pycom15g03730

Protein POLAR LOCALIZATION DURING ASYMMETRIC DIVISION AND

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0010398
Physical Location & Seq
Forward (+)
2280360 .. 2280809
450 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g03730.1

Sequence Viewer

Length: 450 bp
ATGAGGAAGAAGAGGAAGGACGACCACTATCCCTTCTTTAAAACCCTAAACATTCTCCCCCCTTTCCGTTACTCCAGGACCCGCCACATTCGCATCGCCGACATTCTCGTTGATGAAGAATTGCGATCCGAAACCGACGGCTACGATTGCTCCGGAGACTTCAATATGGTTGGGCACCCACTCCACCTCCCCGAGGACGACGACGACGACGACAACGGATTCATGGCCTTACAGTGGTCCTCCCCGCGCCGTATCATTTCCCGATGGTTGTCGACTCTGAAGCGAGGCAAACGGAGGCGATGCGACGCCGTACGGAGCCAGAAGAGACCGAAAGAGGTTGCAACGACGGAGAGGGAGACTGGAGACGAGTCAACGCACGCCACCTGTTCGACGAATGGATTGAACGGCGGTGGCGAGGAAACAGAACCAAGTAAGCAAATCAGAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008356 GO:0009987 GO:0044424 GO:0044464 GO:0051301 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

17.28

Weight (kDa)

7.77

Isoelectric Point (pI)

