 cut(s)	451, 452
SetI	ASST	7 cut(s)	75, 115, 214, 253, 303, 340, 354
SfaNI	GCATC	1 cut(s)	253
SfcI	CTRYAG	1 cut(s)	146
Sfr303I	CCGCGG	1 cut(s)	9
SgrBI	CCGCGG	1 cut(s)	9
SmaI	CCCGGG	1 cut(s)	452
Sse9I	AATT	1 cut(s)	434
SsiI	CCGC	3 cut(s)	6, 8, 309
SspMI	CTAG	1 cut(s)	353
StyD4I	CCNGG	2 cut(s)	449, 450
TaaI	ACNGT	3 cut(s)	150, 276, 372
TasI	AATT	1 cut(s)	434
TatI	WGTACW	1 cut(s)	391
TfiI	GAWTC	2 cut(s)	133, 421
Tru1I	TTAA	2 cut(s)	428, 438
Tru9I	TTAA	2 cut(s)	428, 438
TscAI	CASTG	2 cut(s)	66, 451
TseFI	GTSAC	2 cut(s)	201, 362
TseI	GCWGC	1 cut(s)	178
Tsp45I	GTSAC	2 cut(s)	201, 362
TspDTI	ATGAA	4 cut(s)	45, 56, 92, 293
TspMI	CCCGGG	1 cut(s)	450
TspRI	CASTG	2 cut(s)	66, 451
XapI	RAATTY	1 cut(s)	434
XmaI	CCCGGG	1 cut(s)	450
XspI	CTAG	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.