Rw6G035030

Protein POLAR LOCALIZATION DURING ASYMMETRIC DIVISION AND

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0010398
Physical Location & Seq
Reverse (-)
59543016 .. 59544735
1720 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G035030.1

Sequence Viewer

Length: 1065 bp
ATGCAGAAGGAGGAGGAGGAGGAGGTTTCGTCCAAGTCCTTTAAAACCCACGAGACTCGCCGCATTCTCCGAATCGCTGATATTCTACTCGACGACAGAGACGGAGACTTGTTTGAAATGGACCGACCCCGAAAGACCGACCACCACCTCACCATTATACAGTGCTCCACGCCGCGCCGGATCGTCTCCCGATGGTTCTCCGCTCTCAAGCGTGCCAGACCCAGAAAAGTTAACGCACGGAGCGACAAAAGAGACAACGAAATCGTCAAAGAAAGCAGTCTCCCCCGCACCATGTGTTCCACAAATGGTTTCAACAGCGACGGAGGGCCAGGACGTTGTGGTATGGATTCGGGCTCGTTCAATTTGGGGGTGGCGTGTGGTCTGCTTTGTGTGGTTGCTGCTGGTAAAAATGAACTGAACAAGATGGTGGAATTGCGGACACAGATGGAGCTGATTCTTCAAAATGCCAAACAGGAAATGGGCAGTAAGAATGCACTTATAAACAACCCTAAGCCGGCGGCGGAGTCTAATGAGATTCATTTCGCTTCTTTCTCCACCAATTTCCAACAAGCATCGACCTCTGGTAGCCAGTTTTCTCTTCAATCTGTTGGCGGCCGCGACGAGTGCTCAGATTATTGTGTTGGAAATGAAGGAGAATACGTGGCAGGAATAGATCAACTAGAGGCAGAACTTCGAGCCGAATTAGAAAGAATGCAGCTCCAATTGGATTCAGAAAGTAATTCATCCATTTCAAAGTCCCCACAGCAGCAGAGGCTAGAGGGTATGGGAGACATTGGTTCAAACCGTCGTGAAGGGGACTCAGCATCAACGGATTACAGTGATCATGAAATGCTCTGGGGCTGTGGATTTGCTCCGCTTGAACTTGAGAGAAAATTGCATCTAGTGCTGGAAGCGAGACAAGAAGAGCGGATAAAAGAACTGGAAGATGCTTTAGAATGTGCAGAGCAGAAGCTTGAGGAGAAAGAAAGAGAGGTTTCTTGGTGGAGAAACGCTGCAATACTTATTTCAGGCCATGATCCAGAACCTTCATATTCGCATGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008356 GO:0009987 GO:0044424 GO:0044464 GO:0051301 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

354

Amino Acids

39.79

Weight (kDa)

5.16

Isoelectric Point (pI)

