AT5G10890

Protein POLAR LOCALIZATION DURING ASYMMETRIC DIVISION AND

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0010398
Physical Location & Seq
Reverse (-)
3433742 .. 3435287
1546 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G10890.1

Sequence Viewer

Length: 888 bp
ATGGCGGAACCAAGGGTGAGAGACTCTGACACGGTGAGGATCAGAACTTCCTCGGAGGATGATCATCATAGAGTTGGCCAATTTTCAGATTCGCCGCCACCAACGATCCCTTCCGAATTGCAAAGAAGGGAATTTTTGTTCAGCATTGGCATGAGTTGTTATTTGATACATTTGATTGCTACTGGTAGACAAGAGATTCACAAGATCGTTGAGCTACGTAACGATTTAGACAAGTTTTTGGAATGTCGAAACGAAGAACTGAGGCAAAAACAGCAAGAGTTTGTCGAGTTACGTAACGATATACACAAGTTTTTAGAGTTTCACAACAATGAATTGAGGCGAAAACAGCTAGAGAAAACTGAAACCTCTGCGTATTCCGCCACAAGTGATGTTGTTGATGGCCCTGAATCGTCTACTGATCACTATTACTCTCCACAGATCATACAGACATCTATGAGTGTTGGAGGTGAAGGGTCGTTGTCACATTACGTATATAAGCTAGAGAATGATTCTGGAGGTGAGATGGATCAGCTTGAAGCTGAACTTGAAGCTGAGTTTGAGCTTCTTCAGATTGGTCATAACCAGGAGGTTAGTGAAGATGCAGAAGGATTAAGATTGGGACATGTGTGTCCAGGACTAGTGGAGGAACAACAAGGAGTGTGTCCGTATGAGCTGGAGAGAAGACTATACGAGCTCATGGAGACAAGACAACAAGAGGAGATAAAGGAGTTAGAGATTGCATTGGATGATGCTAAACAAAGACTTCATTTGAAAGAGACAGAAGCTTCTTGGTGGAAAGACACTGCTTATATAGTCTCTGAACGTATTCCAGAACCTTCTAGAATCACTCACAGCTCTCGAACTCATCCTTACCCTCTCTCAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008356 GO:0009987 GO:0044424 GO:0044464 GO:0051301 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

295

Amino Acids

34.28

Weight (kDa)

4.94

Isoelectric Point (pI)

