Rh6DG401300

Protein POLAR LOCALIZATION DURING ASYMMETRIC DIVISION AND

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0010398
Physical Location & Seq
Reverse (-)
59001995 .. 59003265
1271 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG401300.1

Sequence Viewer

Length: 1071 bp
ATGCAGAAGAAGGAGGAGGAGTCCTTTAAAACCCACGAGACTCGCCGCATTCTCCGAATCGCTGATATTCTACTCGACGACGGAGACGGAGACGGAGACTTGTTTGAAATGGACCAACCCCGAAAGACCGACCACCACCTCACCATTATACAGTGCTCCACGCCGCGCCGGATCGTTTCCCGATGGTTCTCCGCTCTCAAGCGTGCCAGACACAGAAAAGTTAACGCACGGAGCGACAAAAGAGACAACGAAATCGTCAAAGAAAGCAATCTCCCCCACACCAGGTGTTCCACAAATGGTTTCAACAGCGACGGAGGGTCAGGACGTTGTGGTATGGATTCGAGCTCGTTCAATTTGGGGGTGGCGTGTGGTCTGCTTTGTGTGGTTGCTGCTGGTAAAAATGAACTCAACAAGATGGTGGAATTGCGGACACAGATGGAGCTGATTCTCCAAAATGCCAAACAGGAAATGGGCAGTAAGAATGCACTTACAAACAACCCTAAGCCGGCGGCGGAGTCTAATGAGATTAATTTCACTTCTTTCTCCACCAATTTCCAACAAGCATCGACCTCTGGTAGCCAGTTTTCTCTTCAATCTGTTGGCGGCCGCGACGAGTGCTCAGATTGTTGTGTTGGAAATGAAGGAGAAGGAGAAGGAGACGAATACGTGGCAGGAATAGATCAACTAGAGGCAGAGCTTCGAGCCGAATTAGAAAGAATGCAGCTCCAATTGGATTCAGAAAGTAATTCATCCATTTCAAAGTCCCCACAGCAGCAGAGGCTAGAGGGCATGGGAGACATTGGTTCAAACCGTCGTGAAGGGGACTCAGCATCAACGGATTACAGTGATCATGAAATGCTCTGGGGCTGTGGATTTGCTCCGCTTGAACTTGAGAGAAAATTGCATCTAGTGCTGGAAGCGAGACAAGAAGAGCGGATAAAAGAACTGGAAGATGCTTTAGAATGTGCAGAGCAGAAGCTTGAGGAGAAAGAAAGAGAGGTTTCTTGGTGGAGAAACGCTGCAATACTTATGTCAGGCCGTGATCCAGAACCTTCATATTCGCATGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008356 GO:0009987 GO:0044424 GO:0044464 GO:0051301 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

356

Amino Acids

39.85

Weight (kDa)

5.02

Isoelectric Point (pI)

