Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0004933

Physical Location & Seq

Genomic Coordinates Forward (+)

72987817 .. 72988410

Gene Structure 594 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG437100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGAGCAAGTCTTCACTTACACAGCCTGCCGACAGTTGTCTCAGATGTTTGCGGCGATGATCTTTTTTCATGTTTCGGAATACATTTTAGCAGCCAGCATTCATGGGAAAACAAATGTTACTCTAAAATCTCTTCTGATCAGCAAAAACTACCTTGTTGCGATGATCTTTTCCTTGCTGGAGTACTTTATTGAAATCATTTTGTTCCCTGGTCTGAAGGAGCACTGGTGGGTCAGCAACTCAGGCCTTGCAATGGTTATAATAGGGGAAATCATTCGGAAGATGGCAATAATCACAGCTGGTCGCTCATTCACACATCTCATAAGGACTCGTCCCTCTGAGCATCACCAGTTGGTTACGAATGGAATTTATAGAGTTGTTCGTCATCCAGGTTACTGTGGTTTCTTCATCTGGTCAGTGGGCACTCAGATAATGCTTTGTAATCCCATATCAACAACTGCATTTGCACTCGTAGTTTGGCGCTTCTTTCAACAAAGAATTCCTTATGAAGAGTTCTACTTGAGGCAGTTTTTTGGGTCACAGTATGAGGAATATGTGAGGCGGGTTCCTTCTGGGGTGCCTTTTGTGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003880 GO:0004671 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006479 GO:0006481 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008213 GO:0008276 GO:0008757 GO:0009787 GO:0009788 GO:0009791 GO:0009908 GO:0009966 GO:0009968 GO:0009987 GO:0010340 GO:0010646 GO:0010648 GO:0012505 GO:0016740 GO:0016741 GO:0018410 GO:0019538 GO:0022414 GO:0023051 GO:0023057 GO:0032259 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048367 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051998 GO:0061458 GO:0065007 GO:0071704 GO:0090567 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

ICMT

Protein Analysis

197

Amino Acids

22.95

Weight (kDa)

9.37

Isoelectric Point (pI)

