MD15G1039900.v1.1

Protein POLAR LOCALIZATION DURING ASYMMETRIC DIVISION AND

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0010398
Physical Location & Seq
Forward (+)
2823764 .. 2825516
1753 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1039900.v1.1.491

Sequence Viewer

Length: 1260 bp
ATGAGGAAGAAGAAGAAGGACGACCACGATCCCTTCTTTAAAACCCTAAACATTCTCCCGCCTTTCCGTTACTCCAAGACCCGCCACATCCGCATCGCCGACATTCTCGTTGATGAAGAATTGGGATCCGAAACCGACGGCTACGATTGCTCCGGAGACTGCAATATGGTTGGACACCCGCCCCACCTCCCCGAGGACAACGACGACGACGACGACGGATTCATGGCCTTACAGTGGTCCTCCCCGCGCCGTATCATTTCCCGATGGTTGTCGACTCTGAAGCAAGGCAAACGGAGGCGATGCGAGGCCGTACGGAGCCAGAAGAGACCGAAAGAGGTTGCAACGACGGAGAGGGAGACTGGAGACGAGTCAACGCACGCCACCTGTTCGACGAATGGATTGAACGGCGGTGGCGAGGAAACAGAACCAAGACAGATTGTGAAAGATGTGAGCTCAGTCAATTTGGGAGTTGCGTGCGGTTTGGTGTATCTGATCGTCGCCAGTAAAAATGAGCTTGCAAAGACGGCGGAGTTGAGGGCGGAGATGGAGCAGTTGCTTCAAAATGCAAAAGAGGAATTGCAGAGCACGAATTCGCGTTTCGATTCCAGGCCGGTGGAGTCGAATGAGATGAATTTTGCTTCTTCCACAACCGATCTCCAACAGGCTTCGAGTTCGAGCTCTGAGAGCCAGTTTTCGCTTCAATCTGGCATGGTCCGGGAAGTGTGCTCGGAATATGTTAGAAATGGAGAAGGAGAAGTAGAAAGGGATAAATGCGTGAAGGGAATGGATCAACTCGAGGCAGAGCTTGAAGCGGAGTTGGAACGATTGCAGCTCCGTTTAGAATTGGATTCGGATAATCATTCATCCATTTCAAACTACACGCAGCAGCGAAGATTAAAGCCTGTTCAAGACACAGCTCATGGAACAGGCGATGATGGTACCTCAGATTTTGGAGAAGAAATGGACACTCATGAAGCAGAACCAGCAGATTATAACGAAATGCCCTGCGACTTCGGAGTACCTGCACTCGAACTCGAGAGAAGGCTGCACGAACTGCTGGAAGCGAGTCAGGAAGAAAGGATAAAGGAACTCGAAGTTGCATTAGAGTACATGAAGGGCAAGCTTCAGGAGAAGGAAATGGAGGTTTCGTGGTGGAGACAAAATGCGTCTGCAGCACTAACATCGCACCACCATCTAGATCCTTCATCGTCGGGTGCTTCCCAGCACAGTTCGGAGAGTACATTTCACTTGTTTAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008356 GO:0009987 GO:0044424 GO:0044464 GO:0051301 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

420

Amino Acids

47.3

Weight (kDa)

4.89

Isoelectric Point (pI)