48.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010398)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31805 AT5G10890 AT5G10890
fragaria_vesca FvH4_2g41090
malus_domestica MD08G1057500.v1.1 MD15G1039900.v1.1
prunus_persica Prupe.1G393300_v2.0.a1
pyrus_communis pycom08g04700 pycom15g03730 pycom15g03740
rosa_chinensis RchiOBHm_Chr6g0299451
rosa_laevigata RLG00000011430
rosa_multiflora Rmu_sc0017526.1_g000008 Rmu_sc0037301.1_g000003
rosa_roxburghii Rroxscaffold_7G00168670
rosa_rugosa Rorug06G0288400
rosa_samantha Rh6AG400200 Rh6BG408800 Rh6CG414300 Rh6DG401300
rosa_wichuraiana Rw6G035030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 194, 934
AccII CGCG 2 cut(s) 166, 609
AclWI GGATC 2 cut(s) 179, 1037
AcoI YGGCCR 1 cut(s) 604
AdeI CACNNNGTG 1 cut(s) 285
AfiI CCNNNNNNNGG 2 cut(s) 282, 505
AgsI TTSAA 7 cut(s) 107, 304, 352, 593, 759, 807, 887
AhdI GACNNNNNGTC 1 cut(s) 316
AjnI CCWGG 1 cut(s) 281
AluBI AGCT 5 cut(s) 345, 442, 697, 724, 979
AluI AGCT 5 cut(s) 345, 442, 697, 724, 979
Alw21I GWGCWC 3 cut(s) 158, 347, 620
Alw26I GTCTC 8 cut(s) 32, 78, 84, 90, 237, 651, 789, 916
AlwI GGATC 2 cut(s) 179, 1037
AoxI GGCC 2 cut(s) 604, 1036
ApeKI GCWGC 4 cut(s) 389, 721, 772, 1019
AseI ATTAAT 1 cut(s) 528
AspLEI GCGC 1 cut(s) 168
AspS9I GGNCC 1 cut(s) 112
AsuHPI GGTGA 1 cut(s) 133
AvaII GGWCC 1 cut(s) 112
BanII GRGCYC 1 cut(s) 347
BauI CACGAG 1 cut(s) 35
Bbv12I GWGCWC 3 cut(s) 158, 347, 620
BbvI GCAGC 4 cut(s) 376, 733, 784, 1006
BccI CCATC 3 cut(s) 177, 409, 430
BceAI ACGGC 1 cut(s) 1023
BciT130I CCWGG 1 cut(s) 283
BclI TGATCA 1 cut(s) 847
BcoDI GTCTC 8 cut(s) 32, 78, 84, 90, 237, 651, 789, 916
BfaI CTAG 3 cut(s) 686, 782, 908
BisI GCNGC 9 cut(s) 46, 164, 390, 510, 604, 607, 722, 773, 1020
BlsI GCNGC 9 cut(s) 47, 165, 391, 511, 605, 608, 723, 774, 1021
Bme1390I CCNGG 1 cut(s) 283
Bme18I GGWCC 1 cut(s) 112
BmeRI GACNNNNNGTC 1 cut(s) 316
BmgT120I GGNCC 1 cut(s) 112
BmrFI CCNGG 1 cut(s) 283
BmsI GCATC 4 cut(s) 572, 839, 913, 943
Bpu10I CCTNAGC 1 cut(s) 501
BpuEI CTTGAG 3 cut(s) 182, 911, 1001
BsaAI YACGTR 1 cut(s) 667
BsaXI ACNNNNNCTCC 2 cut(s) 5, 35
Bsc4I CCNNNNNNNGG 2 cut(s) 282, 505
Bse118I RCCGGY 1 cut(s) 505
Bse1I ACTGG 2 cut(s) 580, 951
BseBI CCWGG 1 cut(s) 283
BseGI GGATG 1 cut(s) 749
BseLI CCNNNNNNNGG 2 cut(s) 282, 505
BseMII CTCAG 2 cut(s) 633, 840
BseNI ACTGG 2 cut(s) 580, 951
