Rmu_sc0001753.1_g000011

Superoxide dismutase fe

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001753.1
Physical Location & Seq
Reverse (-)
62670 .. 67966
5297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001753.1_g000011.1.cds

Sequence Viewer

Length: 1539 bp
atgttatcctcttcttctcctccaagctctcatcttttgttgactcactcttctcactgttttaagactcccaacctttctcatcatcagtgtaagcagcagaaaagatggacccatgggtcacagagagcttctagagttgttgcttactatggcttgaaggaaccaccttataaacttgatgctttggaaccctatatgagtcagaggacattggaggttcactggggaggccatcatcgtaactacttggaaggtttgaacaaacagctagagaagagtgacatactgtatggctacacttttgatgaacttgtcaaagcaacatataataatgggaatcccttaccagaatttaacaacgctgcccaggtctggaatcatgacttcttttgggaatccatgcaacctggaggaggggacatgcccaaactaggtgtacttgagcagattgaaaaggattttggttcctatacaagtttcagagagaagtttatagaggcagcgctaactctatttggctcaggctgggtttggcttgttttaaagagagaagagagacaactcaagatagttagaacttcaaatgccatttgcccacttgtctgggatgacataccgataatctgtttggatatgtgggagcatgcttattatctggattacaagaatgagagaggaaagtatgtggatgcatttatgaaccatcttgtgtcttggaatgcggcaatggtgcgcatggcccagcagcagcagcagatcgctccggccagtcattcattaatcatcatcatcatcatcaggaggaggatgtccttcttgaagcatgtttgcgttgatattcagagacaattttcggtcttcatctcatataccgtttcatcctttgcaggtctcacttccgtgcagcagagccaaatcttgattcacccttttgtaacaaagatggagcaagtcttcacttacacagcttgccgacagttgtctcagatgtttgcggcgttgatcttttttcatgtttcagaatacattttagcagccagcattcatgggaaaacaaatgttactctaaaatctcttctgatcagcaaaaactaccttgttgcgatgatcttttccttgctggagtactttattgaaatcattttgttccctggtctgaaggagcactggtggatcagcaactcaggccttgcaatggttataataggggaaatcattcggaagatggcaataatcacagctggtcgctcattcacacatctcataaggactcgtccctctgagcatcaccagttggttacgaatggaatttatagacttgttcgtcatccaggttactgtggtttcttcatctggtcagtgggcactcagataatgctttgtaatcccatgtcaacaattgcatttgcactcgtagtttggcgcttctttgaacaaagaattccttatgaagagttctacttgaggcagttttttgggtcacagtatgaggaatatgggaggcgggttccttctggggtgccttttgtgaagtga

Protein Analysis

512

Amino Acids

59.45

Weight (kDa)

9.05

Isoelectric Point (pI)

