Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0010398

Physical Location & Seq

Genomic Coordinates Reverse (-)

59876703 .. 59877996

Gene Structure 1294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG414300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGCAGAAGAAGGAGGAGGAGGAGGAGGTTTCGTCCAAGTCCTTTAAAACCCACGAGACTCGCCGCATTCTCCGAATCGCTGATATTCTACTCGACGACAGAGACGGAGACGGAGACGGAGACGGAGACTTGTTTGAAATGGACCGACCCCGAAAGACCGACCACCACCTCACCATTATACAGTGCTCCACGCCGCGCCGGATCGTCTCCCGATGGTTCTCCGCTCTCAAGCGTGCCAGACCCAGAAAAGTGAACGCACGGAGCGACAAAAGAGACAACGAAATCGTCAAAGAAAGCAATCTCCCCCGCACCATGTGTTCCACAAATGGTTTCAACAGCGACGGAGGGCCAGGACGTTGTGGTATGGATTCGAGCTCGTTCAATTTGGGGGTGGCGTGTGGTCTGCTTTGTGTGGTTGCTGCTGGTAAAAATGAACTCAACAAGATGGTGGAATTGCGGACACAGATGGAGCTGATTCTTCAAAATGCCAAACAGGAAATGGGCAGTAAGAATGCACTTATAAACAACCCTAAGCCGGCGGCGGAGTCTAATGAGATTCATTTCGCTTCTTTCTCCACCAATTTCCAACAAGCATCGACCTCTGGTAGCCAGTTTTCTCTTCAATCTGTTGGCGGCCGAGACGAGTGCTCAGATTATTGTGTTGGAAATGAAGGAGAAGGAGGAGACGAATACGGGGCAGGAATAGATCAACTAGAGGCAGAGCTTCGAGCCGAATTAGAAAGAATGCAGCTCCAATTGGATTCAGAAAGTAATTCATCCATTTCAAAGTCCCCACAGCAGCAGAGGCTAGAGGGTATGGGAGACATTGGTTCAAACCGTCGTGAAGGGGACTCAGCATCAACGGATTACAGTGATCATGAAATGCTCTGGGGCTGTGGATTTGCTCCGCTTGAACTTGAGAGAAAATTGCATCTAGTGCTGGAAGCGAGACAAGAAGAGCGGATAAAAGAACTGGAAGATGCTTTAGAATGTGCAGAGCAGAAGCTTGAGGAGAAAGAAAGAGAGGTTTCTTGGTGGAGAAACGCTGCAATACTTATGTCAGGCCATGATCCAGAACCTTCATATTTGCATGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008356 GO:0009987 GO:0044424 GO:0044464 GO:0051301 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

365

Amino Acids

40.85

Weight (kDa)

4.99

Isoelectric Point (pI)