BseRI GAGGAG 3 cut(s) 29, 32, 998
BseX3I CGGCCG 1 cut(s) 604
BseXI GCAGC 4 cut(s) 376, 733, 784, 1006
BsgI GTGCAG 1 cut(s) 987
Bsh1236I CGCG 2 cut(s) 166, 609
Bsh1285I CGRYCG 1 cut(s) 607
BshFI GGCC 2 cut(s) 606, 1038
BsiEI CGRYCG 1 cut(s) 607
BsiHKAI GWGCWC 3 cut(s) 158, 347, 620
BsiSI CCGG 2 cut(s) 169, 506
BslFI GGGAC 2 cut(s) 748, 836
BslI CCNNNNNNNGG 2 cut(s) 282, 505
BsmAI GTCTC 8 cut(s) 32, 78, 84, 90, 237, 651, 789, 916
BsmBI CGTCTC 3 cut(s) 78, 84, 651
BsmFI GGGAC 2 cut(s) 748, 836
BsmI GAATGC 3 cut(s) 48, 487, 723
BsnI GGCC 2 cut(s) 606, 1038
Bsp1286I GDGCHC 3 cut(s) 158, 347, 620
Bsp143I GATC 4 cut(s) 171, 679, 847, 1042
BspANI GGCC 2 cut(s) 606, 1038
BspCNI CTCAG 2 cut(s) 632, 839
BspFNI CGCG 2 cut(s) 166, 609
BspHI TCATGA 1 cut(s) 850
BspPI GGATC 2 cut(s) 179, 1037
BspQI GCTCTTC 1 cut(s) 924
BsrBI CCGCTC 2 cut(s) 194, 934
BsrFI RCCGGY 1 cut(s) 505
BsrI ACTGG 2 cut(s) 580, 951
BssAI RCCGGY 1 cut(s) 505
BssMI GATC 4 cut(s) 171, 679, 847, 1042
BssSI CACGAG 1 cut(s) 35
Bst2BI CACGAG 1 cut(s) 35
Bst2UI CCWGG 1 cut(s) 283
Bst4CI ACNGT 3 cut(s) 153, 812, 845
Bst6I CTCTTC 2 cut(s) 594, 924
BstAPI GCANNNNNTGC 1 cut(s) 910
BstBAI YACGTR 1 cut(s) 667
BstC8I GCNNGC 2 cut(s) 204, 507
BstDEI CTNAG 3 cut(s) 501, 619, 826
BstF5I GGATG 1 cut(s) 749
BstFNI CGCG 2 cut(s) 166, 609
BstHHI GCGC 1 cut(s) 168
BstKTI GATC 4 cut(s) 174, 682, 850, 1045
BstMAI GTCTC 8 cut(s) 32, 78, 84, 90, 237, 651, 789, 916
BstMBI GATC 4 cut(s) 171, 679, 847, 1042
BstMCI CGRYCG 1 cut(s) 607
BstMWI GCNNNNNNNGC 3 cut(s) 615, 778, 910
BstNI CCWGG 1 cut(s) 283
BstSCI CCNGG 1 cut(s) 281
BstUI CGCG 2 cut(s) 166, 609
BstV1I GCAGC 4 cut(s) 376, 733, 784, 1006
BstZI CGGCCG 1 cut(s) 604
BsuRI GGCC 2 cut(s) 606, 1038
BtsCI GGATG 1 cut(s) 749
BtsIMutI CAGTG 2 cut(s) 158, 850
Cac8I GCNNGC 2 cut(s) 204, 507
CciI TCATGA 1 cut(s) 850
CciNI GCGGCCGC 1 cut(s) 604
CfoI GCGC 1 cut(s) 168
Cfr10I RCCGGY 1 cut(s) 505
Cfr13I GGNCC 1 cut(s) 112
CsiI ACCWGGT 1 cut(s) 281
CviAII CATG 3 cut(s) 790, 851, 1064
DdeI CTNAG 3 cut(s) 501, 619, 826
DpnI GATC 4 cut(s) 173, 681, 849, 1044
DpnII GATC 4 cut(s) 171, 679, 847, 1042
DraI TTTAAA 1 cut(s) 28
DraIII CACNNNGTG 1 cut(s) 285
DriI GACNNNNNGTC 1 cut(s) 316
EaeI YGGCCR 1 cut(s) 604
EagI CGGCCG 1 cut(s) 604
Eam1104I CTCTTC 2 cut(s) 594, 924
Eam1105I GACNNNNNGTC 1 cut(s) 316
EarI CTCTTC 2 cut(s) 594, 924