58.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010398)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31805 AT5G10890 AT5G10890
fragaria_vesca FvH4_2g41090
malus_domestica MD08G1057500.v1.1 MD15G1039900.v1.1
prunus_persica Prupe.1G393300_v2.0.a1
pyrus_communis pycom08g04700 pycom15g03730 pycom15g03740
rosa_chinensis RchiOBHm_Chr6g0299451
rosa_laevigata RLG00000011430
rosa_multiflora Rmu_sc0017526.1_g000008 Rmu_sc0037301.1_g000003
rosa_roxburghii Rroxscaffold_7G00168670
rosa_rugosa Rorug06G0288400
rosa_samantha Rh6AG400200 Rh6BG408800 Rh6CG414300 Rh6DG401300
rosa_wichuraiana Rw6G035030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 993
Acc36I ACCTGC 1 cut(s) 1030
Acc65I GGTACC 1 cut(s) 938
AccB1I GGYRCC 1 cut(s) 938
AccI GTMKAC 1 cut(s) 272
AccII CGCG 2 cut(s) 247, 595
AccIII TCCGGA 1 cut(s) 152
AclWI GGATC 5 cut(s) 23, 120, 133, 795, 1193
AcsI RAATTY 2 cut(s) 589, 631
AcuI CTGAAG 2 cut(s) 299, 1109
AfaI GTAC 5 cut(s) 312, 940, 1020, 1109, 1240
AfiI CCNNNNNNNGG 2 cut(s) 193, 234
AgsI TTSAA 6 cut(s) 403, 560, 701, 809, 873, 908
AjnI CCWGG 1 cut(s) 605
AluBI AGCT 7 cut(s) 453, 514, 678, 805, 832, 917, 1123
AluI AGCT 7 cut(s) 453, 514, 678, 805, 832, 917, 1123
Alw21I GWGCWC 4 cut(s) 455, 587, 680, 728
Alw26I GTCTC 5 cut(s) 150, 319, 350, 357, 1150
AlwI GGATC 5 cut(s) 23, 120, 133, 795, 1193
Ama87I CYCGRG 3 cut(s) 191, 794, 1034
Aor13HI TCCGGA 1 cut(s) 152
AoxI GGCC 3 cut(s) 225, 306, 608
ApeKI GCWGC 5 cut(s) 829, 883, 886, 1045, 1172
ApoI RAATTY 2 cut(s) 589, 631
Asp718I GGTACC 1 cut(s) 938
AspLEI GCGC 1 cut(s) 249
AspS9I GGNCC 2 cut(s) 237, 712
AsuC2I CCSGG 1 cut(s) 716
AvaI CYCGRG 3 cut(s) 191, 794, 1034
AvaII GGWCC 2 cut(s) 237, 712
BamHI GGATCC 1 cut(s) 125
BanI GGYRCC 1 cut(s) 938
BanII GRGCYC 2 cut(s) 455, 680
Bbv12I GWGCWC 4 cut(s) 455, 587, 680, 728
BbvI GCAGC 5 cut(s) 841, 895, 898, 1032, 1184
BccI CCATC 4 cut(s) 258, 538, 929, 1200
BceAI ACGGC 5 cut(s) 154, 234, 293, 421, 540
BcgI CGANNNNNNTGC 2 cut(s) 1164, 1198
BciT130I CCWGG 1 cut(s) 607
BcnI CCSGG 1 cut(s) 716
BcoDI GTCTC 5 cut(s) 150, 319, 350, 357, 1150
BfaI CTAG 1 cut(s) 1196
BfmI CTRYAG 1 cut(s) 1170
BfuAI ACCTGC 1 cut(s) 1030
BisI GCNGC 5 cut(s) 830, 884, 887, 1046, 1173
BlsI GCNGC 5 cut(s) 831, 885, 888, 1047, 1174
Bme1390I CCNGG 2 cut(s) 607, 716
Bme18I GGWCC 2 cut(s) 237, 712
BmeT110I CYCGRG 3 cut(s) 191, 794, 1034