82.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010398)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31805 AT5G10890 AT5G10890
fragaria_vesca FvH4_2g41090
malus_domestica MD08G1057500.v1.1 MD15G1039900.v1.1
prunus_persica Prupe.1G393300_v2.0.a1
pyrus_communis pycom08g04700 pycom15g03730 pycom15g03740
rosa_chinensis RchiOBHm_Chr6g0299451
rosa_laevigata RLG00000011430
rosa_multiflora Rmu_sc0017526.1_g000008 Rmu_sc0037301.1_g000003
rosa_roxburghii Rroxscaffold_7G00168670
rosa_rugosa Rorug06G0288400
rosa_samantha Rh6AG400200 Rh6BG408800 Rh6CG414300 Rh6DG401300
rosa_wichuraiana Rw6G035030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 174
AccI GTMKAC 1 cut(s) 272
AccII CGCG 1 cut(s) 247
AccIII TCCGGA 1 cut(s) 152
AciI CCGC 3 cut(s) 82, 245, 408
AclWI GGATC 1 cut(s) 120
AcsI RAATTY 1 cut(s) 444
AcuI CTGAAG 1 cut(s) 299
AcyI GRCGYC 1 cut(s) 306
AfaI GTAC 1 cut(s) 312
AfiI CCNNNNNNNGG 2 cut(s) 193, 234
AgsI TTSAA 2 cut(s) 163, 403
AjnI CCWGG 1 cut(s) 74
Alw26I GTCTC 4 cut(s) 150, 319, 350, 357
AlwI GGATC 1 cut(s) 120
Ama87I CYCGRG 1 cut(s) 191
Aor13HI TCCGGA 1 cut(s) 152
AoxI GGCC 1 cut(s) 225
ApoI RAATTY 1 cut(s) 444
AspLEI GCGC 1 cut(s) 249
AspS9I GGNCC 2 cut(s) 78, 237
AvaI CYCGRG 1 cut(s) 191
AvaII GGWCC 2 cut(s) 78, 237
BaeGI GKGCMC 1 cut(s) 177
BanI GGYRCC 1 cut(s) 174
BccI CCATC 1 cut(s) 258
BceAI ACGGC 4 cut(s) 154, 234, 293, 421
BciT130I CCWGG 1 cut(s) 76
BcoDI GTCTC 4 cut(s) 150, 319, 350, 357
Bme1390I CCNGG 1 cut(s) 76
Bme18I GGWCC 2 cut(s) 78, 237
BmeT110I CYCGRG 1 cut(s) 191
BmgT120I GGNCC 2 cut(s) 78, 237
BmiI GGNNCC 3 cut(s) 80, 176, 317
BmrFI CCNGG 1 cut(s) 76
BmsI GCATC 2 cut(s) 102, 290
BpmI CTGGAG 2 cut(s) 58, 381
BsaHI GRCGYC 1 cut(s) 306
BsaI GGTCTC 1 cut(s) 319
BsaJI CCNNGG 1 cut(s) 192
BsaWI WCCGGW 1 cut(s) 152
BsaXI ACNNNNNCTCC 4 cut(s) 134, 164, 171, 201
Bsc4I CCNNNNNNNGG 2 cut(s) 193, 234
Bse1I ACTGG 1 cut(s) 364
BseAI TCCGGA 1 cut(s) 152
BseBI CCWGG 1 cut(s) 76
BseDI CCNNGG 1 cut(s) 192
BseLI CCNNNNNNNGG 2 cut(s) 193, 234
BseNI ACTGG 1 cut(s) 364
BseSI GKGCMC 1 cut(s) 177
Bsh1236I CGCG 1 cut(s) 247
BshFI GGCC 1 cut(s) 227
BshNI GGYRCC 1 cut(s) 174
BsiHKCI CYCGRG 1 cut(s) 191
BsiSI CCGG 1 cut(s) 153
BsiWI CGTACG 1 cut(s) 310
BslI CCNNNNNNNGG 2 cut(s) 193, 234
BsmAI GTCTC 4 cut(s) 150, 319, 350, 357
BsmBI CGTCTC 1 cut(s) 357
BsnI GGCC 1 cut(s) 227
Bso31I GGTCTC 1 cut(s) 319
BsoBI CYCGRG 1 cut(s) 191
Bsp1286I GDGCHC 1 cut(s) 177
Bsp13I TCCGGA 1 cut(s) 152
Bsp143I GATC 1 cut(s) 125
BspACI CCGC 3 cut(s) 82, 245, 408
BspANI GGCC 1 cut(s) 227
BspEI TCCGGA 1 cut(s) 152
BspFNI CGCG 1 cut(s) 247
BspLI GGNNCC 3 cut(s) 80, 176, 317
BspPI GGATC 1 cut(s) 120
BspT107I GGYRCC 1 cut(s) 174
BspTNI GGTCTC 1 cut(s) 319
BsrI ACTGG 1 cut(s) 364
BssECI CCNNGG 1 cut(s) 192
BssMI GATC 1 cut(s) 125
BssNI GRCGYC 1 cut(s) 306
Bst2UI CCWGG 1 cut(s) 76
Bst4CI ACNGT 1 cut(s) 234
Bst6I CTCTTC 2 cut(s) 5, 317
BstACI GRCGYC 1 cut(s) 306
BstC8I GCNNGC 1 cut(s) 378
BstENI CCTNNNNNAGG 1 cut(s) 191
BstFNI CGCG 1 cut(s) 247
BstHHI GCGC 1 cut(s) 249
BstKTI GATC 1 cut(s) 128
BstMAI GTCTC 4 cut(s) 150, 319, 350, 357
BstMBI GATC 1 cut(s) 125
BstMWI GCNNNNNNNGC 2 cut(s) 90, 147
BstNI CCWGG 1 cut(s) 76
BstSCI CCNGG 1 cut(s) 74
BstSLI GKGCMC 1 cut(s) 177
BstUI CGCG 1 cut(s) 247
BsuRI GGCC 1 cut(s) 227
BtgZI GCGATG 2 cut(s) 79, 313
BtsIMutI CAGTG 1 cut(s) 239
Cac8I GCNNGC 1 cut(s) 378
CfoI GCGC 1 cut(s) 249