EciI GGCGGA 1 cut(s) 527
Ecl136II GAGCTC 1 cut(s) 345
EclXI CGGCCG 1 cut(s) 604
Eco24I GRGCYC 1 cut(s) 347
Eco47I GGWCC 1 cut(s) 112
Eco52I CGGCCG 1 cut(s) 604
Eco53kI GAGCTC 1 cut(s) 345
EcoICRI GAGCTC 1 cut(s) 345
EcoRII CCWGG 1 cut(s) 281
EcoT38I GRGCYC 1 cut(s) 347
Esp3I CGTCTC 3 cut(s) 78, 84, 651
FaeI CATG 3 cut(s) 793, 854, 1067
FaiI YATR 7 cut(s) 149, 335, 791, 852, 1031, 1057, 1065
FaqI GGGAC 2 cut(s) 748, 836
FatI CATG 3 cut(s) 789, 850, 1063
FbaI TGATCA 1 cut(s) 847
Fnu4HI GCNGC 9 cut(s) 46, 164, 390, 510, 604, 607, 722, 773, 1020
FokI GGATG 1 cut(s) 736
FriOI GRGCYC 1 cut(s) 347
Fsp4HI GCNGC 9 cut(s) 46, 164, 390, 510, 604, 607, 722, 773, 1020
FspBI CTAG 3 cut(s) 686, 782, 908
GlaI GCGC 1 cut(s) 167
GluI GCNGC 9 cut(s) 46, 164, 390, 510, 604, 607, 722, 773, 1020
HaeIII GGCC 2 cut(s) 606, 1038
HapII CCGG 2 cut(s) 169, 506
HhaI GCGC 1 cut(s) 168
Hin1II CATG 3 cut(s) 793, 854, 1067
Hin6I GCGC 1 cut(s) 166
HinP1I GCGC 1 cut(s) 166
HincII GTYRAC 1 cut(s) 223
HindII GTYRAC 1 cut(s) 223
HindIII AAGCTT 1 cut(s) 977
HinfI GANTC 8 cut(s) 20, 40, 57, 338, 445, 515, 734, 824
HpaI GTTAAC 1 cut(s) 223
HpaII CCGG 2 cut(s) 169, 506
HphI GGTGA 1 cut(s) 133
Hpy166II GTNNAC 1 cut(s) 223
Hpy188I TCNGA 3 cut(s) 56, 622, 739
Hpy188III TCNNGA 5 cut(s) 180, 321, 815, 851, 1046
Hpy8I GTNNAC 1 cut(s) 223
Hpy99I CGWCG 5 cut(s) 80, 83, 314, 614, 816
HpyAV CCTTC 6 cut(s) 4, 635, 641, 647, 812, 1062
HpyCH4III ACNGT 3 cut(s) 153, 812, 845
HpyCH4IV ACGT 2 cut(s) 325, 666
HpyCH4V TGCA 6 cut(s) 4, 485, 721, 904, 968, 1022
HpyF10VI GCNNNNNNNGC 3 cut(s) 615, 778, 910
HpyF3I CTNAG 3 cut(s) 501, 619, 826
HpySE526I ACGT 2 cut(s) 325, 666
Hsp92II CATG 3 cut(s) 793, 854, 1067
HspAI GCGC 1 cut(s) 166
KroI GCCGGC 1 cut(s) 505
KroNI GCCGGC 1 cut(s) 507
Ksp22I TGATCA 1 cut(s) 847
KspAI GTTAAC 1 cut(s) 223
Kzo9I GATC 4 cut(s) 171, 679, 847, 1042
LguI GCTCTTC 1 cut(s) 924
LmnI GCTCC 5 cut(s) 161, 231, 439, 729, 883
Lsp1109I GCAGC 4 cut(s) 376, 733, 784, 1006
LweI GCATC 4 cut(s) 572, 839, 913, 943
MabI ACCWGGT 1 cut(s) 281
MaeI CTAG 3 cut(s) 686, 782, 908
MaeII ACGT 2 cut(s) 325, 666
MalI GATC 4 cut(s) 173, 681, 849, 1044
MbiI CCGCTC 2 cut(s) 194, 934
MboI GATC 4 cut(s) 171, 679, 847, 1042
MboII GAAGA 4 cut(s) 19, 581, 941, 962
MfeI CAATTG 1 cut(s) 728
MhlI GDGCHC 3 cut(s) 158, 347, 620