BmgT120I GGNCC 2 cut(s) 237, 712
BmiI GGNNCC 3 cut(s) 127, 317, 940
BmrFI CCNGG 2 cut(s) 607, 716
BmsI GCATC 2 cut(s) 102, 290
BpmI CTGGAG 1 cut(s) 381
BpuMI CCSGG 1 cut(s) 716
BsaI GGTCTC 1 cut(s) 319
BsaJI CCNNGG 1 cut(s) 192
BsaWI WCCGGW 1 cut(s) 152
BsaXI ACNNNNNCTCC 4 cut(s) 134, 164, 1133, 1163
Bsc4I CCNNNNNNNGG 2 cut(s) 193, 234
Bse118I RCCGGY 1 cut(s) 610
Bse1I ACTGG 3 cut(s) 364, 501, 688
BseAI TCCGGA 1 cut(s) 152
BseBI CCWGG 1 cut(s) 607
BseDI CCNNGG 1 cut(s) 192
BseGI GGATG 2 cut(s) 87, 863
BseLI CCNNNNNNNGG 2 cut(s) 193, 234
BseMII CTCAG 3 cut(s) 468, 672, 957
BseNI ACTGG 3 cut(s) 364, 501, 688
BseXI GCAGC 5 cut(s) 841, 895, 898, 1032, 1184
BseYI CCCAGC 1 cut(s) 1221
BsgI GTGCAG 2 cut(s) 1008, 1031
Bsh1236I CGCG 2 cut(s) 247, 595
BshFI GGCC 3 cut(s) 227, 308, 610
BshNI GGYRCC 1 cut(s) 938
BsiHKAI GWGCWC 4 cut(s) 455, 587, 680, 728
BsiHKCI CYCGRG 3 cut(s) 191, 794, 1034
BsiSI CCGG 3 cut(s) 153, 611, 715
BsiWI CGTACG 1 cut(s) 310
BslI CCNNNNNNNGG 2 cut(s) 193, 234
BsmAI GTCTC 5 cut(s) 150, 319, 350, 357, 1150
BsmBI CGTCTC 1 cut(s) 357
BsnI GGCC 3 cut(s) 227, 308, 610
Bso31I GGTCTC 1 cut(s) 319
BsoBI CYCGRG 3 cut(s) 191, 794, 1034
Bsp1286I GDGCHC 4 cut(s) 455, 587, 680, 728
Bsp13I TCCGGA 1 cut(s) 152
Bsp143I GATC 6 cut(s) 28, 125, 492, 652, 787, 1198
BspANI GGCC 3 cut(s) 227, 308, 610
BspCNI CTCAG 3 cut(s) 467, 673, 956
BspEI TCCGGA 1 cut(s) 152
BspFNI CGCG 2 cut(s) 247, 595
BspHI TCATGA 1 cut(s) 970
BspLI GGNNCC 3 cut(s) 127, 317, 940
BspMAI CTGCAG 1 cut(s) 1174
BspMI ACCTGC 1 cut(s) 1030
BspPI GGATC 5 cut(s) 23, 120, 133, 795, 1193
BspT107I GGYRCC 1 cut(s) 938
BspTNI GGTCTC 1 cut(s) 319
BsrFI RCCGGY 1 cut(s) 610
BsrI ACTGG 3 cut(s) 364, 501, 688
BssAI RCCGGY 1 cut(s) 610
BssECI CCNNGG 1 cut(s) 192
BssMI GATC 6 cut(s) 28, 125, 492, 652, 787, 1198
Bst2UI CCWGG 1 cut(s) 607
Bst4CI ACNGT 2 cut(s) 234, 1229
Bst6I CTCTTC 1 cut(s) 317
BstAPI GCANNNNNTGC 1 cut(s) 1054
BstC8I GCNNGC 4 cut(s) 378, 475, 516, 1121
BstDEI CTNAG 3 cut(s) 454, 681, 943
BstENI CCTNNNNNAGG 1 cut(s) 191
BstF5I GGATG 2 cut(s) 87, 863
BstFNI CGCG 2 cut(s) 247, 595
BstHHI GCGC 1 cut(s) 249
BstKTI GATC 6 cut(s) 31, 128, 495, 655, 790, 1201
BstMAI GTCTC 5 cut(s) 150, 319, 350, 357, 1150
BstMBI GATC 6 cut(s) 28, 125, 492, 652, 787, 1198
BstMWI GCNNNNNNNGC 7 cut(s) 90, 147, 524, 684, 983, 1054, 1172
BstNI CCWGG 1 cut(s) 607