44.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 174, 1205
AasI GACNNNNNNGTC 2 cut(s) 118, 1326
Acc16I TGCGCA 1 cut(s) 737
Acc36I ACCTGC 1 cut(s) 881
AccB1I GGYRCC 1 cut(s) 1522
AciI CCGC 3 cut(s) 725, 998, 1507
AclWI GGATC 1 cut(s) 1184
AcoI YGGCCR 1 cut(s) 768
AcsI RAATTY 3 cut(s) 353, 1311, 1443
AcuI CTGAAG 1 cut(s) 1181
AfaI GTAC 2 cut(s) 441, 1130
AfeI AGCGCT 1 cut(s) 507
AfiI CCNNNNNNNGG 4 cut(s) 375, 416, 434, 1198
AgsI TTSAA 7 cut(s) 160, 262, 455, 585, 823, 1139, 1436
AjnI CCWGG 4 cut(s) 369, 409, 1153, 1333
AjuI GAANNNNNNNTTGG 4 cut(s) 447, 479, 909, 941
AleI CACNNNNGTG 1 cut(s) 902
AluBI AGCT 5 cut(s) 27, 131, 271, 971, 1244
AluI AGCT 5 cut(s) 27, 131, 271, 971, 1244
Alw21I GWGCWC 1 cut(s) 1170
Alw26I GTCTC 4 cut(s) 553, 841, 899, 990
AlwI GGATC 1 cut(s) 1184
Aor51HI AGCGCT 1 cut(s) 507
AoxI GGCC 4 cut(s) 232, 741, 768, 1189
ApeKI GCWGC 8 cut(s) 97, 365, 503, 748, 751, 754, 907, 1037
ApoI RAATTY 3 cut(s) 353, 1311, 1443
AseI ATTAAT 1 cut(s) 782
Asp700I GAANNNNTTC 1 cut(s) 1218
AspLEI GCGC 3 cut(s) 508, 738, 1428
AspS9I GGNCC 2 cut(s) 111, 742
AsuHPI GGTGA 2 cut(s) 920, 1283
AvaII GGWCC 1 cut(s) 111
BaeGI GKGCMC 1 cut(s) 1370
BanI GGYRCC 1 cut(s) 1522
BbsI GAAGAC 2 cut(s) 853, 949
Bbv12I GWGCWC 1 cut(s) 1170
BbvI GCAGC 8 cut(s) 109, 352, 515, 760, 763, 766, 919, 1049
BccI CCATC 5 cut(s) 102, 243, 714, 940, 1222
BciT130I CCWGG 4 cut(s) 371, 411, 1155, 1335
BclI TGATCA 1 cut(s) 1083
BcoDI GTCTC 4 cut(s) 553, 841, 899, 990
BfaI CTAG 3 cut(s) 135, 272, 434
BfoI RGCGCY 2 cut(s) 509, 1429
BfuAI ACCTGC 1 cut(s) 881
BmcAI AGTACT 1 cut(s) 1130
Bme1390I CCNGG 4 cut(s) 371, 411, 1155, 1335
Bme18I GGWCC 1 cut(s) 111
BmgT120I GGNCC 2 cut(s) 111, 742
BmiI GGNNCC 6 cut(s) 113, 165, 192, 469, 1512, 1524
BmrFI CCNGG 4 cut(s) 371, 411, 1155, 1335
BmrI ACTGGG 1 cut(s) 235
BmsI GCATC 3 cut(s) 172, 682, 1297
BmuI ACTGGG 1 cut(s) 235
BoxI GACNNNNGTC 1 cut(s) 982
BpiI GAAGAC 2 cut(s) 853, 949
BpmI CTGGAG 2 cut(s) 432, 1145
Bpu10I CCTNAGC 1 cut(s) 523
BpuEI CTTGAG 3 cut(s) 464, 551, 1486
BsaI GGTCTC 1 cut(s) 899
BsaJI CCNNGG 3 cut(s) 115, 369, 1153
BsaXI ACNNNNNCTCC 2 cut(s) 1157, 1187
Bsc4I CCNNNNNNNGG 4 cut(s) 375, 416, 434, 1198
Bse1I ACTGG 4 cut(s) 230, 771, 1175, 1294
Bse3DI GCAATG 2 cut(s) 735, 1203
BseBI CCWGG 4 cut(s) 371, 411, 1155, 1335
BseDI CCNNGG 3 cut(s) 115, 369, 1153
BseGI GGATG 5 cut(s) 616, 697, 816, 881, 1330
BseLI CCNNNNNNNGG 4 cut(s) 375, 416, 434, 1198
BseMI GCAATG 2 cut(s) 735, 1203
BseMII CTCAG 5 cut(s) 537, 1001, 1200, 1275, 1385
BseNI ACTGG 4 cut(s) 230, 771, 1175, 1294
BseRI GAGGAG 3 cut(s) 9, 429, 820
BseSI GKGCMC 1 cut(s) 1370