49.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010398)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31805 AT5G10890 AT5G10890
fragaria_vesca	FvH4_2g41090
malus_domestica	MD08G1057500.v1.1 MD15G1039900.v1.1
prunus_persica	Prupe.1G393300_v2.0.a1
pyrus_communis	pycom08g04700 pycom15g03730 pycom15g03740
rosa_chinensis	RchiOBHm_Chr6g0299451
rosa_laevigata	RLG00000011430
rosa_multiflora	Rmu_sc0017526.1_g000008 Rmu_sc0037301.1_g000003
rosa_roxburghii	Rroxscaffold_7G00168670
rosa_rugosa	Rorug06G0288400
rosa_samantha	Rh6AG400200 Rh6BG408800 Rh6CG414300 Rh6DG401300
rosa_wichuraiana	Rw6G035030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	521
AccBSI	CCGCTC	2 cut(s)	224, 961
AccII	CGCG	1 cut(s)	196
AclWI	GGATC	2 cut(s)	209, 1064
AcoI	YGGCCR	1 cut(s)	634
AdeI	CACNNNGTG	1 cut(s)	315
AfiI	CCNNNNNNNGG	1 cut(s)	535
AgsI	TTSAA	8 cut(s)	137, 334, 382, 482, 623, 786, 834, 914
AjnI	CCWGG	1 cut(s)	349
AluBI	AGCT	5 cut(s)	375, 472, 724, 751, 1006
AluI	AGCT	5 cut(s)	375, 472, 724, 751, 1006
Alw21I	GWGCWC	3 cut(s)	188, 377, 650
AlwI	GGATC	2 cut(s)	209, 1064
AoxI	GGCC	3 cut(s)	347, 634, 1063
ApeKI	GCWGC	4 cut(s)	419, 748, 799, 1046
AspLEI	GCGC	1 cut(s)	198
AspS9I	GGNCC	2 cut(s)	142, 347
AsuHPI	GGTGA	1 cut(s)	163
AvaII	GGWCC	1 cut(s)	142
BanII	GRGCYC	1 cut(s)	377
BauI	CACGAG	1 cut(s)	53
Bbv12I	GWGCWC	3 cut(s)	188, 377, 650
BbvI	GCAGC	4 cut(s)	406, 760, 811, 1033
BccI	CCATC	3 cut(s)	207, 439, 460
BcgI	CGANNNNNNTGC	2 cut(s)	627, 661
BciT130I	CCWGG	1 cut(s)	351
BclI	TGATCA	1 cut(s)	874
BfaI	CTAG	3 cut(s)	713, 809, 935
BisI	GCNGC	8 cut(s)	64, 194, 420, 540, 634, 749, 800, 1047
BlsI	GCNGC	8 cut(s)	65, 195, 421, 541, 635, 750, 801, 1048
Bme1390I	CCNGG	1 cut(s)	351
Bme18I	GGWCC	1 cut(s)	142
BmgT120I	GGNCC	2 cut(s)	142, 347
BmrFI	CCNGG	1 cut(s)	351
BmsI	GCATC	4 cut(s)	602, 866, 940, 970
Bpu10I	CCTNAGC	1 cut(s)	531
BpuEI	CTTGAG	3 cut(s)	212, 938, 1028
BsaXI	ACNNNNNCTCC	2 cut(s)	17, 47
Bsc4I	CCNNNNNNNGG	1 cut(s)	535
Bse118I	RCCGGY	1 cut(s)	535
Bse1I	ACTGG	2 cut(s)	610, 978
BseBI	CCWGG	1 cut(s)	351
BseGI	GGATG	1 cut(s)	776
BseLI	CCNNNNNNNGG	1 cut(s)	535
BseMII	CTCAG	2 cut(s)	663, 867
BseNI	ACTGG	2 cut(s)	610, 978