67.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010398)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31805 AT5G10890 AT5G10890
fragaria_vesca FvH4_2g41090
malus_domestica MD08G1057500.v1.1 MD15G1039900.v1.1
prunus_persica Prupe.1G393300_v2.0.a1
pyrus_communis pycom08g04700 pycom15g03730 pycom15g03740
rosa_chinensis RchiOBHm_Chr6g0299451
rosa_laevigata RLG00000011430
rosa_multiflora Rmu_sc0017526.1_g000008 Rmu_sc0037301.1_g000003
rosa_roxburghii Rroxscaffold_7G00168670
rosa_rugosa Rorug06G0288400
rosa_samantha Rh6AG400200 Rh6BG408800 Rh6CG414300 Rh6DG401300
rosa_wichuraiana Rw6G035030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 627
AccI GTMKAC 2 cut(s) 187, 413
AciI CCGC 3 cut(s) 5, 95, 378
AclWI GGATC 3 cut(s) 47, 100, 534
AcoI YGGCCR 1 cut(s) 76
AcsI RAATTY 1 cut(s) 131
AcuI CTGAAG 1 cut(s) 551
AflIII ACRYGT 1 cut(s) 622
AgsI TTSAA 3 cut(s) 536, 548, 772
AhlI ACTAGT 1 cut(s) 637
AjnI CCWGG 2 cut(s) 582, 631
AjuI GAANNNNNNNTTGG 2 cut(s) 94, 126
AloI GAACNNNNNNTCC 2 cut(s) 122, 154
Alw21I GWGCWC 1 cut(s) 696
Alw26I GTCTC 4 cut(s) 15, 695, 770, 820
AlwI GGATC 3 cut(s) 47, 100, 534
AoxI GGCC 2 cut(s) 76, 400
ApoI RAATTY 1 cut(s) 131
Asp700I GAANNNNTTC 1 cut(s) 825
AspS9I GGNCC 1 cut(s) 401
AsuHPI GGTGA 4 cut(s) 28, 46, 479, 530
BalI TGGCCA 1 cut(s) 78
BanII GRGCYC 1 cut(s) 696
BbsI GAAGAC 1 cut(s) 688
Bbv12I GWGCWC 1 cut(s) 696
BccI CCATC 2 cut(s) 392, 517
BciT130I CCWGG 2 cut(s) 584, 633
BclI TGATCA 2 cut(s) 61, 418
BcoDI GTCTC 4 cut(s) 15, 695, 770, 820
BcuI ACTAGT 1 cut(s) 637
BfaI CTAG 4 cut(s) 350, 500, 638, 840
BisI GCNGC 1 cut(s) 95
BlsI GCNGC 1 cut(s) 96
Bme1390I CCNGG 2 cut(s) 584, 633
BmgT120I GGNCC 1 cut(s) 401
BmiI GGNNCC 1 cut(s) 9
BmrFI CCNGG 2 cut(s) 584, 633
BmsI GCATC 2 cut(s) 589, 739
BpiI GAAGAC 1 cut(s) 688
BpmI CTGGAG 2 cut(s) 534, 695
BpuEI CTTGAG 1 cut(s) 865
BsaAI YACGTR 3 cut(s) 218, 293, 490
BsaBI GATNNNNATC 1 cut(s) 63
BsaJI CCNNGG 2 cut(s) 11, 51
Bse1I ACTGG 1 cut(s) 187
Bse8I GATNNNNATC 1 cut(s) 63
BseBI CCWGG 2 cut(s) 584, 633
BseDI CCNNGG 2 cut(s) 11, 51
BseGI GGATG 3 cut(s) 64, 751, 865
BseJI GATNNNNATC 1 cut(s) 63
BseMII CTCAG 2 cut(s) 251, 543
BseNI ACTGG 1 cut(s) 187
BseRI GAGGAG 1 cut(s) 731
BshFI GGCC 2 cut(s) 78, 402
BsiHKAI GWGCWC 1 cut(s) 696
BslFI GGGAC 1 cut(s) 633
BsmAI GTCTC 4 cut(s) 15, 695, 770, 820
BsmFI GGGAC 1 cut(s) 633
BsnI GGCC 2 cut(s) 78, 402
Bsp1286I GDGCHC 1 cut(s) 696
Bsp143I GATC 7 cut(s) 39, 61, 105, 204, 418, 438, 526
BspACI CCGC 3 cut(s) 5, 95, 378
BspANI GGCC 2 cut(s) 78, 402
BspCNI CTCAG 2 cut(s) 252, 544
BspLI GGNNCC 1 cut(s) 9