BseXI GCAGC 8 cut(s) 109, 352, 515, 760, 763, 766, 919, 1049
BseYI CCCAGC 2 cut(s) 528, 744
BsgI GTGCAG 1 cut(s) 926
BshFI GGCC 4 cut(s) 234, 743, 770, 1191
BshNI GGYRCC 1 cut(s) 1522
BsiHKAI GWGCWC 1 cut(s) 1170
BsiSI CCGG 1 cut(s) 767
BslFI GGGAC 2 cut(s) 434, 1263
BslI CCNNNNNNNGG 4 cut(s) 375, 416, 434, 1198
BsmAI GTCTC 4 cut(s) 553, 841, 899, 990
BsmFI GGGAC 2 cut(s) 434, 1263
BsmI GAATGC 2 cut(s) 727, 1044
BsnI GGCC 4 cut(s) 234, 743, 770, 1191
Bso31I GGTCTC 1 cut(s) 899
Bsp1286I GDGCHC 2 cut(s) 1170, 1370
Bsp143I GATC 5 cut(s) 759, 1005, 1083, 1110, 1176
Bsp19I CCATGG 1 cut(s) 115
BspACI CCGC 3 cut(s) 725, 998, 1507
BspANI GGCC 4 cut(s) 234, 743, 770, 1191
BspCNI CTCAG 5 cut(s) 536, 1000, 1199, 1276, 1384
BspHI TCATGA 1 cut(s) 382
BspLI GGNNCC 6 cut(s) 113, 165, 192, 469, 1512, 1524
BspMI ACCTGC 1 cut(s) 881
BspPI GGATC 1 cut(s) 1184
BspT107I GGYRCC 1 cut(s) 1522
BspTNI GGTCTC 1 cut(s) 899
BsrDI GCAATG 2 cut(s) 735, 1203
BsrI ACTGG 4 cut(s) 230, 771, 1175, 1294
BssECI CCNNGG 3 cut(s) 115, 369, 1153
BssMI GATC 5 cut(s) 759, 1005, 1083, 1110, 1176
BssT1I CCWWGG 1 cut(s) 115
Bst2UI CCWGG 4 cut(s) 371, 411, 1155, 1335
Bst4CI ACNGT 6 cut(s) 59, 291, 877, 981, 1343, 1488
Bst6I CTCTTC 6 cut(s) 16, 55, 272, 549, 1083, 1449
BstC8I GCNNGC 3 cut(s) 648, 973, 1042
BstDEI CTNAG 5 cut(s) 523, 987, 1186, 1284, 1371
BstDSI CCRYGG 1 cut(s) 115
BstENI CCTNNNNNAGG 1 cut(s) 414
BstF5I GGATG 5 cut(s) 616, 697, 816, 881, 1330
BstH2I RGCGCY 2 cut(s) 509, 1429
BstHHI GCGC 3 cut(s) 508, 738, 1428
BstKTI GATC 5 cut(s) 762, 1008, 1086, 1113, 1179
BstMAI GTCTC 4 cut(s) 553, 841, 899, 990
BstMBI GATC 5 cut(s) 759, 1005, 1083, 1110, 1176
BstMWI GCNNNNNNNGC 2 cut(s) 754, 1188
BstNI CCWGG 4 cut(s) 371, 411, 1155, 1335
BstNSI RCATGY 3 cut(s) 427, 650, 830
BstPAI GACNNNNGTC 1 cut(s) 982
BstSCI CCNGG 4 cut(s) 369, 409, 1153, 1333
BstSLI GKGCMC 1 cut(s) 1370
BstV1I GCAGC 8 cut(s) 109, 352, 515, 760, 763, 766, 919, 1049
BstV2I GAAGAC 2 cut(s) 853, 949
BstXI CCANNNNNNTGG 1 cut(s) 606
BsuRI GGCC 4 cut(s) 234, 743, 770, 1191
BtgI CCRYGG 1 cut(s) 115
BtgZI GCGATG 1 cut(s) 1121
BtsCI GGATG 5 cut(s) 616, 697, 816, 881, 1330
BtsIMutI CAGTG 5 cut(s) 55, 95, 223, 1168, 1368
BveI ACCTGC 1 cut(s) 881
Cac8I GCNNGC 3 cut(s) 648, 973, 1042
CciI TCATGA 1 cut(s) 382
CfoI GCGC 3 cut(s) 508, 738, 1428
Cfr13I GGNCC 2 cut(s) 111, 742
Csp6I GTAC 2 cut(s) 440, 1129
CviQI GTAC 2 cut(s) 440, 1129
DdeI CTNAG 5 cut(s) 523, 987, 1186, 1284, 1371
DpnI GATC 5 cut(s) 761, 1007, 1085, 1112, 1178
DpnII GATC 5 cut(s) 759, 1005, 1083, 1110, 1176
DraI TTTAAA 1 cut(s) 546
DrdI GACNNNNNNGTC 2 cut(s) 118, 1326