49.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010398)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31805 AT5G10890 AT5G10890
fragaria_vesca FvH4_2g41090
malus_domestica MD08G1057500.v1.1 MD15G1039900.v1.1
prunus_persica Prupe.1G393300_v2.0.a1
pyrus_communis pycom08g04700 pycom15g03730 pycom15g03740
rosa_chinensis RchiOBHm_Chr6g0299451
rosa_laevigata RLG00000011430
rosa_multiflora Rmu_sc0017526.1_g000008 Rmu_sc0037301.1_g000003
rosa_roxburghii Rroxscaffold_7G00168670
rosa_rugosa Rorug06G0288400
rosa_samantha Rh6AG400200 Rh6BG408800 Rh6CG414300 Rh6DG401300
rosa_wichuraiana Rw6G035030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 500
AccBSI CCGCTC 2 cut(s) 203, 928
AccII CGCG 2 cut(s) 175, 618
AclWI GGATC 2 cut(s) 188, 1031
AcoI YGGCCR 1 cut(s) 613
AdeI CACNNNGTG 1 cut(s) 294
AfiI CCNNNNNNNGG 1 cut(s) 514
AgsI TTSAA 8 cut(s) 116, 313, 361, 461, 602, 753, 801, 881
AjnI CCWGG 1 cut(s) 328
AluBI AGCT 3 cut(s) 451, 718, 973
AluI AGCT 3 cut(s) 451, 718, 973
Alw21I GWGCWC 2 cut(s) 167, 629
Alw26I GTCTC 8 cut(s) 47, 93, 99, 190, 246, 284, 783, 910
AlwI GGATC 2 cut(s) 188, 1031
AoxI GGCC 3 cut(s) 326, 613, 1030
ApeKI GCWGC 4 cut(s) 398, 715, 766, 1013
AspLEI GCGC 1 cut(s) 177
AspS9I GGNCC 2 cut(s) 121, 326
AsuHPI GGTGA 1 cut(s) 142
AvaII GGWCC 1 cut(s) 121
BanII GRGCYC 1 cut(s) 356
BauI CACGAG 1 cut(s) 50
Bbv12I GWGCWC 2 cut(s) 167, 629
BbvI GCAGC 4 cut(s) 385, 727, 778, 1000
BccI CCATC 3 cut(s) 186, 418, 439
BciT130I CCWGG 1 cut(s) 330
BclI TGATCA 1 cut(s) 841
BcoDI GTCTC 8 cut(s) 47, 93, 99, 190, 246, 284, 783, 910
BfaI CTAG 3 cut(s) 680, 776, 902
BisI GCNGC 9 cut(s) 61, 173, 399, 519, 613, 616, 716, 767, 1014
BlsI GCNGC 9 cut(s) 62, 174, 400, 520, 614, 617, 717, 768, 1015
Bme1390I CCNGG 1 cut(s) 330
Bme18I GGWCC 1 cut(s) 121
BmgT120I GGNCC 2 cut(s) 121, 326
BmrFI CCNGG 1 cut(s) 330
BmsI GCATC 4 cut(s) 581, 833, 907, 937
Bpu10I CCTNAGC 1 cut(s) 510
BpuEI CTTGAG 3 cut(s) 191, 905, 995
BsaAI YACGTR 1 cut(s) 661
BsaXI ACNNNNNCTCC 4 cut(s) 14, 44, 645, 675
Bsc4I CCNNNNNNNGG 1 cut(s) 514
Bse118I RCCGGY 1 cut(s) 514
Bse1I ACTGG 2 cut(s) 589, 945
BseBI CCWGG 1 cut(s) 330
BseGI GGATG 1 cut(s) 743
BseLI CCNNNNNNNGG 1 cut(s) 514
BseMII CTCAG 2 cut(s) 642, 834
BseNI ACTGG 2 cut(s) 589, 945