BseRI	GAGGAG	6 cut(s)	29, 32, 35, 38, 696, 1025
BseX3I	CGGCCG	1 cut(s)	634
BseXI	GCAGC	4 cut(s)	406, 760, 811, 1033
BsgI	GTGCAG	1 cut(s)	1014
Bsh1236I	CGCG	1 cut(s)	196
Bsh1285I	CGRYCG	1 cut(s)	637
BshFI	GGCC	3 cut(s)	349, 636, 1065
BsiEI	CGRYCG	1 cut(s)	637
BsiHKAI	GWGCWC	3 cut(s)	188, 377, 650
BsiSI	CCGG	2 cut(s)	199, 536
BslFI	GGGAC	2 cut(s)	775, 863
BslI	CCNNNNNNNGG	1 cut(s)	535
BsmBI	CGTCTC	7 cut(s)	96, 102, 108, 114, 211, 633, 678
BsmFI	GGGAC	2 cut(s)	775, 863
BsmI	GAATGC	3 cut(s)	66, 517, 750
BsnI	GGCC	3 cut(s)	349, 636, 1065
Bsp1286I	GDGCHC	3 cut(s)	188, 377, 650
Bsp143I	GATC	4 cut(s)	201, 706, 874, 1069
BspANI	GGCC	3 cut(s)	349, 636, 1065
BspCNI	CTCAG	2 cut(s)	662, 866
BspFNI	CGCG	1 cut(s)	196
BspHI	TCATGA	1 cut(s)	877
BspPI	GGATC	2 cut(s)	209, 1064
BspQI	GCTCTTC	1 cut(s)	951
BsrBI	CCGCTC	2 cut(s)	224, 961
BsrFI	RCCGGY	1 cut(s)	535
BsrI	ACTGG	2 cut(s)	610, 978
BssAI	RCCGGY	1 cut(s)	535
BssMI	GATC	4 cut(s)	201, 706, 874, 1069
BssSI	CACGAG	1 cut(s)	53
Bst2BI	CACGAG	1 cut(s)	53
Bst2UI	CCWGG	1 cut(s)	351
Bst4CI	ACNGT	3 cut(s)	183, 839, 872
Bst6I	CTCTTC	2 cut(s)	624, 951
BstAPI	GCANNNNNTGC	1 cut(s)	937
BstC8I	GCNNGC	2 cut(s)	234, 537
BstDEI	CTNAG	3 cut(s)	531, 649, 853
BstF5I	GGATG	1 cut(s)	776
BstFNI	CGCG	1 cut(s)	196
BstHHI	GCGC	1 cut(s)	198
BstKTI	GATC	4 cut(s)	204, 709, 877, 1072
BstMBI	GATC	4 cut(s)	201, 706, 874, 1069
BstMCI	CGRYCG	1 cut(s)	637
BstMWI	GCNNNNNNNGC	2 cut(s)	805, 937
BstNI	CCWGG	1 cut(s)	351
BstSCI	CCNGG	1 cut(s)	349
BstUI	CGCG	1 cut(s)	196
BstV1I	GCAGC	4 cut(s)	406, 760, 811, 1033
BstZI	CGGCCG	1 cut(s)	634
BsuRI	GGCC	3 cut(s)	349, 636, 1065
BtsCI	GGATG	1 cut(s)	776
BtsIMutI	CAGTG	2 cut(s)	188, 877
Cac8I	GCNNGC	2 cut(s)	234, 537
CciI	TCATGA	1 cut(s)	877
CfoI	GCGC	1 cut(s)	198
Cfr10I	RCCGGY	1 cut(s)	535
Cfr13I	GGNCC	2 cut(s)	142, 347
CviAII	CATG	4 cut(s)	313, 878, 1067, 1091
DdeI	CTNAG	3 cut(s)	531, 649, 853
DpnI	GATC	4 cut(s)	203, 708, 876, 1071
DpnII	GATC	4 cut(s)	201, 706, 874, 1069
DraI	TTTAAA	1 cut(s)	46
DraIII	CACNNNGTG	1 cut(s)	315
EaeI	YGGCCR	1 cut(s)	634
EagI	CGGCCG	1 cut(s)	634
Eam1104I	CTCTTC	2 cut(s)	624, 951
EarI	CTCTTC	2 cut(s)	624, 951
EciI	GGCGGA	1 cut(s)	557
Ecl136II	GAGCTC	1 cut(s)	375
