Rorug06G0288400

Protein POLAR LOCALIZATION DURING ASYMMETRIC DIVISION AND

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
43844476 .. 43844811
336 bp
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UTR
Exon/CDS
Intron
Rorug06G0288400.1

Sequence Viewer

Length: 336 bp
ATGGAGGAAGTGAAGGTAATAGGATTCTGGGCAAGTCCATATGTTTACAGGGTTACATGGGCTCTGAATCTCAAGGGAGTCAAATATGAATATCAAGAAGAGGACATATTCAACAAGAGTGGTTTGCTTCTTCAGTACAACCCGGTGCACAAGAAGGTTCCAGTGTTTGTTCATGGTGGAAAGCTGATTGCAGAGTCGAGTGTCATTCTGGAGTACATTGAAGAGACCTGGCCGCAGAACCCACTGCTTCCAACAGACCCTCATGCGAGGGCCATGGCTCGATTTTGGACAAAGTTTCGAGATGACAAGGTAATCGTGCCTGCCTTTTCTTCCTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.91

Weight (kDa)

6.83

Isoelectric Point (pI)

38.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GST_N PF02798 3 - 75 2.6e-18 Glutathione S-transferase, N-terminal domain
GST_N_3 PF13417 7 - 80 1.3e-15 Glutathione S-transferase, N-terminal domain
GST_N_2 PF13409 11 - 76 6e-15 Glutathione S-transferase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010398)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 233
AcoI YGGCCR 1 cut(s) 230
AcuI CTGAAG 1 cut(s) 116
AfaI GTAC 2 cut(s) 137, 215
AgsI TTSAA 2 cut(s) 112, 221
AjnI CCWGG 1 cut(s) 227
AluBI AGCT 1 cut(s) 184
AluI AGCT 1 cut(s) 184
Alw21I GWGCWC 1 cut(s) 150
Alw26I GTCTC 1 cut(s) 218
Alw44I GTGCAC 1 cut(s) 146
AoxI GGCC 2 cut(s) 230, 270
ApaLI GTGCAC 1 cut(s) 146
AspS9I GGNCC 1 cut(s) 270
AsuC2I CCSGG 1 cut(s) 143
BaeGI GKGCMC 1 cut(s) 150
BanII GRGCYC 1 cut(s) 64
Bbv12I GWGCWC 1 cut(s) 150
BciT130I CCWGG 1 cut(s) 229
BcnI CCSGG 1 cut(s) 143
BcoDI GTCTC 1 cut(s) 218
BfaI CTAG 1 cut(s) 334
BisI GCNGC 1 cut(s) 233
BlsI GCNGC 1 cut(s) 234
Bme1390I CCNGG 2 cut(s) 143, 229
BmgT120I GGNCC 1 cut(s) 270
BmiI GGNNCC 1 cut(s) 159
BmrFI CCNGG 2 cut(s) 143, 229
BpmI CTGGAG 1 cut(s) 230
BpuEI CTTGAG 1 cut(s) 56
BpuMI CCSGG 1 cut(s) 143
BsaI GGTCTC 1 cut(s) 218
BsaJI CCNNGG 1 cut(s) 273
Bse1I ACTGG 1 cut(s) 161
BseBI CCWGG 1 cut(s) 229
BseDI CCNNGG 1 cut(s) 273
BseNI ACTGG 1 cut(s) 161
BseSI GKGCMC 1 cut(s) 150
BshFI GGCC 2 cut(s) 232, 272
BsiHKAI GWGCWC 1 cut(s) 150
BsiSI CCGG 1 cut(s) 143
BsmAI GTCTC 1 cut(s) 218
BsnI GGCC 2 cut(s) 232, 272
Bso31I GGTCTC 1 cut(s) 218
Bsp1286I GDGCHC 2 cut(s) 64, 150
Bsp19I CCATGG 1 cut(s) 273
BspACI CCGC 1 cut(s) 233
BspANI GGCC 2 cut(s) 232, 272
BspLI GGNNCC 1 cut(s) 159
BspTNI GGTCTC 1 cut(s) 218
BsrI ACTGG 1 cut(s) 161
BssECI CCNNGG 1 cut(s) 273
BssT1I CCWWGG 1 cut(s) 273
Bst2UI CCWGG 1 cut(s) 229
Bst6I CTCTTC 2 cut(s) 93, 216
BstC8I GCNNGC 1 cut(s) 321
BstDSI CCRYGG 1 cut(s) 273
BstMAI GTCTC 1 cut(s) 218
BstNI CCWGG 1 cut(s) 229
BstSCI CCNGG 2 cut(s) 141, 227
BstSLI GKGCMC 1 cut(s) 150
BsuRI GGCC 2 cut(s) 232, 272