BseRI GAGGAG 5 cut(s) 26, 29, 32, 35, 992
BseX3I CGGCCG 1 cut(s) 613
BseXI GCAGC 4 cut(s) 385, 727, 778, 1000
BsgI GTGCAG 1 cut(s) 981
Bsh1236I CGCG 2 cut(s) 175, 618
Bsh1285I CGRYCG 1 cut(s) 616
BshFI GGCC 3 cut(s) 328, 615, 1032
BsiEI CGRYCG 1 cut(s) 616
BsiHKAI GWGCWC 2 cut(s) 167, 629
BsiSI CCGG 2 cut(s) 178, 515
BslFI GGGAC 2 cut(s) 742, 830
BslI CCNNNNNNNGG 1 cut(s) 514
BsmAI GTCTC 8 cut(s) 47, 93, 99, 190, 246, 284, 783, 910
BsmBI CGTCTC 2 cut(s) 93, 190
BsmFI GGGAC 2 cut(s) 742, 830
BsmI GAATGC 3 cut(s) 63, 496, 717
BsnI GGCC 3 cut(s) 328, 615, 1032
Bsp1286I GDGCHC 3 cut(s) 167, 356, 629
Bsp143I GATC 4 cut(s) 180, 673, 841, 1036
BspANI GGCC 3 cut(s) 328, 615, 1032
BspCNI CTCAG 2 cut(s) 641, 833
BspFNI CGCG 2 cut(s) 175, 618
BspHI TCATGA 1 cut(s) 844
BspPI GGATC 2 cut(s) 188, 1031
BspQI GCTCTTC 1 cut(s) 918
BsrBI CCGCTC 2 cut(s) 203, 928
BsrFI RCCGGY 1 cut(s) 514
BsrI ACTGG 2 cut(s) 589, 945
BssAI RCCGGY 1 cut(s) 514
BssMI GATC 4 cut(s) 180, 673, 841, 1036
BssSI CACGAG 1 cut(s) 50
Bst2BI CACGAG 1 cut(s) 50
Bst2UI CCWGG 1 cut(s) 330
Bst4CI ACNGT 3 cut(s) 162, 806, 839
Bst6I CTCTTC 2 cut(s) 603, 918
BstAPI GCANNNNNTGC 1 cut(s) 904
BstBAI YACGTR 1 cut(s) 661
BstC8I GCNNGC 2 cut(s) 213, 516
BstDEI CTNAG 3 cut(s) 510, 628, 820
BstF5I GGATG 1 cut(s) 743
BstFNI CGCG 2 cut(s) 175, 618
BstHHI GCGC 1 cut(s) 177
BstKTI GATC 4 cut(s) 183, 676, 844, 1039
BstMAI GTCTC 8 cut(s) 47, 93, 99, 190, 246, 284, 783, 910
BstMBI GATC 4 cut(s) 180, 673, 841, 1036
BstMCI CGRYCG 1 cut(s) 616
BstMWI GCNNNNNNNGC 3 cut(s) 624, 772, 904
BstNI CCWGG 1 cut(s) 330
BstSCI CCNGG 1 cut(s) 328
BstUI CGCG 2 cut(s) 175, 618
BstV1I GCAGC 4 cut(s) 385, 727, 778, 1000
BstZI CGGCCG 1 cut(s) 613
BsuRI GGCC 3 cut(s) 328, 615, 1032
BtsCI GGATG 1 cut(s) 743
BtsIMutI CAGTG 2 cut(s) 167, 844
Cac8I GCNNGC 2 cut(s) 213, 516
CciI TCATGA 1 cut(s) 844
CciNI GCGGCCGC 1 cut(s) 613
CfoI GCGC 1 cut(s) 177
Cfr10I RCCGGY 1 cut(s) 514
Cfr13I GGNCC 2 cut(s) 121, 326
CviAII CATG 4 cut(s) 292, 845, 1034, 1058
DdeI CTNAG 3 cut(s) 510, 628, 820
DpnI GATC 4 cut(s) 182, 675, 843, 1038
DpnII GATC 4 cut(s) 180, 673, 841, 1036
DraI TTTAAA 1 cut(s) 43
DraIII CACNNNGTG 1 cut(s) 294
EaeI YGGCCR 1 cut(s) 613
EagI CGGCCG 1 cut(s) 613
