Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004933

Physical Location & Seq

Genomic Coordinates Forward (+)

32548628 .. 32551337

Gene Structure 2710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G348900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGTCATTCTTGAAGCATGTTTGGGGTGATGTTGAGAGACAATTTTGTGCTTCAATATCACATAGTGGTTTAACTTTTCCAGGGCTCCTTACAGTACACCAGAGCCAAAGATTGATCCGCTCTATTGTAACAAGCATGGCAGTAGTCTTCAGTTACACAGCCTGCAGACAGCTGTCACAGATGTTCGCGGCGATAATCTTTTTTCACGGTTCTGAATACATTTTAGCAGTTGGCATTCACGGGAAATCAAATGTCACTCTGAAATCTCTTCTGATCAGCAAAAACTATCTGGTTGCAATGATTTTTTCCTTGCTGGAGTACTTAATAGAATATATTTTGTTCCCTGGTATGAAGGAACACTGGTGGGTCAGCAACTGGGGCCTTGGAATGCTTATAATAGGGGAAATCATTCGGAAGATGGCAATAATTACAGCTGGTCGGTCCTTCACACATCTCATCAGGGTTCATCACTCAGAGCATCACCAATTGATTACAAATGGAATTTATAGAGTTGTTCGGCATCCTGGTTACTGTGGTTTCTTCATATGGTCAGTGGGCACTCAGATAATGCTTTGTAATCCCATATCAACAATTGCATTTGCACTTGTAGTTTGGCGCTTCTTTGCGCAAAGAATACCGTATGAAGAGTATTTCTTGAGGCAGTTTTTTGGGTCGCAGTACGAGGAATATGCCAGACGAGTTCCTGCCGGGGTGCCTTTTATAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003880 GO:0004671 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006479 GO:0006481 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008213 GO:0008276 GO:0008757 GO:0009787 GO:0009788 GO:0009791 GO:0009908 GO:0009966 GO:0009968 GO:0009987 GO:0010340 GO:0010646 GO:0010648 GO:0012505 GO:0016740 GO:0016741 GO:0018410 GO:0019538 GO:0022414 GO:0023051 GO:0023057 GO:0032259 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048367 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051998 GO:0061458 GO:0065007 GO:0071704 GO:0090567 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

ICMT

Protein Analysis

243

Amino Acids

27.92

Weight (kDa)

9.56

Isoelectric Point (pI)

