Rh6BG408800

Protein POLAR LOCALIZATION DURING ASYMMETRIC DIVISION AND

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0010398
Physical Location & Seq
Reverse (-)
63441239 .. 63442542
1304 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG408800.1

Sequence Viewer

Length: 1104 bp
ATGCAGAAGAAGGAGGAGGAGTCCTTTAAAACCCACGAGACTCGCCGCATTCTCCGAATCGCTGATATTCTACTCGACGACGGAGACGGAGACTTGTTTGAAATGGACCAACCCCGAAAGACCGACCACCACCTCACCATTATACAGTGCTCCACGCCGCGCCGGATCGTTTCCCGATGGTTCTCCGCTCTCAAGCGTGCCAGACACAGAAAAGTTAACGCACGGAGCGACAAAAGAGACAACGAAATCGTCAAAGAAAGCAATCTCCCCCACACCAGGTGTTCCACAAATGGTTTCAACAGCGACGGAGGGTCAGGACGTTGTGGTATGGATTCGAGCTCGTTCAATTTGGGGGTGGCGTGTGGTCTGCTTTGTGTGGTTGCTGCTGGTAAAAATGAACTCAACAAGATGGTGGAATTGCGGACACAGATGGAGCTGATTCTCCAAAATGCCAAACAGGAAACGGGCAGTAAGAATGCACTTACAAACAACCCTAAGCCGGCGGCGGAGTCTAATGAGATTAATTTCACTTCTTTCTCCACCAATTTCCAACAAGCATCGACCTCTGGTAGCCAGTTTTCTCTTCAATCTGTTGGCGGCCGCGACGAGTGCTCAGATTATTGTGTTGGAAATGAAGATGAAGGAGAAGGAGAAGGAGACGAATACGTGGCAGGAATAGATCTACTAGAGGCAGAGCTTCGAGCCGAATTAGAAAGAATGCAGCTCCAATTGGATTCAGAAAGTAATTCATCCATTTCAAAGTCCCCACAGCAGCAGAGGCTAGAGGGTATGGGAGACATTGGTTCAAACCGTCGTGAAGGGGACTCAGCATCAACGGATTACAGTGATCATGAAATGCTCTGGGGCTGTGGATTTGCTCCGCTTGAACTTGAGAGAAAATTGCATCTAGTGCTGGAAGCGAGACAAGAAGAGCGGATAAAAGAACTGGAAGATGCTTTAGAATGTGCAGAGCAGAAGCTTGAGGAGAAAGAAAGAGAGGTTTCTTGGTGGAGAAACGCTGCAATACTTATGTCAGGCCGTGATCCAGAACCTCATATTCGCATGGTTAGGAAACAACCAAATTGTACAGAGGGTGAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008356 GO:0009987 GO:0044424 GO:0044464 GO:0051301 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

367

Amino Acids

41.3

Weight (kDa)

5.02

Isoelectric Point (pI)