Eam1104I CTCTTC 2 cut(s) 603, 918
EarI CTCTTC 2 cut(s) 603, 918
EciI GGCGGA 1 cut(s) 536
EclXI CGGCCG 1 cut(s) 613
Eco24I GRGCYC 1 cut(s) 356
Eco47I GGWCC 1 cut(s) 121
Eco52I CGGCCG 1 cut(s) 613
EcoRII CCWGG 1 cut(s) 328
EcoT38I GRGCYC 1 cut(s) 356
Esp3I CGTCTC 2 cut(s) 93, 190
FaeI CATG 4 cut(s) 295, 848, 1037, 1061
FaiI YATR 9 cut(s) 158, 293, 344, 500, 785, 846, 1035, 1051, 1059
FaqI GGGAC 2 cut(s) 742, 830
FatI CATG 4 cut(s) 291, 844, 1033, 1057
FauI CCCGC 1 cut(s) 293
FbaI TGATCA 1 cut(s) 841
Fnu4HI GCNGC 9 cut(s) 61, 173, 399, 519, 613, 616, 716, 767, 1014
FokI GGATG 1 cut(s) 730
FriOI GRGCYC 1 cut(s) 356
Fsp4HI GCNGC 9 cut(s) 61, 173, 399, 519, 613, 616, 716, 767, 1014
FspBI CTAG 3 cut(s) 680, 776, 902
GlaI GCGC 1 cut(s) 176
GluI GCNGC 9 cut(s) 61, 173, 399, 519, 613, 616, 716, 767, 1014
HaeIII GGCC 3 cut(s) 328, 615, 1032
HapII CCGG 2 cut(s) 178, 515
HhaI GCGC 1 cut(s) 177
Hin1II CATG 4 cut(s) 295, 848, 1037, 1061
Hin6I GCGC 1 cut(s) 175
HinP1I GCGC 1 cut(s) 175
HincII GTYRAC 1 cut(s) 232
HindII GTYRAC 1 cut(s) 232
HindIII AAGCTT 1 cut(s) 971
HinfI GANTC 8 cut(s) 55, 72, 347, 454, 524, 535, 728, 818
HpaI GTTAAC 1 cut(s) 232
HpaII CCGG 2 cut(s) 178, 515
HphI GGTGA 1 cut(s) 142
Hpy166II GTNNAC 1 cut(s) 232
Hpy188I TCNGA 3 cut(s) 71, 631, 733
Hpy188III TCNNGA 4 cut(s) 189, 809, 845, 1040
Hpy8I GTNNAC 1 cut(s) 232
Hpy99I CGWCG 4 cut(s) 95, 323, 623, 810
HpyAV CCTTC 3 cut(s) 644, 806, 1056
HpyCH4III ACNGT 3 cut(s) 162, 806, 839
HpyCH4IV ACGT 2 cut(s) 334, 660
HpyCH4V TGCA 6 cut(s) 4, 494, 715, 898, 962, 1016
HpyF10VI GCNNNNNNNGC 3 cut(s) 624, 772, 904
HpyF3I CTNAG 3 cut(s) 510, 628, 820
HpySE526I ACGT 2 cut(s) 334, 660
Hsp92II CATG 4 cut(s) 295, 848, 1037, 1061
HspAI GCGC 1 cut(s) 175
KroI GCCGGC 1 cut(s) 514
KroNI GCCGGC 1 cut(s) 516
Ksp22I TGATCA 1 cut(s) 841
KspAI GTTAAC 1 cut(s) 232
Kzo9I GATC 4 cut(s) 180, 673, 841, 1036
LguI GCTCTTC 1 cut(s) 918
LmnI GCTCC 5 cut(s) 170, 240, 448, 723, 877
Lsp1109I GCAGC 4 cut(s) 385, 727, 778, 1000
LweI GCATC 4 cut(s) 581, 833, 907, 937
MaeI CTAG 3 cut(s) 680, 776, 902
MaeII ACGT 2 cut(s) 334, 660
MalI GATC 4 cut(s) 182, 675, 843, 1038
MbiI CCGCTC 2 cut(s) 203, 928
MboI GATC 4 cut(s) 180, 673, 841, 1036
MboII GAAGA 4 cut(s) 449, 590, 935, 956
MfeI CAATTG 1 cut(s) 722