EclXI	CGGCCG	1 cut(s)	634
Eco24I	GRGCYC	1 cut(s)	377
Eco47I	GGWCC	1 cut(s)	142
Eco52I	CGGCCG	1 cut(s)	634
Eco53kI	GAGCTC	1 cut(s)	375
EcoICRI	GAGCTC	1 cut(s)	375
EcoRII	CCWGG	1 cut(s)	349
EcoT38I	GRGCYC	1 cut(s)	377
Esp3I	CGTCTC	7 cut(s)	96, 102, 108, 114, 211, 633, 678
FaeI	CATG	4 cut(s)	316, 881, 1070, 1094
FaqI	GGGAC	2 cut(s)	775, 863
FatI	CATG	4 cut(s)	312, 877, 1066, 1090
FauI	CCCGC	1 cut(s)	314
FbaI	TGATCA	1 cut(s)	874
Fnu4HI	GCNGC	8 cut(s)	64, 194, 420, 540, 634, 749, 800, 1047
FokI	GGATG	1 cut(s)	763
FriOI	GRGCYC	1 cut(s)	377
Fsp4HI	GCNGC	8 cut(s)	64, 194, 420, 540, 634, 749, 800, 1047
FspBI	CTAG	3 cut(s)	713, 809, 935
GlaI	GCGC	1 cut(s)	197
GluI	GCNGC	8 cut(s)	64, 194, 420, 540, 634, 749, 800, 1047
HaeIII	GGCC	3 cut(s)	349, 636, 1065
HapII	CCGG	2 cut(s)	199, 536
HhaI	GCGC	1 cut(s)	198
Hin1II	CATG	4 cut(s)	316, 881, 1070, 1094
Hin6I	GCGC	1 cut(s)	196
HinP1I	GCGC	1 cut(s)	196
HindIII	AAGCTT	1 cut(s)	1004
HinfI	GANTC	8 cut(s)	58, 75, 368, 475, 545, 556, 761, 851
HpaII	CCGG	2 cut(s)	199, 536
HphI	GGTGA	1 cut(s)	163
Hpy166II	GTNNAC	1 cut(s)	253
Hpy188I	TCNGA	3 cut(s)	74, 652, 766
Hpy188III	TCNNGA	4 cut(s)	210, 842, 878, 1073
Hpy8I	GTNNAC	1 cut(s)	253
Hpy99I	CGWCG	3 cut(s)	98, 344, 843
HpyAV	CCTTC	5 cut(s)	4, 665, 671, 839, 1089
HpyCH4III	ACNGT	3 cut(s)	183, 839, 872
HpyCH4IV	ACGT	1 cut(s)	355
HpyCH4V	TGCA	7 cut(s)	4, 515, 748, 931, 995, 1049, 1090
HpyF10VI	GCNNNNNNNGC	2 cut(s)	805, 937
HpyF3I	CTNAG	3 cut(s)	531, 649, 853
HpySE526I	ACGT	1 cut(s)	355
Hsp92II	CATG	4 cut(s)	316, 881, 1070, 1094
HspAI	GCGC	1 cut(s)	196
KroI	GCCGGC	1 cut(s)	535
KroNI	GCCGGC	1 cut(s)	537
Ksp22I	TGATCA	1 cut(s)	874
Kzo9I	GATC	4 cut(s)	201, 706, 874, 1069
LguI	GCTCTTC	1 cut(s)	951
LmnI	GCTCC	5 cut(s)	191, 261, 469, 756, 910
Lsp1109I	GCAGC	4 cut(s)	406, 760, 811, 1033
LweI	GCATC	4 cut(s)	602, 866, 940, 970
MaeI	CTAG	3 cut(s)	713, 809, 935
MaeII	ACGT	1 cut(s)	355
MalI	GATC	4 cut(s)	203, 708, 876, 1071
MbiI	CCGCTC	2 cut(s)	224, 961
MboI	GATC	4 cut(s)	201, 706, 874, 1069
MboII	GAAGA	5 cut(s)	19, 470, 611, 968, 989
MfeI	CAATTG	1 cut(s)	755
MhlI	GDGCHC	3 cut(s)	188, 377, 650
MluCI	AATT	7 cut(s)	382, 452, 580, 734, 755, 772, 926