51.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010398)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31805 AT5G10890 AT5G10890
fragaria_vesca FvH4_2g41090
malus_domestica MD08G1057500.v1.1 MD15G1039900.v1.1
prunus_persica Prupe.1G393300_v2.0.a1
pyrus_communis pycom08g04700 pycom15g03730 pycom15g03740
rosa_chinensis RchiOBHm_Chr6g0299451
rosa_laevigata RLG00000011430
rosa_multiflora Rmu_sc0017526.1_g000008 Rmu_sc0037301.1_g000003
rosa_roxburghii Rroxscaffold_7G00168670
rosa_rugosa Rorug06G0288400
rosa_samantha Rh6AG400200 Rh6BG408800 Rh6CG414300 Rh6DG401300
rosa_wichuraiana Rw6G035030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 188, 934
AccII CGCG 2 cut(s) 160, 603
AclWI GGATC 2 cut(s) 173, 1037
AcoI YGGCCR 1 cut(s) 598
AdeI CACNNNGTG 1 cut(s) 279
AfaI GTAC 1 cut(s) 1087
AfiI CCNNNNNNNGG 2 cut(s) 276, 499
AgsI TTSAA 7 cut(s) 101, 298, 346, 587, 759, 807, 887
AhdI GACNNNNNGTC 1 cut(s) 310
AjnI CCWGG 1 cut(s) 275
AluBI AGCT 5 cut(s) 339, 436, 697, 724, 979
AluI AGCT 5 cut(s) 339, 436, 697, 724, 979
Alw21I GWGCWC 3 cut(s) 152, 341, 614
Alw26I GTCTC 7 cut(s) 32, 78, 84, 231, 651, 789, 916
AlwI GGATC 2 cut(s) 173, 1037
AoxI GGCC 2 cut(s) 598, 1036
ApeKI GCWGC 4 cut(s) 383, 721, 772, 1019
AseI ATTAAT 1 cut(s) 522
AspLEI GCGC 1 cut(s) 162
AspS9I GGNCC 1 cut(s) 106
AsuHPI GGTGA 1 cut(s) 127
AvaII GGWCC 1 cut(s) 106
BanII GRGCYC 1 cut(s) 341
BauI CACGAG 1 cut(s) 35
Bbv12I GWGCWC 3 cut(s) 152, 341, 614
BbvI GCAGC 4 cut(s) 370, 733, 784, 1006
BccI CCATC 3 cut(s) 171, 403, 424
BceAI ACGGC 1 cut(s) 1023
BciT130I CCWGG 1 cut(s) 277
BclI TGATCA 1 cut(s) 847
BcoDI GTCTC 7 cut(s) 32, 78, 84, 231, 651, 789, 916
BfaI CTAG 3 cut(s) 686, 782, 908
BglII AGATCT 1 cut(s) 679
BisI GCNGC 9 cut(s) 46, 158, 384, 504, 598, 601, 722, 773, 1020
BlsI GCNGC 9 cut(s) 47, 159, 385, 505, 599, 602, 723, 774, 1021
Bme1390I CCNGG 1 cut(s) 277
Bme18I GGWCC 1 cut(s) 106
BmeRI GACNNNNNGTC 1 cut(s) 310
BmgT120I GGNCC 1 cut(s) 106
BmrFI CCNGG 1 cut(s) 277
BmsI GCATC 4 cut(s) 566, 839, 913, 943
Bpu10I CCTNAGC 1 cut(s) 495
BpuEI CTTGAG 3 cut(s) 176, 911, 1001
BsaAI YACGTR 1 cut(s) 667
BsaXI ACNNNNNCTCC 2 cut(s) 5, 35
Bsc4I CCNNNNNNNGG 2 cut(s) 276, 499
Bse118I RCCGGY 1 cut(s) 499
Bse1I ACTGG 2 cut(s) 574, 951
BseBI CCWGG 1 cut(s) 277
BseGI GGATG 1 cut(s) 749
BseLI CCNNNNNNNGG 2 cut(s) 276, 499
BseMII CTCAG 2 cut(s) 627, 840
BseNI ACTGG 2 cut(s) 574, 951
BseRI GAGGAG 3 cut(s) 29, 32, 998