35.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEMT	PF04191	82 - 180	9.8e-11	Phospholipid methyltransferase
ICMT	PF04140	83 - 175	1.5e-29	Isoprenylcysteine carboxyl methyltransferase (ICMT) family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004933)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08335 AT5G08335 AT5G23320 AT5G23320
malus_domestica	MD11G1238800.v1.1 MD13G1003500.v1.1 MD16G1003900.v1.1
prunus_persica	Prupe.1G348900_v2.0.a1 Prupe.1G348900_v2.0.a1
pyrus_communis	pycom13g00300 pycom16g00210
rosa_chinensis	RchiOBHm_Chr1g0318061 RchiOBHm_Chr1g0318091 RchiOBHm_Chr1g0318101 RchiOBHm_Chr4g0446911
rosa_laevigata	RLG00000005622 RLG00000030561 RLG00000030567
rosa_multiflora	Rmu_sc0001753.1_g000011 Rmu_sc0011424.1_g000010 Rmu_sc0011539.1_g000006
rosa_roxburghii	Rroxscaffold_4G00329550 Rroxscaffold_4G00329600
rosa_rugosa	Rorug04G0375900
rosa_samantha	Rh4AG437100 Rh4BG446300 Rh4CG463600 Rh4DG444900
rosa_wichuraiana	Rw1G002410 Rw4G037400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	260
AccB1I	GGYRCC	1 cut(s)	577
AciI	CCGC	2 cut(s)	53, 562
AcsI	RAATTY	2 cut(s)	366, 498
AcuI	CTGAAG	1 cut(s)	236
AfaI	GTAC	1 cut(s)	185
AfiI	CCNNNNNNNGG	1 cut(s)	253
AgsI	TTSAA	2 cut(s)	194, 491
AjnI	CCWGG	2 cut(s)	208, 388
AluBI	AGCT	1 cut(s)	299
AluI	AGCT	1 cut(s)	299
Alw21I	GWGCWC	1 cut(s)	225
Alw26I	GTCTC	1 cut(s)	45
AoxI	GGCC	1 cut(s)	244
ApeKI	GCWGC	1 cut(s)	92
ApoI	RAATTY	2 cut(s)	366, 498
Asp700I	GAANNNNTTC	1 cut(s)	273
AspLEI	GCGC	1 cut(s)	483
AsuHPI	GGTGA	1 cut(s)	338
BaeGI	GKGCMC	1 cut(s)	425
BanI	GGYRCC	1 cut(s)	577
BbsI	GAAGAC	1 cut(s)	4
Bbv12I	GWGCWC	1 cut(s)	225
BbvI	GCAGC	1 cut(s)	104
BccI	CCATC	1 cut(s)	277
BciT130I	CCWGG	2 cut(s)	210, 390
BclI	TGATCA	1 cut(s)	138
BcoDI	GTCTC	1 cut(s)	45
BfoI	RGCGCY	1 cut(s)	484
BisI	GCNGC	2 cut(s)	54, 93
BlsI	GCNGC	2 cut(s)	55, 94
BmcAI	AGTACT	1 cut(s)	185
Bme1390I	CCNGG	2 cut(s)	210, 390
BmiI	GGNNCC	2 cut(s)	567, 579
BmrFI	CCNGG	2 cut(s)	210, 390
BmsI	GCATC	1 cut(s)	352
BoxI	GACNNNNGTC	1 cut(s)	37
BpiI	GAAGAC	1 cut(s)	4
BpmI	CTGGAG	1 cut(s)	200
BpuEI	CTTGAG	1 cut(s)	541
BsaJI	CCNNGG	1 cut(s)	208
BsaXI	ACNNNNNCTCC	2 cut(s)	212, 242
Bsc4I	CCNNNNNNNGG	1 cut(s)	253
Bse1I	ACTGG	2 cut(s)	230, 349
Bse3DI	GCAATG	1 cut(s)	258
BseBI	CCWGG	2 cut(s)	210, 390
BseDI	CCNNGG	1 cut(s)	208
BseGI	GGATG	1 cut(s)	385
BseLI	CCNNNNNNNGG	1 cut(s)	253