MhlI GDGCHC 3 cut(s) 167, 356, 629
MluCI AATT 7 cut(s) 361, 431, 559, 701, 722, 739, 893
MlyI GAGTC 3 cut(s) 49, 533, 812
MmeI TCCRAC 2 cut(s) 589, 622
MroNI GCCGGC 1 cut(s) 514
MseI TTAA 2 cut(s) 42, 231
MspI CCGG 2 cut(s) 178, 515
MspR9I CCNGG 1 cut(s) 330
MunI CAATTG 1 cut(s) 722
Mva1269I GAATGC 3 cut(s) 63, 496, 717
MvaI CCWGG 1 cut(s) 330
MvnI CGCG 2 cut(s) 175, 618
MwoI GCNNNNNNNGC 3 cut(s) 624, 772, 904
NaeI GCCGGC 1 cut(s) 516
NdeII GATC 4 cut(s) 180, 673, 841, 1036
NgoMIV GCCGGC 1 cut(s) 514
NlaIII CATG 4 cut(s) 295, 848, 1037, 1061
NotI GCGGCCGC 1 cut(s) 613
PagI TCATGA 1 cut(s) 844
PciSI GCTCTTC 1 cut(s) 918
PcsI WCGNNNNNNNCGW 1 cut(s) 240
PctI GAATGC 3 cut(s) 63, 496, 717
PdiI GCCGGC 1 cut(s) 516
PfeI GAWTC 5 cut(s) 72, 347, 454, 535, 728
PkrI GCNGC 9 cut(s) 62, 174, 400, 520, 614, 617, 717, 768, 1015
PleI GAGTC 3 cut(s) 49, 532, 812
PpsI GAGTC 3 cut(s) 49, 532, 812
Ppu21I YACGTR 1 cut(s) 661
PsiI TTATAA 1 cut(s) 500
Psp6I CCWGG 1 cut(s) 328
PspGI CCWGG 1 cut(s) 328
PspPI GGNCC 2 cut(s) 121, 326
SapI GCTCTTC 1 cut(s) 918
SaqAI TTAA 2 cut(s) 42, 231
SatI GCNGC 9 cut(s) 61, 173, 399, 519, 613, 616, 716, 767, 1014
Sau3AI GATC 4 cut(s) 180, 673, 841, 1036
Sau96I GGNCC 2 cut(s) 121, 326
SchI GAGTC 3 cut(s) 49, 533, 812
ScrFI CCNGG 1 cut(s) 330
SduI GDGCHC 3 cut(s) 167, 356, 629
SfaNI GCATC 4 cut(s) 581, 833, 907, 937
SinI GGWCC 1 cut(s) 121
SmlI CTYRAG 3 cut(s) 206, 884, 974
SmoI CTYRAG 3 cut(s) 206, 884, 974
Sse9I AATT 7 cut(s) 361, 431, 559, 701, 722, 739, 893
SspMI CTAG 3 cut(s) 680, 776, 902
StyD4I CCNGG 1 cut(s) 328
TaaI ACNGT 3 cut(s) 162, 806, 839
TaiI ACGT 2 cut(s) 337, 663
TaqI TCGA 3 cut(s) 90, 575, 694
TaqII GACCGA 2 cut(s) 138, 152
TasI AATT 7 cut(s) 361, 431, 559, 701, 722, 739, 893
TauI GCSGC 5 cut(s) 63, 175, 521, 615, 618
TfiI GAWTC 5 cut(s) 72, 347, 454, 535, 728
Tru1I TTAA 2 cut(s) 42, 231
Tru9I TTAA 2 cut(s) 42, 231
TscAI CASTG 2 cut(s) 167, 844
TseI GCWGC 4 cut(s) 398, 715, 766, 1013
TspDTI ATGAA 6 cut(s) 426, 527, 663, 732, 861, 1038
TspGWI ACGGA 4 cut(s) 117, 253, 336, 845
TspRI CASTG 2 cut(s) 167, 844
VpaK11BI GGWCC 1 cut(s) 121
XcmI CCANNNNNNNNNTGG 1 cut(s) 475
XspI CTAG 3 cut(s) 680, 776, 902
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.