DseDI GACNNNNNNGTC 2 cut(s) 118, 1326
EaeI YGGCCR 1 cut(s) 768
Eam1104I CTCTTC 6 cut(s) 16, 55, 272, 549, 1083, 1449
EarI CTCTTC 6 cut(s) 16, 55, 272, 549, 1083, 1449
Eco130I CCWWGG 1 cut(s) 115
Eco147I AGGCCT 1 cut(s) 1191
Eco31I GGTCTC 1 cut(s) 899
Eco47I GGWCC 1 cut(s) 111
Eco47III AGCGCT 1 cut(s) 507
Eco57I CTGAAG 1 cut(s) 1181
EcoNI CCTNNNNNAGG 1 cut(s) 414
EcoRI GAATTC 1 cut(s) 1443
EcoRII CCWGG 4 cut(s) 369, 409, 1153, 1333
EcoT14I CCWWGG 1 cut(s) 115
EcoT22I ATGCAT 1 cut(s) 697
ErhI CCWWGG 1 cut(s) 115
FalI AAGNNNNNCTT 2 cut(s) 1432, 1464
FaqI GGGAC 2 cut(s) 434, 1263
FauI CCCGC 1 cut(s) 1500
FbaI TGATCA 1 cut(s) 1083
FokI GGATG 5 cut(s) 623, 704, 823, 868, 1317
FspAI RTGCGCAY 1 cut(s) 737
FspBI CTAG 3 cut(s) 135, 272, 434
FspI TGCGCA 1 cut(s) 737
GlaI GCGC 3 cut(s) 507, 737, 1427
GsaI CCCAGC 2 cut(s) 532, 748
GsuI CTGGAG 2 cut(s) 432, 1145
HaeII RGCGCY 2 cut(s) 509, 1429
HaeIII GGCC 4 cut(s) 234, 743, 770, 1191
HapII CCGG 1 cut(s) 767
HhaI GCGC 3 cut(s) 508, 738, 1428
Hin6I GCGC 3 cut(s) 506, 736, 1426
HinP1I GCGC 3 cut(s) 506, 736, 1426
HincII GTYRAC 2 cut(s) 42, 1398
HindII GTYRAC 2 cut(s) 42, 1398
HinfI GANTC 8 cut(s) 43, 67, 202, 340, 379, 398, 925, 1273
HpaII CCGG 1 cut(s) 767
HphI GGTGA 2 cut(s) 920, 1283
Hpy166II GTNNAC 4 cut(s) 42, 223, 440, 1398
Hpy188III TCNNGA 8 cut(s) 135, 376, 383, 568, 659, 802, 820, 922
Hpy8I GTNNAC 4 cut(s) 42, 223, 440, 1398
HpyAV CCTTC 5 cut(s) 154, 248, 826, 1156, 1524
HpyCH4III ACNGT 6 cut(s) 59, 291, 877, 981, 1343, 1488
HpyCH4V TGCA 7 cut(s) 406, 695, 890, 907, 1196, 1406, 1412
HpyF10VI GCNNNNNNNGC 2 cut(s) 754, 1188
HpyF3I CTNAG 5 cut(s) 523, 987, 1186, 1284, 1371
HspAI GCGC 3 cut(s) 506, 736, 1426
Ksp22I TGATCA 1 cut(s) 1083
Kzo9I GATC 5 cut(s) 759, 1005, 1083, 1110, 1176
LmnI GCTCC 4 cut(s) 643, 769, 949, 1165
Lsp1109I GCAGC 8 cut(s) 109, 352, 515, 760, 763, 766, 919, 1049
LweI GCATC 3 cut(s) 172, 682, 1297
MaeI CTAG 3 cut(s) 135, 272, 434
MaeIII GTNAC 8 cut(s) 120, 242, 281, 937, 1063, 1300, 1337, 1482
MalI GATC 5 cut(s) 761, 1007, 1085, 1112, 1178
MboI GATC 5 cut(s) 759, 1005, 1083, 1110, 1176
MfeI CAATTG 1 cut(s) 1401
MhlI GDGCHC 2 cut(s) 1170, 1370
MluCI AATT 5 cut(s) 353, 851, 1311, 1401, 1443
MlyI GAGTC 4 cut(s) 37, 61, 211, 1267
Mph1103I ATGCAT 1 cut(s) 697
MroXI GAANNNNTTC 1 cut(s) 1218
MseI TTAA 4 cut(s) 63, 357, 545, 782
MslI CAYNNNNRTG 1 cut(s) 902
MspA1I CMGCKG 1 cut(s) 1244
MspI CCGG 1 cut(s) 767
MspR9I CCNGG 4 cut(s) 371, 411, 1155, 1335
MunI CAATTG 1 cut(s) 1401
Mva1269I GAATGC 2 cut(s) 727, 1044
MvaI CCWGG 4 cut(s) 371, 411, 1155, 1335
MwoI GCNNNNNNNGC 2 cut(s) 754, 1188