BspPI GGATC 3 cut(s) 47, 100, 534
BsrI ACTGG 1 cut(s) 187
BssECI CCNNGG 2 cut(s) 11, 51
BssMI GATC 7 cut(s) 39, 61, 105, 204, 418, 438, 526
BssT1I CCWWGG 1 cut(s) 11
Bst2UI CCWGG 2 cut(s) 584, 633
Bst4CI ACNGT 1 cut(s) 34
BstBAI YACGTR 3 cut(s) 218, 293, 490
BstDEI CTNAG 2 cut(s) 260, 552
BstF5I GGATG 3 cut(s) 64, 751, 865
BstKTI GATC 7 cut(s) 42, 64, 108, 207, 421, 441, 529
BstMAI GTCTC 4 cut(s) 15, 695, 770, 820
BstMBI GATC 7 cut(s) 39, 61, 105, 204, 418, 438, 526
BstMWI GCNNNNNNNGC 3 cut(s) 271, 346, 377
BstNI CCWGG 2 cut(s) 584, 633
BstNSI RCATGY 1 cut(s) 626
BstSCI CCNGG 2 cut(s) 582, 631
BstSNI TACGTA 3 cut(s) 218, 293, 490
BstV2I GAAGAC 1 cut(s) 688
BsuRI GGCC 2 cut(s) 78, 402
BtsCI GGATG 3 cut(s) 64, 751, 865
BtsI GCAGTG 1 cut(s) 801
BtsIMutI CAGTG 1 cut(s) 801
Cfr13I GGNCC 1 cut(s) 401
CviAII CATG 3 cut(s) 151, 623, 697
DdeI CTNAG 2 cut(s) 260, 552
DpnI GATC 7 cut(s) 41, 63, 107, 206, 420, 440, 528
DpnII GATC 7 cut(s) 39, 61, 105, 204, 418, 438, 526
DrdI GACNNNNNNGTC 1 cut(s) 627
DseDI GACNNNNNNGTC 1 cut(s) 627
EaeI YGGCCR 1 cut(s) 76
EciI GGCGGA 2 cut(s) 20, 367
Ecl136II GAGCTC 1 cut(s) 694
Eco105I TACGTA 3 cut(s) 218, 293, 490
Eco130I CCWWGG 1 cut(s) 11
Eco24I GRGCYC 1 cut(s) 696
Eco53kI GAGCTC 1 cut(s) 694
Eco57I CTGAAG 1 cut(s) 551
EcoICRI GAGCTC 1 cut(s) 694
EcoRII CCWGG 2 cut(s) 582, 631
EcoT14I CCWWGG 1 cut(s) 11
EcoT38I GRGCYC 1 cut(s) 696
ErhI CCWWGG 1 cut(s) 11
FaeI CATG 3 cut(s) 154, 626, 700
FalI AAGNNNNNCTT 2 cut(s) 528, 560
FaqI GGGAC 1 cut(s) 633
FatI CATG 3 cut(s) 150, 622, 696
FbaI TGATCA 2 cut(s) 61, 418
FblI GTMKAC 2 cut(s) 187, 413
Fnu4HI GCNGC 1 cut(s) 95
FokI GGATG 3 cut(s) 71, 758, 852
FriOI GRGCYC 1 cut(s) 696
Fsp4HI GCNGC 1 cut(s) 95
FspBI CTAG 4 cut(s) 350, 500, 638, 840
GluI GCNGC 1 cut(s) 95
GsuI CTGGAG 2 cut(s) 534, 695
HaeIII GGCC 2 cut(s) 78, 402
Hin1II CATG 3 cut(s) 154, 626, 700
HindIII AAGCTT 1 cut(s) 783
HinfI GANTC 6 cut(s) 23, 89, 196, 407, 509, 843
HphI GGTGA 4 cut(s) 28, 46, 479, 530
Hpy166II GTNNAC 2 cut(s) 188, 414
Hpy188I TCNGA 7 cut(s) 28, 44, 55, 88, 115, 570, 820
Hpy188III TCNNGA 4 cut(s) 513, 830, 840, 858
Hpy8I GTNNAC 2 cut(s) 188, 414
HpyAV CCTTC 5 cut(s) 120, 120, 464, 599, 846
HpyCH4III ACNGT 1 cut(s) 34
HpyCH4IV ACGT 4 cut(s) 217, 292, 489, 823
HpyCH4V TGCA 3 cut(s) 121, 602, 740
HpyF10VI GCNNNNNNNGC 3 cut(s) 271, 346, 377
HpyF3I CTNAG 2 cut(s) 260, 552
HpySE526I ACGT 4 cut(s) 217, 292, 489, 823
Hsp92II CATG 3 cut(s) 154, 626, 700
Ksp22I TGATCA 2 cut(s) 61, 418
Kzo9I GATC 7 cut(s) 39, 61, 105, 204, 418, 438, 526
LpnPI CCDG 9 cut(s) 168, 417, 498, 569, 596, 618, 645, 659, 843