BseX3I CGGCCG 1 cut(s) 598
BseXI GCAGC 4 cut(s) 370, 733, 784, 1006
BsgI GTGCAG 1 cut(s) 987
Bsh1236I CGCG 2 cut(s) 160, 603
Bsh1285I CGRYCG 1 cut(s) 601
BshFI GGCC 2 cut(s) 600, 1038
BsiEI CGRYCG 1 cut(s) 601
BsiHKAI GWGCWC 3 cut(s) 152, 341, 614
BsiSI CCGG 2 cut(s) 163, 500
BslFI GGGAC 2 cut(s) 748, 836
BslI CCNNNNNNNGG 2 cut(s) 276, 499
BsmAI GTCTC 7 cut(s) 32, 78, 84, 231, 651, 789, 916
BsmBI CGTCTC 2 cut(s) 78, 651
BsmFI GGGAC 2 cut(s) 748, 836
BsmI GAATGC 3 cut(s) 48, 481, 723
BsnI GGCC 2 cut(s) 600, 1038
Bsp1286I GDGCHC 3 cut(s) 152, 341, 614
Bsp1407I TGTACA 1 cut(s) 1085
Bsp143I GATC 4 cut(s) 165, 679, 847, 1042
BspANI GGCC 2 cut(s) 600, 1038
BspCNI CTCAG 2 cut(s) 626, 839
BspFNI CGCG 2 cut(s) 160, 603
BspHI TCATGA 1 cut(s) 850
BspPI GGATC 2 cut(s) 173, 1037
BspQI GCTCTTC 1 cut(s) 924
BsrBI CCGCTC 2 cut(s) 188, 934
BsrFI RCCGGY 1 cut(s) 499
BsrGI TGTACA 1 cut(s) 1085
BsrI ACTGG 2 cut(s) 574, 951
BssAI RCCGGY 1 cut(s) 499
BssMI GATC 4 cut(s) 165, 679, 847, 1042
BssSI CACGAG 1 cut(s) 35
Bst2BI CACGAG 1 cut(s) 35
Bst2UI CCWGG 1 cut(s) 277
Bst4CI ACNGT 3 cut(s) 147, 812, 845
Bst6I CTCTTC 2 cut(s) 588, 924
BstAPI GCANNNNNTGC 1 cut(s) 910
BstAUI TGTACA 1 cut(s) 1085
BstBAI YACGTR 1 cut(s) 667
BstC8I GCNNGC 2 cut(s) 198, 501
BstDEI CTNAG 3 cut(s) 495, 613, 826
BstF5I GGATG 1 cut(s) 749
BstFNI CGCG 2 cut(s) 160, 603
BstHHI GCGC 1 cut(s) 162
BstKTI GATC 4 cut(s) 168, 682, 850, 1045
BstMAI GTCTC 7 cut(s) 32, 78, 84, 231, 651, 789, 916
BstMBI GATC 4 cut(s) 165, 679, 847, 1042
BstMCI CGRYCG 1 cut(s) 601
BstMWI GCNNNNNNNGC 3 cut(s) 609, 778, 910
BstNI CCWGG 1 cut(s) 277
BstSCI CCNGG 1 cut(s) 275
BstUI CGCG 2 cut(s) 160, 603
BstV1I GCAGC 4 cut(s) 370, 733, 784, 1006
BstX2I RGATCY 1 cut(s) 679
BstYI RGATCY 1 cut(s) 679
BstZI CGGCCG 1 cut(s) 598
BsuRI GGCC 2 cut(s) 600, 1038
BtsCI GGATG 1 cut(s) 749
BtsIMutI CAGTG 2 cut(s) 152, 850
Cac8I GCNNGC 2 cut(s) 198, 501
CciI TCATGA 1 cut(s) 850
CciNI GCGGCCGC 1 cut(s) 598
CfoI GCGC 1 cut(s) 162
Cfr10I RCCGGY 1 cut(s) 499
Cfr13I GGNCC 1 cut(s) 106
CsiI ACCWGGT 1 cut(s) 275
Csp6I GTAC 1 cut(s) 1086
CviAII CATG 2 cut(s) 851, 1063
CviQI GTAC 1 cut(s) 1086
DdeI CTNAG 3 cut(s) 495, 613, 826
DpnI GATC 4 cut(s) 167, 681, 849, 1044
DpnII GATC 4 cut(s) 165, 679, 847, 1042
DraI TTTAAA 1 cut(s) 28
DraIII CACNNNGTG 1 cut(s) 279
DriI GACNNNNNGTC 1 cut(s) 310
EaeI YGGCCR 1 cut(s) 598
EagI CGGCCG 1 cut(s) 598