BseMI	GCAATG	1 cut(s)	258
BseMII	CTCAG	4 cut(s)	56, 255, 330, 440
BseNI	ACTGG	2 cut(s)	230, 349
BseSI	GKGCMC	1 cut(s)	425
BseXI	GCAGC	1 cut(s)	104
BshFI	GGCC	1 cut(s)	246
BshNI	GGYRCC	1 cut(s)	577
BsiHKAI	GWGCWC	1 cut(s)	225
BslFI	GGGAC	1 cut(s)	318
BslI	CCNNNNNNNGG	1 cut(s)	253
BsmAI	GTCTC	1 cut(s)	45
BsmFI	GGGAC	1 cut(s)	318
BsmI	GAATGC	1 cut(s)	99
BsnI	GGCC	1 cut(s)	246
Bsp1286I	GDGCHC	2 cut(s)	225, 425
Bsp143I	GATC	3 cut(s)	60, 138, 165
BspACI	CCGC	2 cut(s)	53, 562
BspANI	GGCC	1 cut(s)	246
BspCNI	CTCAG	4 cut(s)	55, 254, 331, 439
BspLI	GGNNCC	2 cut(s)	567, 579
BspT107I	GGYRCC	1 cut(s)	577
BsrDI	GCAATG	1 cut(s)	258
BsrI	ACTGG	2 cut(s)	230, 349
BssECI	CCNNGG	1 cut(s)	208
BssMI	GATC	3 cut(s)	60, 138, 165
Bst2UI	CCWGG	2 cut(s)	210, 390
Bst4CI	ACNGT	3 cut(s)	36, 398, 543
Bst6I	CTCTTC	2 cut(s)	138, 504
BstC8I	GCNNGC	2 cut(s)	28, 97
BstDEI	CTNAG	4 cut(s)	42, 241, 339, 426
BstF5I	GGATG	1 cut(s)	385
BstH2I	RGCGCY	1 cut(s)	484
BstHHI	GCGC	1 cut(s)	483
BstKTI	GATC	3 cut(s)	63, 141, 168
BstMAI	GTCTC	1 cut(s)	45
BstMBI	GATC	3 cut(s)	60, 138, 165
BstMWI	GCNNNNNNNGC	2 cut(s)	243, 586
BstNI	CCWGG	2 cut(s)	210, 390
BstPAI	GACNNNNGTC	1 cut(s)	37
BstSCI	CCNGG	2 cut(s)	208, 388
BstSLI	GKGCMC	1 cut(s)	425
BstV1I	GCAGC	1 cut(s)	104
BstV2I	GAAGAC	1 cut(s)	4
BsuRI	GGCC	1 cut(s)	246
BtgZI	GCGATG	2 cut(s)	71, 176
BtsCI	GGATG	1 cut(s)	385
BtsIMutI	CAGTG	2 cut(s)	223, 423
Cac8I	GCNNGC	2 cut(s)	28, 97
CfoI	GCGC	1 cut(s)	483
Csp6I	GTAC	1 cut(s)	184
CviAII	CATG	2 cut(s)	71, 104
CviJI	RGCY	4 cut(s)	26, 95, 246, 299
CviKI_1	RGCY	4 cut(s)	26, 95, 246, 299
CviQI	GTAC	1 cut(s)	184
DdeI	CTNAG	4 cut(s)	42, 241, 339, 426
DpnI	GATC	3 cut(s)	62, 140, 167
DpnII	GATC	3 cut(s)	60, 138, 165
Eam1104I	CTCTTC	2 cut(s)	138, 504
EarI	CTCTTC	2 cut(s)	138, 504
Eco147I	AGGCCT	1 cut(s)	246
Eco57I	CTGAAG	1 cut(s)	236
EcoRI	GAATTC	1 cut(s)	498
EcoRII	CCWGG	2 cut(s)	208, 388
FaeI	CATG	2 cut(s)	74, 107
FaiI	YATR	9 cut(s)	72, 105, 260, 323, 372, 449, 507, 546, 555
FalI	AAGNNNNNCTT	2 cut(s)	487, 519
FaqI	GGGAC	1 cut(s)	318
FatI	CATG	2 cut(s)	70, 103
FauI	CCCGC	1 cut(s)	555
FbaI	TGATCA	1 cut(s)	138
Fnu4HI	GCNGC	2 cut(s)	54, 93
FokI	GGATG	1 cut(s)	372
Fsp4HI	GCNGC	2 cut(s)	54, 93
GlaI	GCGC	1 cut(s)	482
GluI	GCNGC	2 cut(s)	54, 93
GsuI	CTGGAG	1 cut(s)	200
HaeII	RGCGCY	1 cut(s)	484
HaeIII	GGCC	1 cut(s)	246
HhaI	GCGC	1 cut(s)	483