32.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004933)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08335 AT5G08335 AT5G23320 AT5G23320
malus_domestica	MD11G1238800.v1.1 MD13G1003500.v1.1 MD16G1003900.v1.1
prunus_persica	Prupe.1G348900_v2.0.a1 Prupe.1G348900_v2.0.a1
pyrus_communis	pycom13g00300 pycom16g00210
rosa_chinensis	RchiOBHm_Chr1g0318061 RchiOBHm_Chr1g0318091 RchiOBHm_Chr1g0318101 RchiOBHm_Chr4g0446911
rosa_laevigata	RLG00000005622 RLG00000030561 RLG00000030567
rosa_multiflora	Rmu_sc0001753.1_g000011 Rmu_sc0011424.1_g000010 Rmu_sc0011539.1_g000006
rosa_roxburghii	Rroxscaffold_4G00329550 Rroxscaffold_4G00329600
rosa_rugosa	Rorug04G0375900
rosa_samantha	Rh4AG437100 Rh4BG446300 Rh4CG463600 Rh4DG444900
rosa_wichuraiana	Rw1G002410 Rw4G037400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	395, 722
Acc16I	TGCGCA	1 cut(s)	627
AccB1I	GGYRCC	1 cut(s)	712
AccBSI	CCGCTC	1 cut(s)	120
AccII	CGCG	1 cut(s)	188
AciI	CCGC	2 cut(s)	118, 188
AclWI	GGATC	1 cut(s)	109
AcsI	RAATTY	1 cut(s)	501
AcuI	CTGAAG	1 cut(s)	133
AdeI	CACNNNGTG	1 cut(s)	65
AfaI	GTAC	3 cut(s)	96, 320, 680
AgsI	TTSAA	2 cut(s)	13, 54
AjnI	CCWGG	3 cut(s)	79, 343, 523
AluBI	AGCT	2 cut(s)	172, 434
AluI	AGCT	2 cut(s)	172, 434
Alw26I	GTCTC	1 cut(s)	31
AlwI	GGATC	1 cut(s)	109
AlwNI	CAGNNNCTG	1 cut(s)	375
AoxI	GGCC	1 cut(s)	379
ApoI	RAATTY	1 cut(s)	501
Asp700I	GAANNNNTTC	1 cut(s)	408
AspLEI	GCGC	2 cut(s)	618, 628
AspS9I	GGNCC	2 cut(s)	379, 441
AsuC2I	CCSGG	1 cut(s)	709
AsuHPI	GGTGA	2 cut(s)	38, 473
AvaII	GGWCC	1 cut(s)	441
BaeGI	GKGCMC	1 cut(s)	560
BanI	GGYRCC	1 cut(s)	712
BanII	GRGCYC	1 cut(s)	87
BbsI	GAAGAC	1 cut(s)	139
BccI	CCATC	1 cut(s)	412
BcgI	CGANNNNNNTGC	2 cut(s)	671, 705
BciT130I	CCWGG	3 cut(s)	81, 345, 525
BclI	TGATCA	1 cut(s)	273
BcnI	CCSGG	1 cut(s)	709
BcoDI	GTCTC	1 cut(s)	31
BfmI	CTRYAG	1 cut(s)	163
BfoI	RGCGCY	1 cut(s)	619
BisI	GCNGC	1 cut(s)	189
BlsI	GCNGC	1 cut(s)	190
BmcAI	AGTACT	1 cut(s)	320
Bme1390I	CCNGG	4 cut(s)	81, 345, 525, 709
Bme18I	GGWCC	1 cut(s)	441
BmgT120I	GGNCC	2 cut(s)	379, 441
BmiI	GGNNCC	3 cut(s)	86, 380, 714
BmrFI	CCNGG	4 cut(s)	81, 345, 525, 709
BmrI	ACTGGG	1 cut(s)	385
BmsI	GCATC	2 cut(s)	487, 529
BmuI	ACTGGG	1 cut(s)	385
BoxI	GACNNNNGTC	1 cut(s)	172
BpiI	GAAGAC	1 cut(s)	139
BpmI	CTGGAG	1 cut(s)	335
BpuEI	CTTGAG	1 cut(s)	676
BpuMI	CCSGG	1 cut(s)	709
BsaJI	CCNNGG	4 cut(s)	80, 343, 382, 708
Bse1I	ACTGG	2 cut(s)	365, 380
Bse3DI	GCAATG	1 cut(s)	303
BseBI	CCWGG	3 cut(s)	81, 345, 525
BseDI	CCNNGG	4 cut(s)	80, 343, 382, 708
BseGI	GGATG	1 cut(s)	520
BseMI	GCAATG	1 cut(s)	303
BseMII	CTCAG	2 cut(s)	486, 575
BseNI	ACTGG	2 cut(s)	365, 380
BseSI	GKGCMC	1 cut(s)	560
Bsh1236I	CGCG	1 cut(s)	188
BshFI	GGCC	1 cut(s)	381
BshNI	GGYRCC	1 cut(s)	712