Eam1104I CTCTTC 2 cut(s) 588, 924
Eam1105I GACNNNNNGTC 1 cut(s) 310
EarI CTCTTC 2 cut(s) 588, 924
EciI GGCGGA 1 cut(s) 521
Ecl136II GAGCTC 1 cut(s) 339
EclXI CGGCCG 1 cut(s) 598
Eco24I GRGCYC 1 cut(s) 341
Eco47I GGWCC 1 cut(s) 106
Eco52I CGGCCG 1 cut(s) 598
Eco53kI GAGCTC 1 cut(s) 339
EcoICRI GAGCTC 1 cut(s) 339
EcoRII CCWGG 1 cut(s) 275
EcoT38I GRGCYC 1 cut(s) 341
Esp3I CGTCTC 2 cut(s) 78, 651
FaeI CATG 2 cut(s) 854, 1066
FaiI YATR 7 cut(s) 143, 329, 791, 852, 1031, 1056, 1064
FaqI GGGAC 2 cut(s) 748, 836
FatI CATG 2 cut(s) 850, 1062
FbaI TGATCA 1 cut(s) 847
Fnu4HI GCNGC 9 cut(s) 46, 158, 384, 504, 598, 601, 722, 773, 1020
FokI GGATG 1 cut(s) 736
FriOI GRGCYC 1 cut(s) 341
Fsp4HI GCNGC 9 cut(s) 46, 158, 384, 504, 598, 601, 722, 773, 1020
FspBI CTAG 3 cut(s) 686, 782, 908
GlaI GCGC 1 cut(s) 161
GluI GCNGC 9 cut(s) 46, 158, 384, 504, 598, 601, 722, 773, 1020
HaeIII GGCC 2 cut(s) 600, 1038
HapII CCGG 2 cut(s) 163, 500
HhaI GCGC 1 cut(s) 162
Hin1II CATG 2 cut(s) 854, 1066
Hin6I GCGC 1 cut(s) 160
HinP1I GCGC 1 cut(s) 160
HincII GTYRAC 1 cut(s) 217
HindII GTYRAC 1 cut(s) 217
HindIII AAGCTT 1 cut(s) 977
HinfI GANTC 8 cut(s) 20, 40, 57, 332, 439, 509, 734, 824
HpaI GTTAAC 1 cut(s) 217
HpaII CCGG 2 cut(s) 163, 500
HphI GGTGA 1 cut(s) 127
Hpy166II GTNNAC 1 cut(s) 217
Hpy188I TCNGA 3 cut(s) 56, 616, 739
Hpy188III TCNNGA 5 cut(s) 174, 315, 815, 851, 1046
Hpy8I GTNNAC 1 cut(s) 217
Hpy99I CGWCG 5 cut(s) 80, 83, 308, 608, 816
HpyAV CCTTC 5 cut(s) 4, 635, 641, 647, 812
HpyCH4III ACNGT 3 cut(s) 147, 812, 845
HpyCH4IV ACGT 2 cut(s) 319, 666
HpyCH4V TGCA 6 cut(s) 4, 479, 721, 904, 968, 1022
HpyF10VI GCNNNNNNNGC 3 cut(s) 609, 778, 910
HpyF3I CTNAG 3 cut(s) 495, 613, 826
HpySE526I ACGT 2 cut(s) 319, 666
Hsp92II CATG 2 cut(s) 854, 1066
HspAI GCGC 1 cut(s) 160
KroI GCCGGC 1 cut(s) 499
KroNI GCCGGC 1 cut(s) 501
Ksp22I TGATCA 1 cut(s) 847
KspAI GTTAAC 1 cut(s) 217
Kzo9I GATC 4 cut(s) 165, 679, 847, 1042
LguI GCTCTTC 1 cut(s) 924
LmnI GCTCC 5 cut(s) 155, 225, 433, 729, 883
Lsp1109I GCAGC 4 cut(s) 370, 733, 784, 1006
LweI GCATC 4 cut(s) 566, 839, 913, 943
MabI ACCWGGT 1 cut(s) 275
MaeI CTAG 3 cut(s) 686, 782, 908
MaeII ACGT 2 cut(s) 319, 666
MalI GATC 4 cut(s) 167, 681, 849, 1044
MbiI CCGCTC 2 cut(s) 188, 934
MboI GATC 4 cut(s) 165, 679, 847, 1042
MboII GAAGA 5 cut(s) 19, 575, 647, 941, 962
MfeI CAATTG 1 cut(s) 728
MflI RGATCY 1 cut(s) 679
MhlI GDGCHC 3 cut(s) 152, 341, 614