MluCI AATT 8 cut(s) 352, 422, 529, 550, 707, 728, 745, 899
MlyI GAGTC 4 cut(s) 29, 34, 524, 818
MmeI TCCRAC 2 cut(s) 580, 613
MroNI GCCGGC 1 cut(s) 505
MseI TTAA 3 cut(s) 27, 222, 528
MspI CCGG 2 cut(s) 169, 506
MspR9I CCNGG 1 cut(s) 283
MunI CAATTG 1 cut(s) 728
Mva1269I GAATGC 3 cut(s) 48, 487, 723
MvaI CCWGG 1 cut(s) 283
MvnI CGCG 2 cut(s) 166, 609
MwoI GCNNNNNNNGC 3 cut(s) 615, 778, 910
NaeI GCCGGC 1 cut(s) 507
NdeII GATC 4 cut(s) 171, 679, 847, 1042
NgoMIV GCCGGC 1 cut(s) 505
NlaIII CATG 3 cut(s) 793, 854, 1067
NotI GCGGCCGC 1 cut(s) 604
PagI TCATGA 1 cut(s) 850
PciSI GCTCTTC 1 cut(s) 924
PcsI WCGNNNNNNNCGW 1 cut(s) 231
PctI GAATGC 3 cut(s) 48, 487, 723
PdiI GCCGGC 1 cut(s) 507
PfeI GAWTC 4 cut(s) 57, 338, 445, 734
PkrI GCNGC 9 cut(s) 47, 165, 391, 511, 605, 608, 723, 774, 1021
PleI GAGTC 4 cut(s) 28, 34, 523, 818
PpsI GAGTC 4 cut(s) 28, 34, 523, 818
Ppu21I YACGTR 1 cut(s) 667
PshBI ATTAAT 1 cut(s) 528
Psp124BI GAGCTC 1 cut(s) 347
Psp6I CCWGG 1 cut(s) 281
PspGI CCWGG 1 cut(s) 281
PspPI GGNCC 1 cut(s) 112
SacI GAGCTC 1 cut(s) 347
SapI GCTCTTC 1 cut(s) 924
SaqAI TTAA 3 cut(s) 27, 222, 528
SatI GCNGC 9 cut(s) 46, 164, 390, 510, 604, 607, 722, 773, 1020
Sau3AI GATC 4 cut(s) 171, 679, 847, 1042
Sau96I GGNCC 1 cut(s) 112
SchI GAGTC 4 cut(s) 29, 34, 524, 818
ScrFI CCNGG 1 cut(s) 283
SduI GDGCHC 3 cut(s) 158, 347, 620
SexAI ACCWGGT 1 cut(s) 281
SfaNI GCATC 4 cut(s) 572, 839, 913, 943
SinI GGWCC 1 cut(s) 112
SmlI CTYRAG 3 cut(s) 197, 890, 980
SmoI CTYRAG 3 cut(s) 197, 890, 980
Sse9I AATT 8 cut(s) 352, 422, 529, 550, 707, 728, 745, 899
SspMI CTAG 3 cut(s) 686, 782, 908
SstI GAGCTC 1 cut(s) 347
StyD4I CCNGG 1 cut(s) 281
TaaI ACNGT 3 cut(s) 153, 812, 845
TaiI ACGT 2 cut(s) 328, 669
TaqI TCGA 4 cut(s) 75, 341, 566, 700
TaqII GACCGA 1 cut(s) 143
TasI AATT 8 cut(s) 352, 422, 529, 550, 707, 728, 745, 899
TauI GCSGC 5 cut(s) 48, 166, 512, 606, 609
TfiI GAWTC 4 cut(s) 57, 338, 445, 734
Tru1I TTAA 3 cut(s) 27, 222, 528
Tru9I TTAA 3 cut(s) 27, 222, 528
TscAI CASTG 2 cut(s) 158, 850
TseI GCWGC 4 cut(s) 389, 721, 772, 1019
TspDTI ATGAA 5 cut(s) 417, 654, 738, 867, 1044
TspGWI ACGGA 6 cut(s) 96, 102, 108, 244, 327, 851
TspRI CASTG 2 cut(s) 158, 850
VpaK11BI GGWCC 1 cut(s) 112
VspI ATTAAT 1 cut(s) 528
XcmI CCANNNNNNNNNTGG 1 cut(s) 466
XspI CTAG 3 cut(s) 686, 782, 908
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.