Hin1II	CATG	2 cut(s)	74, 107
Hin6I	GCGC	1 cut(s)	481
HinP1I	GCGC	1 cut(s)	481
HinfI	GANTC	1 cut(s)	328
HphI	GGTGA	1 cut(s)	338
Hpy188I	TCNGA	7 cut(s)	45, 79, 138, 216, 279, 340, 429
HpyAV	CCTTC	2 cut(s)	211, 579
HpyCH4III	ACNGT	3 cut(s)	36, 398, 543
HpyCH4V	TGCA	4 cut(s)	251, 461, 467, 589
HpyF10VI	GCNNNNNNNGC	2 cut(s)	243, 586
HpyF3I	CTNAG	4 cut(s)	42, 241, 339, 426
Hsp92II	CATG	2 cut(s)	74, 107
HspAI	GCGC	1 cut(s)	481
Ksp22I	TGATCA	1 cut(s)	138
Kzo9I	GATC	3 cut(s)	60, 138, 165
LmnI	GCTCC	2 cut(s)	4, 220
Lsp1109I	GCAGC	1 cut(s)	104
LweI	GCATC	1 cut(s)	352
MaeIII	GTNAC	4 cut(s)	118, 355, 392, 537
MalI	GATC	3 cut(s)	62, 140, 167
MboI	GATC	3 cut(s)	60, 138, 165
MboII	GAAGA	5 cut(s)	4, 125, 292, 397, 521
MhlI	GDGCHC	2 cut(s)	225, 425
MluCI	AATT	2 cut(s)	366, 498
MlyI	GAGTC	1 cut(s)	322
MnlI	CCTC	4 cut(s)	346, 516, 541, 552
MroXI	GAANNNNTTC	1 cut(s)	273
MspA1I	CMGCKG	1 cut(s)	299
MspR9I	CCNGG	2 cut(s)	210, 390
Mva1269I	GAATGC	1 cut(s)	99
MvaI	CCWGG	2 cut(s)	210, 390
MwoI	GCNNNNNNNGC	2 cut(s)	243, 586
NdeII	GATC	3 cut(s)	60, 138, 165
NlaIII	CATG	2 cut(s)	74, 107
NlaIV	GGNNCC	2 cut(s)	567, 579
NmuCI	GTSAC	1 cut(s)	537
PceI	AGGCCT	1 cut(s)	246
PctI	GAATGC	1 cut(s)	99
PdmI	GAANNNNTTC	1 cut(s)	273
PkrI	GCNGC	2 cut(s)	55, 94
PleI	GAGTC	1 cut(s)	322
PpsI	GAGTC	1 cut(s)	322
PshAI	GACNNNNGTC	1 cut(s)	37
PsiI	TTATAA	1 cut(s)	260
Psp6I	CCWGG	2 cut(s)	208, 388
PspGI	CCWGG	2 cut(s)	208, 388
PspN4I	GGNNCC	2 cut(s)	567, 579
PvuII	CAGCTG	1 cut(s)	299
RsaI	GTAC	1 cut(s)	185
RsaNI	GTAC	1 cut(s)	184
SatI	GCNGC	2 cut(s)	54, 93
Sau3AI	GATC	3 cut(s)	60, 138, 165
ScaI	AGTACT	1 cut(s)	185
SchI	GAGTC	1 cut(s)	322
ScrFI	CCNGG	2 cut(s)	210, 390
SduI	GDGCHC	2 cut(s)	225, 425
SetI	ASST	3 cut(s)	156, 301, 394
SfaNI	GCATC	1 cut(s)	352
SmlI	CTYRAG	1 cut(s)	520
SmoI	CTYRAG	1 cut(s)	520
Sse9I	AATT	2 cut(s)	366, 498
SseBI	AGGCCT	1 cut(s)	246
SsiI	CCGC	2 cut(s)	53, 562
StuI	AGGCCT	1 cut(s)	246
StyD4I	CCNGG	2 cut(s)	208, 388
TaaI	ACNGT	3 cut(s)	36, 398, 543
TasI	AATT	2 cut(s)	366, 498
TatI	WGTACW	1 cut(s)	183
TauI	GCSGC	1 cut(s)	56
TscAI	CASTG	2 cut(s)	230, 423
TseFI	GTSAC	1 cut(s)	537
TseI	GCWGC	1 cut(s)	92
Tsp45I	GTSAC	1 cut(s)	537
TspDTI	ATGAA	4 cut(s)	59, 92, 397, 522
TspRI	CASTG	2 cut(s)	230, 423
XapI	RAATTY	2 cut(s)	366, 498
XmnI	GAANNNNTTC	1 cut(s)	273
ZrmI	AGTACT	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.