MlyI	GAGTC	3 cut(s)	52, 554, 845
MmeI	TCCRAC	2 cut(s)	610, 643
MroNI	GCCGGC	1 cut(s)	535
MseI	TTAA	1 cut(s)	45
MspI	CCGG	2 cut(s)	199, 536
MspR9I	CCNGG	1 cut(s)	351
MunI	CAATTG	1 cut(s)	755
Mva1269I	GAATGC	3 cut(s)	66, 517, 750
MvaI	CCWGG	1 cut(s)	351
MvnI	CGCG	1 cut(s)	196
MwoI	GCNNNNNNNGC	2 cut(s)	805, 937
NaeI	GCCGGC	1 cut(s)	537
NdeII	GATC	4 cut(s)	201, 706, 874, 1069
NgoMIV	GCCGGC	1 cut(s)	535
NlaIII	CATG	4 cut(s)	316, 881, 1070, 1094
NmeAIII	GCCGAG	1 cut(s)	662
PagI	TCATGA	1 cut(s)	877
PciSI	GCTCTTC	1 cut(s)	951
PcsI	WCGNNNNNNNCGW	1 cut(s)	261
PctI	GAATGC	3 cut(s)	66, 517, 750
PdiI	GCCGGC	1 cut(s)	537
PfeI	GAWTC	5 cut(s)	75, 368, 475, 556, 761
PkrI	GCNGC	8 cut(s)	65, 195, 421, 541, 635, 750, 801, 1048
PleI	GAGTC	3 cut(s)	52, 553, 845
PpsI	GAGTC	3 cut(s)	52, 553, 845
PsiI	TTATAA	1 cut(s)	521
Psp124BI	GAGCTC	1 cut(s)	377
Psp6I	CCWGG	1 cut(s)	349
PspGI	CCWGG	1 cut(s)	349
PspPI	GGNCC	2 cut(s)	142, 347
SacI	GAGCTC	1 cut(s)	377
SapI	GCTCTTC	1 cut(s)	951
SaqAI	TTAA	1 cut(s)	45
SatI	GCNGC	8 cut(s)	64, 194, 420, 540, 634, 749, 800, 1047
Sau3AI	GATC	4 cut(s)	201, 706, 874, 1069
Sau96I	GGNCC	2 cut(s)	142, 347
SchI	GAGTC	3 cut(s)	52, 554, 845
ScrFI	CCNGG	1 cut(s)	351
SduI	GDGCHC	3 cut(s)	188, 377, 650
SfaNI	GCATC	4 cut(s)	602, 866, 940, 970
SinI	GGWCC	1 cut(s)	142
SmlI	CTYRAG	3 cut(s)	227, 917, 1007
SmoI	CTYRAG	3 cut(s)	227, 917, 1007
Sse9I	AATT	7 cut(s)	382, 452, 580, 734, 755, 772, 926
SspMI	CTAG	3 cut(s)	713, 809, 935
SstI	GAGCTC	1 cut(s)	377
StyD4I	CCNGG	1 cut(s)	349
TaaI	ACNGT	3 cut(s)	183, 839, 872
TaiI	ACGT	1 cut(s)	358
TaqI	TCGA	4 cut(s)	93, 371, 596, 727
TaqII	GACCGA	2 cut(s)	159, 173
TasI	AATT	7 cut(s)	382, 452, 580, 734, 755, 772, 926
TauI	GCSGC	4 cut(s)	66, 196, 542, 636
TfiI	GAWTC	5 cut(s)	75, 368, 475, 556, 761
Tru1I	TTAA	1 cut(s)	45
Tru9I	TTAA	1 cut(s)	45
TscAI	CASTG	2 cut(s)	188, 877
TseI	GCWGC	4 cut(s)	419, 748, 799, 1046
TspDTI	ATGAA	6 cut(s)	447, 548, 684, 765, 894, 1071
TspGWI	ACGGA	7 cut(s)	120, 126, 132, 138, 274, 357, 878
TspRI	CASTG	2 cut(s)	188, 877
VpaK11BI	GGWCC	1 cut(s)	142
XcmI	CCANNNNNNNNNTGG	1 cut(s)	496
XspI	CTAG	3 cut(s)	713, 809, 935

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.