BtgI CCRYGG 1 cut(s) 273
BtsI GCAGTG 1 cut(s) 242
BtsIMutI CAGTG 2 cut(s) 168, 242
Cac8I GCNNGC 1 cut(s) 321
Cfr13I GGNCC 1 cut(s) 270
Csp6I GTAC 2 cut(s) 136, 214
CspCI CAANNNNNGTGG 2 cut(s) 100, 135
CviAII CATG 4 cut(s) 57, 173, 263, 274
CviJI RGCY 5 cut(s) 62, 184, 232, 272, 278
CviKI_1 RGCY 5 cut(s) 62, 184, 232, 272, 278
CviQI GTAC 2 cut(s) 136, 214
EaeI YGGCCR 1 cut(s) 230
Eam1104I CTCTTC 2 cut(s) 93, 216
EarI CTCTTC 2 cut(s) 93, 216
Eco130I CCWWGG 1 cut(s) 273
Eco24I GRGCYC 1 cut(s) 64
Eco31I GGTCTC 1 cut(s) 218
Eco57I CTGAAG 1 cut(s) 116
EcoRII CCWGG 1 cut(s) 227
EcoT14I CCWWGG 1 cut(s) 273
EcoT38I GRGCYC 1 cut(s) 64
ErhI CCWWGG 1 cut(s) 273
FaeI CATG 4 cut(s) 60, 176, 266, 277
FaiI YATR 8 cut(s) 40, 42, 58, 87, 107, 174, 264, 275
FatI CATG 4 cut(s) 56, 172, 262, 273
FauNDI CATATG 1 cut(s) 40
Fnu4HI GCNGC 1 cut(s) 233
FriOI GRGCYC 1 cut(s) 64
Fsp4HI GCNGC 1 cut(s) 233
FspBI CTAG 1 cut(s) 334
GluI GCNGC 1 cut(s) 233
GsuI CTGGAG 1 cut(s) 230
HaeIII GGCC 2 cut(s) 232, 272
HapII CCGG 1 cut(s) 143
Hin1II CATG 4 cut(s) 60, 176, 266, 277
HinfI GANTC 4 cut(s) 24, 67, 78, 194
HpaII CCGG 1 cut(s) 143
Hpy166II GTNNAC 2 cut(s) 46, 148
Hpy188I TCNGA 1 cut(s) 66
Hpy188III TCNNGA 3 cut(s) 95, 209, 299
Hpy8I GTNNAC 2 cut(s) 46, 148
HpyAV CCTTC 2 cut(s) 7, 148
HpyCH4V TGCA 2 cut(s) 148, 191
Hsp92II CATG 4 cut(s) 60, 176, 266, 277
LpnPI CCDG 7 cut(s) 13, 34, 156, 174, 194, 214, 241
MaeI CTAG 1 cut(s) 334
MaeIII GTNAC 1 cut(s) 52
MboII GAAGA 4 cut(s) 110, 122, 233, 321
MhlI GDGCHC 2 cut(s) 64, 150
MlyI GAGTC 2 cut(s) 87, 203
MmeI TCCRAC 1 cut(s) 275
MnlI CCTC 3 cut(s) 94, 261, 270
MspI CCGG 1 cut(s) 143
MspR9I CCNGG 2 cut(s) 143, 229
MvaI CCWGG 1 cut(s) 229
NciI CCSGG 1 cut(s) 143
NcoI CCATGG 1 cut(s) 273
NdeI CATATG 1 cut(s) 40
NlaIII CATG 4 cut(s) 60, 176, 266, 277
NlaIV GGNNCC 1 cut(s) 159
PfeI GAWTC 2 cut(s) 24, 67
PkrI GCNGC 1 cut(s) 234
PleI GAGTC 2 cut(s) 86, 202
PpsI GAGTC 2 cut(s) 86, 202
Psp6I CCWGG 1 cut(s) 227
PspGI CCWGG 1 cut(s) 227
PspN4I GGNNCC 1 cut(s) 159
PspPI GGNCC 1 cut(s) 270
RsaI GTAC 2 cut(s) 137, 215
RsaNI GTAC 2 cut(s) 136, 214
SatI GCNGC 1 cut(s) 233
Sau96I GGNCC 1 cut(s) 270
SchI GAGTC 2 cut(s) 87, 203
ScrFI CCNGG 2 cut(s) 143, 229
SduI GDGCHC 2 cut(s) 64, 150
SetI ASST 5 cut(s) 18, 159, 186, 230, 312
SmlI CTYRAG 1 cut(s) 71
SmoI CTYRAG 1 cut(s) 71
SsiI CCGC 1 cut(s) 233
SspMI CTAG 1 cut(s) 334
StyD4I CCNGG 2 cut(s) 141, 227
StyI CCWWGG 1 cut(s) 273
TaqI TCGA 3 cut(s) 197, 280, 298
TatI WGTACW 2 cut(s) 135, 213
TauI GCSGC 1 cut(s) 235
TfiI GAWTC 2 cut(s) 24, 67
TscAI CASTG 2 cut(s) 168, 249
TspDTI ATGAA 2 cut(s) 102, 161
TspRI CASTG 2 cut(s) 168, 249
VneI GTGCAC 1 cut(s) 146
XspI CTAG 1 cut(s) 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.