Cfr13I GGNCC 2 cut(s) 78, 237
CseI GACGC 1 cut(s) 314
Csp6I GTAC 1 cut(s) 311
CviAII CATG 1 cut(s) 223
CviJI RGCY 3 cut(s) 141, 227, 318
CviKI_1 RGCY 3 cut(s) 141, 227, 318
CviQI GTAC 1 cut(s) 311
DpnI GATC 1 cut(s) 127
DpnII GATC 1 cut(s) 125
DraI TTTAAA 1 cut(s) 40
Eam1104I CTCTTC 2 cut(s) 5, 317
EarI CTCTTC 2 cut(s) 5, 317
Eco31I GGTCTC 1 cut(s) 319
Eco47I GGWCC 2 cut(s) 78, 237
Eco57I CTGAAG 1 cut(s) 299
Eco88I CYCGRG 1 cut(s) 191
EcoNI CCTNNNNNAGG 1 cut(s) 191
EcoO109I RGGNCCY 1 cut(s) 78
EcoRII CCWGG 1 cut(s) 74
Esp3I CGTCTC 1 cut(s) 357
FaeI CATG 1 cut(s) 226
FaiI YATR 2 cut(s) 167, 224
FatI CATG 1 cut(s) 222
FauI CCCGC 2 cut(s) 89, 252
FblI GTMKAC 1 cut(s) 272
GlaI GCGC 1 cut(s) 248
GsuI CTGGAG 2 cut(s) 58, 381
HaeIII GGCC 1 cut(s) 227
HapII CCGG 1 cut(s) 153
HgaI GACGC 1 cut(s) 314
HhaI GCGC 1 cut(s) 249
Hin1I GRCGYC 1 cut(s) 306
Hin1II CATG 1 cut(s) 226
Hin6I GCGC 1 cut(s) 247
HinP1I GCGC 1 cut(s) 247
HincII GTYRAC 2 cut(s) 273, 372
HindII GTYRAC 2 cut(s) 273, 372
HinfI GANTC 3 cut(s) 219, 274, 368
HpaII CCGG 1 cut(s) 153
Hpy166II GTNNAC 2 cut(s) 273, 372
Hpy188I TCNGA 3 cut(s) 130, 279, 443
Hpy188III TCNNGA 2 cut(s) 153, 261
Hpy8I GTNNAC 2 cut(s) 273, 372
Hpy99I CGWCG 8 cut(s) 140, 203, 206, 209, 212, 308, 349, 394
HpyAV CCTTC 2 cut(s) 10, 43
HpyCH4III ACNGT 1 cut(s) 234
HpyCH4V TGCA 1 cut(s) 341
HpyF10VI GCNNNNNNNGC 2 cut(s) 90, 147
Hsp92I GRCGYC 1 cut(s) 306
Hsp92II CATG 1 cut(s) 226
HspAI GCGC 1 cut(s) 247
Kpn2I TCCGGA 1 cut(s) 152
Kzo9I GATC 1 cut(s) 125
LmnI GCTCC 2 cut(s) 155, 315
LpnPI CCDG 6 cut(s) 61, 88, 166, 332, 345, 397
LweI GCATC 2 cut(s) 102, 290
MaeIII GTNAC 1 cut(s) 68
MalI GATC 1 cut(s) 127
MboI GATC 1 cut(s) 125
MboII GAAGA 4 cut(s) 19, 22, 128, 334
MhlI GDGCHC 1 cut(s) 177
MluCI AATT 2 cut(s) 119, 444
MlyI GAGTC 2 cut(s) 268, 377
MnlI CCTC 9 cut(s) 6, 187, 197, 250, 278, 288, 328, 345, 409
MroI TCCGGA 1 cut(s) 152
MseI TTAA 1 cut(s) 39
MspI CCGG 1 cut(s) 153
MspR9I CCNGG 1 cut(s) 76
MvaI CCWGG 1 cut(s) 76
MvnI CGCG 1 cut(s) 247
MwoI GCNNNNNNNGC 2 cut(s) 90, 147
NdeII GATC 1 cut(s) 125
NlaIII CATG 1 cut(s) 226
NlaIV GGNNCC 3 cut(s) 80, 176, 317
PcsI WCGNNNNNNNCGW 3 cut(s) 204, 207, 411
PfeI GAWTC 1 cut(s) 219
Pfl23II CGTACG 1 cut(s) 310
PfoI TCCNGGA 1 cut(s) 74
PleI GAGTC 2 cut(s) 268, 376
PpsI GAGTC 2 cut(s) 268, 376
PpuMI RGGWCCY 1 cut(s) 78
Psp5II RGGWCCY 1 cut(s) 78
Psp6I CCWGG 1 cut(s) 74
PspGI CCWGG 1 cut(s) 74
PspLI CGTACG 1 cut(s) 310
PspN4I GGNNCC 3 cut(s) 80, 176, 317
PspPI GGNCC 2 cut(s) 78, 237
PspPPI RGGWCCY 1 cut(s) 78
RsaI GTAC 1 cut(s) 312
RsaNI GTAC 1 cut(s) 311
SalI GTCGAC 1 cut(s) 271
SaqAI TTAA 1 cut(s) 39
Sau3AI GATC 1 cut(s) 125
Sau96I GGNCC 2 cut(s) 78, 237
SchI GAGTC 2 cut(s) 268, 377
ScrFI CCNGG 1 cut(s) 76
SduI GDGCHC 1 cut(s) 177
SetI ASST 3 cut(s) 189, 339, 386
SfaNI GCATC 2 cut(s) 102, 290
SinI GGWCC 2 cut(s) 78, 237
Sse9I AATT 2 cut(s) 119, 444
SsiI CCGC 3 cut(s) 82, 245, 408
StyD4I CCNGG 1 cut(s) 74
TaaI ACNGT 1 cut(s) 234
TaqI TCGA 2 cut(s) 272, 389
TaqII GACCGA 1 cut(s) 343
TasI AATT 2 cut(s) 119, 444
TfiI GAWTC 1 cut(s) 219
Tru1I TTAA 1 cut(s) 39
Tru9I TTAA 1 cut(s) 39
TscAI CASTG 1 cut(s) 239
TspDTI ATGAA 2 cut(s) 129, 211
TspGWI ACGGA 5 cut(s) 56, 231, 307, 328, 362
TspRI CASTG 1 cut(s) 239
VpaK11BI GGWCC 2 cut(s) 78, 237
XagI CCTNNNNNAGG 1 cut(s) 191
XapI RAATTY 1 cut(s) 444
XmiI GTMKAC 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.