BsiSI	CCGG	1 cut(s)	708
BsmAI	GTCTC	1 cut(s)	31
BsmI	GAATGC	2 cut(s)	234, 393
BsnI	GGCC	1 cut(s)	381
Bsp1286I	GDGCHC	2 cut(s)	87, 560
Bsp143I	GATC	2 cut(s)	114, 273
BspACI	CCGC	2 cut(s)	118, 188
BspANI	GGCC	1 cut(s)	381
BspCNI	CTCAG	2 cut(s)	485, 574
BspFNI	CGCG	1 cut(s)	188
BspLI	GGNNCC	3 cut(s)	86, 380, 714
BspMAI	CTGCAG	1 cut(s)	167
BspPI	GGATC	1 cut(s)	109
BspT107I	GGYRCC	1 cut(s)	712
BsrBI	CCGCTC	1 cut(s)	120
BsrDI	GCAATG	1 cut(s)	303
BsrI	ACTGG	2 cut(s)	365, 380
BssECI	CCNNGG	4 cut(s)	80, 343, 382, 708
BssMI	GATC	2 cut(s)	114, 273
BssT1I	CCWWGG	1 cut(s)	382
Bst2UI	CCWGG	3 cut(s)	81, 345, 525
Bst4CI	ACNGT	4 cut(s)	94, 209, 533, 639
Bst6I	CTCTTC	2 cut(s)	273, 639
BstC8I	GCNNGC	1 cut(s)	163
BstDEI	CTNAG	2 cut(s)	472, 561
BstF5I	GGATG	1 cut(s)	520
BstFNI	CGCG	1 cut(s)	188
BstH2I	RGCGCY	1 cut(s)	619
BstHHI	GCGC	2 cut(s)	618, 628
BstKTI	GATC	2 cut(s)	117, 276
BstMAI	GTCTC	1 cut(s)	31
BstMBI	GATC	2 cut(s)	114, 273
BstMWI	GCNNNNNNNGC	1 cut(s)	378
BstNI	CCWGG	3 cut(s)	81, 345, 525
BstNSI	RCATGY	1 cut(s)	20
BstPAI	GACNNNNGTC	1 cut(s)	172
BstSCI	CCNGG	4 cut(s)	79, 343, 523, 707
BstSFI	CTRYAG	1 cut(s)	163
BstSLI	GKGCMC	1 cut(s)	560
BstUI	CGCG	1 cut(s)	188
BstV2I	GAAGAC	1 cut(s)	139
BsuRI	GGCC	1 cut(s)	381
BtsCI	GGATG	1 cut(s)	520
BtsIMutI	CAGTG	2 cut(s)	358, 558
Cac8I	GCNNGC	1 cut(s)	163
CaiI	CAGNNNCTG	1 cut(s)	375
CfoI	GCGC	2 cut(s)	618, 628
Cfr13I	GGNCC	2 cut(s)	379, 441
Csp6I	GTAC	3 cut(s)	95, 319, 679
CviAII	CATG	2 cut(s)	17, 136
CviJI	RGCY	6 cut(s)	85, 105, 161, 172, 381, 434
CviKI_1	RGCY	6 cut(s)	85, 105, 161, 172, 381, 434
CviQI	GTAC	3 cut(s)	95, 319, 679
DdeI	CTNAG	2 cut(s)	472, 561
DpnI	GATC	2 cut(s)	116, 275
DpnII	GATC	2 cut(s)	114, 273
DraIII	CACNNNGTG	1 cut(s)	65
Eam1104I	CTCTTC	2 cut(s)	273, 639
EarI	CTCTTC	2 cut(s)	273, 639
Eco130I	CCWWGG	1 cut(s)	382
Eco24I	GRGCYC	1 cut(s)	87
Eco47I	GGWCC	1 cut(s)	441
Eco57I	CTGAAG	1 cut(s)	133
EcoO109I	RGGNCCY	1 cut(s)	379
EcoRII	CCWGG	3 cut(s)	79, 343, 523
EcoT14I	CCWWGG	1 cut(s)	382
EcoT38I	GRGCYC	1 cut(s)	87
ErhI	CCWWGG	1 cut(s)	382
FaeI	CATG	2 cut(s)	20, 139
FatI	CATG	2 cut(s)	16, 135
FauNDI	CATATG	1 cut(s)	545
FbaI	TGATCA	1 cut(s)	273
Fnu4HI	GCNGC	1 cut(s)	189
FokI	GGATG	1 cut(s)	507
FriOI	GRGCYC	1 cut(s)	87
Fsp4HI	GCNGC	1 cut(s)	189
FspI	TGCGCA	1 cut(s)	627
GlaI	GCGC	2 cut(s)	617, 627
GluI	GCNGC	1 cut(s)	189
GsuI	CTGGAG	1 cut(s)	335
HaeII	RGCGCY	1 cut(s)	619
HaeIII	GGCC	1 cut(s)	381
HapII	CCGG	1 cut(s)	708
HhaI	GCGC	2 cut(s)	618, 628
Hin1II	CATG	2 cut(s)	20, 139
Hin6I	GCGC	2 cut(s)	616, 626
HinP1I	GCGC	2 cut(s)	616, 626
HpaII	CCGG	1 cut(s)	708
HphI	GGTGA	2 cut(s)	38, 473
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	6 cut(s)	214, 261, 273, 414, 475, 564
Hpy188III	TCNNGA	2 cut(s)	10, 655