NcoI CCATGG 1 cut(s) 115
NdeII GATC 5 cut(s) 759, 1005, 1083, 1110, 1176
NlaIV GGNNCC 6 cut(s) 113, 165, 192, 469, 1512, 1524
NmuCI GTSAC 3 cut(s) 120, 281, 1482
NsbI TGCGCA 1 cut(s) 737
NsiI ATGCAT 1 cut(s) 697
NspI RCATGY 3 cut(s) 427, 650, 830
OliI CACNNNNGTG 1 cut(s) 902
PaeI GCATGC 1 cut(s) 650
PagI TCATGA 1 cut(s) 382
PceI AGGCCT 1 cut(s) 1191
PctI GAATGC 2 cut(s) 727, 1044
PdmI GAANNNNTTC 1 cut(s) 1218
PfeI GAWTC 4 cut(s) 340, 379, 398, 925
PleI GAGTC 4 cut(s) 37, 61, 210, 1267
PpsI GAGTC 4 cut(s) 37, 61, 210, 1267
PshAI GACNNNNGTC 1 cut(s) 982
PshBI ATTAAT 1 cut(s) 782
PsiI TTATAA 2 cut(s) 174, 1205
Psp6I CCWGG 4 cut(s) 369, 409, 1153, 1333
PspFI CCCAGC 2 cut(s) 528, 744
PspGI CCWGG 4 cut(s) 369, 409, 1153, 1333
PspN4I GGNNCC 6 cut(s) 113, 165, 192, 469, 1512, 1524
PspPI GGNCC 2 cut(s) 111, 742
PvuII CAGCTG 1 cut(s) 1244
RsaI GTAC 2 cut(s) 441, 1130
RsaNI GTAC 2 cut(s) 440, 1129
RseI CAYNNNNRTG 1 cut(s) 902
SaqAI TTAA 4 cut(s) 63, 357, 545, 782
Sau3AI GATC 5 cut(s) 759, 1005, 1083, 1110, 1176
Sau96I GGNCC 2 cut(s) 111, 742
ScaI AGTACT 1 cut(s) 1130
SchI GAGTC 4 cut(s) 37, 61, 211, 1267
ScrFI CCNGG 4 cut(s) 371, 411, 1155, 1335
SduI GDGCHC 2 cut(s) 1170, 1370
SfaNI GCATC 3 cut(s) 172, 682, 1297
SinI GGWCC 1 cut(s) 111
SmiMI CAYNNNNRTG 1 cut(s) 902
SmlI CTYRAG 3 cut(s) 443, 566, 1465
SmoI CTYRAG 3 cut(s) 443, 566, 1465
SphI GCATGC 1 cut(s) 650
Sse9I AATT 5 cut(s) 353, 851, 1311, 1401, 1443
SseBI AGGCCT 1 cut(s) 1191
SsiI CCGC 3 cut(s) 725, 998, 1507
SspMI CTAG 3 cut(s) 135, 272, 434
StuI AGGCCT 1 cut(s) 1191
StyD4I CCNGG 4 cut(s) 369, 409, 1153, 1333
StyI CCWWGG 1 cut(s) 115
TaaI ACNGT 6 cut(s) 59, 291, 877, 981, 1343, 1488
TaqII GACCGA 1 cut(s) 847
TasI AATT 5 cut(s) 353, 851, 1311, 1401, 1443
TatI WGTACW 2 cut(s) 439, 1128
TauI GCSGC 2 cut(s) 728, 1001
TfiI GAWTC 4 cut(s) 340, 379, 398, 925
Tru1I TTAA 4 cut(s) 63, 357, 545, 782
Tru9I TTAA 4 cut(s) 63, 357, 545, 782
TscAI CASTG 5 cut(s) 62, 95, 230, 1175, 1368
TseFI GTSAC 3 cut(s) 120, 281, 1482
TseI GCWGC 8 cut(s) 97, 365, 503, 748, 751, 754, 907, 1037
Tsp45I GTSAC 3 cut(s) 120, 281, 1482
TspDTI ATGAA 9 cut(s) 324, 716, 768, 853, 870, 1004, 1037, 1342, 1467
TspGWI ACGGA 1 cut(s) 892
TspRI CASTG 5 cut(s) 62, 95, 230, 1175, 1368
VpaK11BI GGWCC 1 cut(s) 111
VspI ATTAAT 1 cut(s) 782
XagI CCTNNNNNAGG 1 cut(s) 414
XapI RAATTY 3 cut(s) 353, 1311, 1443
XbaI TCTAGA 1 cut(s) 134
XceI RCATGY 3 cut(s) 427, 650, 830
XmnI GAANNNNTTC 1 cut(s) 1218
XspI CTAG 3 cut(s) 135, 272, 434
ZrmI AGTACT 1 cut(s) 1130
Zsp2I ATGCAT 1 cut(s) 697
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.