MluCI AATT 9 cut(s) 346, 416, 523, 544, 707, 728, 745, 899, 1081
MlyI GAGTC 4 cut(s) 29, 34, 518, 818
MmeI TCCRAC 2 cut(s) 574, 607
MroNI GCCGGC 1 cut(s) 499
MseI TTAA 3 cut(s) 27, 216, 522
MspI CCGG 2 cut(s) 163, 500
MspR9I CCNGG 1 cut(s) 277
MunI CAATTG 1 cut(s) 728
Mva1269I GAATGC 3 cut(s) 48, 481, 723
MvaI CCWGG 1 cut(s) 277
MvnI CGCG 2 cut(s) 160, 603
MwoI GCNNNNNNNGC 3 cut(s) 609, 778, 910
NaeI GCCGGC 1 cut(s) 501
NdeII GATC 4 cut(s) 165, 679, 847, 1042
NgoMIV GCCGGC 1 cut(s) 499
NlaIII CATG 2 cut(s) 854, 1066
NotI GCGGCCGC 1 cut(s) 598
PagI TCATGA 1 cut(s) 850
PciSI GCTCTTC 1 cut(s) 924
PcsI WCGNNNNNNNCGW 1 cut(s) 225
PctI GAATGC 3 cut(s) 48, 481, 723
PdiI GCCGGC 1 cut(s) 501
PfeI GAWTC 4 cut(s) 57, 332, 439, 734
PkrI GCNGC 9 cut(s) 47, 159, 385, 505, 599, 602, 723, 774, 1021
PleI GAGTC 4 cut(s) 28, 34, 517, 818
PpsI GAGTC 4 cut(s) 28, 34, 517, 818
Ppu21I YACGTR 1 cut(s) 667
PshBI ATTAAT 1 cut(s) 522
Psp124BI GAGCTC 1 cut(s) 341
Psp6I CCWGG 1 cut(s) 275
PspGI CCWGG 1 cut(s) 275
PspPI GGNCC 1 cut(s) 106
PsuI RGATCY 1 cut(s) 679
RsaI GTAC 1 cut(s) 1087
RsaNI GTAC 1 cut(s) 1086
SacI GAGCTC 1 cut(s) 341
SapI GCTCTTC 1 cut(s) 924
SaqAI TTAA 3 cut(s) 27, 216, 522
SatI GCNGC 9 cut(s) 46, 158, 384, 504, 598, 601, 722, 773, 1020
Sau3AI GATC 4 cut(s) 165, 679, 847, 1042
Sau96I GGNCC 1 cut(s) 106
SchI GAGTC 4 cut(s) 29, 34, 518, 818
ScrFI CCNGG 1 cut(s) 277
SduI GDGCHC 3 cut(s) 152, 341, 614
SexAI ACCWGGT 1 cut(s) 275
SfaNI GCATC 4 cut(s) 566, 839, 913, 943
SinI GGWCC 1 cut(s) 106
SmlI CTYRAG 3 cut(s) 191, 890, 980
SmoI CTYRAG 3 cut(s) 191, 890, 980
Sse9I AATT 9 cut(s) 346, 416, 523, 544, 707, 728, 745, 899, 1081
SspMI CTAG 3 cut(s) 686, 782, 908
SstI GAGCTC 1 cut(s) 341
StyD4I CCNGG 1 cut(s) 275
TaaI ACNGT 3 cut(s) 147, 812, 845
TaiI ACGT 2 cut(s) 322, 669
TaqI TCGA 4 cut(s) 75, 335, 560, 700
TaqII GACCGA 1 cut(s) 137
TasI AATT 9 cut(s) 346, 416, 523, 544, 707, 728, 745, 899, 1081
TatI WGTACW 1 cut(s) 1085
TauI GCSGC 5 cut(s) 48, 160, 506, 600, 603
TfiI GAWTC 4 cut(s) 57, 332, 439, 734
Tru1I TTAA 3 cut(s) 27, 216, 522
Tru9I TTAA 3 cut(s) 27, 216, 522
TscAI CASTG 2 cut(s) 152, 850
TseI GCWGC 4 cut(s) 383, 721, 772, 1019
TspDTI ATGAA 5 cut(s) 411, 648, 654, 738, 867
TspGWI ACGGA 5 cut(s) 96, 102, 238, 321, 851
TspRI CASTG 2 cut(s) 152, 850
VpaK11BI GGWCC 1 cut(s) 106
VspI ATTAAT 1 cut(s) 522
XspI CTAG 3 cut(s) 686, 782, 908
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.