Hpy8I	GTNNAC	1 cut(s)	97
HpyAV	CCTTC	2 cut(s)	346, 454
HpyCH4III	ACNGT	4 cut(s)	94, 209, 533, 639
HpyCH4V	TGCA	4 cut(s)	165, 296, 596, 602
HpyF10VI	GCNNNNNNNGC	1 cut(s)	378
HpyF3I	CTNAG	2 cut(s)	472, 561
Hsp92II	CATG	2 cut(s)	20, 139
HspAI	GCGC	2 cut(s)	616, 626
Ksp22I	TGATCA	1 cut(s)	273
Kzo9I	GATC	2 cut(s)	114, 273
LmnI	GCTCC	1 cut(s)	90
LweI	GCATC	2 cut(s)	487, 529
MaeIII	GTNAC	5 cut(s)	127, 152, 174, 253, 527
MalI	GATC	2 cut(s)	116, 275
MbiI	CCGCTC	1 cut(s)	120
MboI	GATC	2 cut(s)	114, 273
MboII	GAAGA	5 cut(s)	139, 260, 427, 532, 656
MfeI	CAATTG	2 cut(s)	485, 591
MhlI	GDGCHC	2 cut(s)	87, 560
MluCI	AATT	5 cut(s)	41, 426, 485, 501, 591
MnlI	CCTC	2 cut(s)	651, 676
MroXI	GAANNNNTTC	1 cut(s)	408
MseI	TTAA	2 cut(s)	71, 323
MspA1I	CMGCKG	2 cut(s)	172, 434
MspI	CCGG	1 cut(s)	708
MspR9I	CCNGG	4 cut(s)	81, 345, 525, 709
MunI	CAATTG	2 cut(s)	485, 591
Mva1269I	GAATGC	2 cut(s)	234, 393
MvaI	CCWGG	3 cut(s)	81, 345, 525
MvnI	CGCG	1 cut(s)	188
MwoI	GCNNNNNNNGC	1 cut(s)	378
NciI	CCSGG	1 cut(s)	709
NdeI	CATATG	1 cut(s)	545
NdeII	GATC	2 cut(s)	114, 273
NlaIII	CATG	2 cut(s)	20, 139
NlaIV	GGNNCC	3 cut(s)	86, 380, 714
NmuCI	GTSAC	2 cut(s)	174, 253
NsbI	TGCGCA	1 cut(s)	627
NspI	RCATGY	1 cut(s)	20
PctI	GAATGC	2 cut(s)	234, 393
PdmI	GAANNNNTTC	1 cut(s)	408
PkrI	GCNGC	1 cut(s)	190
PshAI	GACNNNNGTC	1 cut(s)	172
PsiI	TTATAA	2 cut(s)	395, 722
Psp6I	CCWGG	3 cut(s)	79, 343, 523
PspGI	CCWGG	3 cut(s)	79, 343, 523
PspN4I	GGNNCC	3 cut(s)	86, 380, 714
PspPI	GGNCC	2 cut(s)	379, 441
PstI	CTGCAG	1 cut(s)	167
PstNI	CAGNNNCTG	1 cut(s)	375
PvuII	CAGCTG	2 cut(s)	172, 434
RsaI	GTAC	3 cut(s)	96, 320, 680
RsaNI	GTAC	3 cut(s)	95, 319, 679
SaqAI	TTAA	2 cut(s)	71, 323
SatI	GCNGC	1 cut(s)	189
Sau3AI	GATC	2 cut(s)	114, 273
Sau96I	GGNCC	2 cut(s)	379, 441
ScaI	AGTACT	1 cut(s)	320
ScrFI	CCNGG	4 cut(s)	81, 345, 525, 709
SduI	GDGCHC	2 cut(s)	87, 560
SetI	ASST	2 cut(s)	174, 436
SfaNI	GCATC	2 cut(s)	487, 529
SfcI	CTRYAG	1 cut(s)	163
SinI	GGWCC	1 cut(s)	441
SmlI	CTYRAG	1 cut(s)	655
SmoI	CTYRAG	1 cut(s)	655
Sse9I	AATT	5 cut(s)	41, 426, 485, 501, 591
SsiI	CCGC	2 cut(s)	118, 188
StyD4I	CCNGG	4 cut(s)	79, 343, 523, 707
StyI	CCWWGG	1 cut(s)	382
TaaI	ACNGT	4 cut(s)	94, 209, 533, 639
TaqII	GACCGA	1 cut(s)	429
TasI	AATT	5 cut(s)	41, 426, 485, 501, 591
TatI	WGTACW	2 cut(s)	94, 318
TauI	GCSGC	1 cut(s)	191
Tru1I	TTAA	2 cut(s)	71, 323
Tru9I	TTAA	2 cut(s)	71, 323
TscAI	CASTG	2 cut(s)	365, 558
TseFI	GTSAC	2 cut(s)	174, 253
Tsp45I	GTSAC	2 cut(s)	174, 253
TspDTI	ATGAA	4 cut(s)	365, 455, 532, 657
TspRI	CASTG	2 cut(s)	365, 558
VpaK11BI	GGWCC	1 cut(s)	441
XapI	RAATTY	1 cut(s)	501
XceI	RCATGY	1 cut(s)	20
XmnI	GAANNNNTTC	1 cut(s)	408
ZrmI	AGTACT	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.