LweI GCATC 2 cut(s) 589, 739
MaeI CTAG 4 cut(s) 350, 500, 638, 840
MaeII ACGT 4 cut(s) 217, 292, 489, 823
MaeIII GTNAC 4 cut(s) 218, 288, 293, 480
MalI GATC 7 cut(s) 41, 63, 107, 206, 420, 440, 528
MboI GATC 7 cut(s) 39, 61, 105, 204, 418, 438, 526
MboII GAAGA 4 cut(s) 266, 557, 608, 693
MhlI GDGCHC 1 cut(s) 696
MlsI TGGCCA 1 cut(s) 78
MluCI AATT 4 cut(s) 80, 116, 131, 332
MluNI TGGCCA 1 cut(s) 78
MlyI GAGTC 1 cut(s) 17
MmeI TCCRAC 1 cut(s) 442
Mox20I TGGCCA 1 cut(s) 78
MroXI GAANNNNTTC 1 cut(s) 825
MscI TGGCCA 1 cut(s) 78
MseI TTAA 1 cut(s) 611
MslI CAYNNNNRTG 2 cut(s) 149, 327
Msp20I TGGCCA 1 cut(s) 78
MspR9I CCNGG 2 cut(s) 584, 633
MvaI CCWGG 2 cut(s) 584, 633
MwoI GCNNNNNNNGC 3 cut(s) 271, 346, 377
NdeII GATC 7 cut(s) 39, 61, 105, 204, 418, 438, 526
NlaIII CATG 3 cut(s) 154, 626, 700
NlaIV GGNNCC 1 cut(s) 9
NmuCI GTSAC 1 cut(s) 480
NspI RCATGY 1 cut(s) 626
PciI ACATGT 1 cut(s) 622
PdmI GAANNNNTTC 1 cut(s) 825
PfeI GAWTC 5 cut(s) 89, 196, 407, 509, 843
PfoI TCCNGGA 1 cut(s) 631
PkrI GCNGC 1 cut(s) 96
PleI GAGTC 1 cut(s) 17
PpsI GAGTC 1 cut(s) 17
Ppu21I YACGTR 3 cut(s) 218, 293, 490
PscI ACATGT 1 cut(s) 622
Psp124BI GAGCTC 1 cut(s) 696
Psp6I CCWGG 2 cut(s) 582, 631
PspGI CCWGG 2 cut(s) 582, 631
PspN4I GGNNCC 1 cut(s) 9
PspPI GGNCC 1 cut(s) 401
RseI CAYNNNNRTG 2 cut(s) 149, 327
SacI GAGCTC 1 cut(s) 696
SaqAI TTAA 1 cut(s) 611
SatI GCNGC 1 cut(s) 95
Sau3AI GATC 7 cut(s) 39, 61, 105, 204, 418, 438, 526
Sau96I GGNCC 1 cut(s) 401
SchI GAGTC 1 cut(s) 17
ScrFI CCNGG 2 cut(s) 584, 633
SduI GDGCHC 1 cut(s) 696
SfaNI GCATC 2 cut(s) 589, 739
SmiMI CAYNNNNRTG 2 cut(s) 149, 327
SmlI CTYRAG 1 cut(s) 880
SmoI CTYRAG 1 cut(s) 880
SnaBI TACGTA 3 cut(s) 218, 293, 490
SpeI ACTAGT 1 cut(s) 637
Sse9I AATT 4 cut(s) 80, 116, 131, 332
SsiI CCGC 3 cut(s) 5, 95, 378
SspMI CTAG 4 cut(s) 350, 500, 638, 840
SstI GAGCTC 1 cut(s) 696
StyD4I CCNGG 2 cut(s) 582, 631
StyI CCWWGG 1 cut(s) 11
TaaI ACNGT 1 cut(s) 34
TaiI ACGT 4 cut(s) 220, 295, 492, 826
TaqI TCGA 3 cut(s) 247, 285, 859
TasI AATT 4 cut(s) 80, 116, 131, 332
TauI GCSGC 1 cut(s) 97
TfiI GAWTC 5 cut(s) 89, 196, 407, 509, 843
Tru1I TTAA 1 cut(s) 611
Tru9I TTAA 1 cut(s) 611
TscAI CASTG 1 cut(s) 808
TseFI GTSAC 1 cut(s) 480
Tsp45I GTSAC 1 cut(s) 480
TspDTI ATGAA 2 cut(s) 345, 755
TspGWI ACGGA 1 cut(s) 654
TspRI CASTG 1 cut(s) 808
XapI RAATTY 1 cut(s) 131
XbaI TCTAGA 1 cut(s) 839
XceI RCATGY 1 cut(s) 626
XmiI GTMKAC 2 cut(s) 187, 413
XmnI GAANNNNTTC 1 cut(s) 825
XspI CTAG 4 cut(s) 350, 500, 638, 840
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.