BstSCI CCNGG 2 cut(s) 605, 714
BstSFI CTRYAG 1 cut(s) 1170
BstUI CGCG 2 cut(s) 247, 595
BstV1I GCAGC 5 cut(s) 841, 895, 898, 1032, 1184
BstX2I RGATCY 2 cut(s) 125, 1198
BstXI CCANNNNNNTGG 1 cut(s) 613
BstYI RGATCY 2 cut(s) 125, 1198
BsuRI GGCC 3 cut(s) 227, 308, 610
BtgZI GCGATG 4 cut(s) 79, 313, 945, 1167
BtsCI GGATG 2 cut(s) 87, 863
BtsIMutI CAGTG 1 cut(s) 239
BveI ACCTGC 1 cut(s) 1030
Cac8I GCNNGC 4 cut(s) 378, 475, 516, 1121
CciI TCATGA 1 cut(s) 970
CfoI GCGC 1 cut(s) 249
Cfr10I RCCGGY 1 cut(s) 610
Cfr13I GGNCC 2 cut(s) 237, 712
CseI GACGC 1 cut(s) 1155
Csp6I GTAC 5 cut(s) 311, 939, 1019, 1108, 1239
CviAII CATG 5 cut(s) 223, 709, 920, 971, 1111
CviQI GTAC 5 cut(s) 311, 939, 1019, 1108, 1239
DdeI CTNAG 3 cut(s) 454, 681, 943
DpnI GATC 6 cut(s) 30, 127, 494, 654, 789, 1200
DpnII GATC 6 cut(s) 28, 125, 492, 652, 787, 1198
DraI TTTAAA 1 cut(s) 40
Eam1104I CTCTTC 1 cut(s) 317
EarI CTCTTC 1 cut(s) 317
EciI GGCGGA 2 cut(s) 542, 554
Ecl136II GAGCTC 2 cut(s) 453, 678
Eco24I GRGCYC 2 cut(s) 455, 680
Eco31I GGTCTC 1 cut(s) 319
Eco47I GGWCC 2 cut(s) 237, 712
Eco53kI GAGCTC 2 cut(s) 453, 678
Eco57I CTGAAG 2 cut(s) 299, 1109
Eco88I CYCGRG 3 cut(s) 191, 794, 1034
EcoICRI GAGCTC 2 cut(s) 453, 678
EcoNI CCTNNNNNAGG 1 cut(s) 191
EcoRI GAATTC 1 cut(s) 589
EcoRII CCWGG 1 cut(s) 605
EcoT38I GRGCYC 2 cut(s) 455, 680
Esp3I CGTCTC 1 cut(s) 357
FaeI CATG 5 cut(s) 226, 712, 923, 974, 1114
FaiI YATR 8 cut(s) 167, 224, 710, 735, 921, 972, 993, 1112
FatI CATG 5 cut(s) 222, 708, 919, 970, 1110
FauI CCCGC 4 cut(s) 66, 89, 186, 252
FblI GTMKAC 1 cut(s) 272
Fnu4HI GCNGC 5 cut(s) 830, 884, 887, 1046, 1173
FokI GGATG 2 cut(s) 74, 850
FriOI GRGCYC 2 cut(s) 455, 680
Fsp4HI GCNGC 5 cut(s) 830, 884, 887, 1046, 1173
FspBI CTAG 1 cut(s) 1196
GlaI GCGC 1 cut(s) 248
GluI GCNGC 5 cut(s) 830, 884, 887, 1046, 1173
GsaI CCCAGC 1 cut(s) 1225
GsuI CTGGAG 1 cut(s) 381
HaeIII GGCC 3 cut(s) 227, 308, 610
HapII CCGG 3 cut(s) 153, 611, 715
HgaI GACGC 1 cut(s) 1155
HhaI GCGC 1 cut(s) 249
Hin1II CATG 5 cut(s) 226, 712, 923, 974, 1114
Hin6I GCGC 1 cut(s) 247
HinP1I GCGC 1 cut(s) 247
HincII GTYRAC 2 cut(s) 273, 372
HindII GTYRAC 2 cut(s) 273, 372
HindIII AAGCTT 1 cut(s) 1121
HinfI GANTC 7 cut(s) 219, 274, 368, 602, 617, 848, 1066
HpaII CCGG 3 cut(s) 153, 611, 715
Hpy166II GTNNAC 2 cut(s) 273, 372
Hpy188I TCNGA 9 cut(s) 130, 279, 492, 682, 730, 853, 946, 1016, 1234
Hpy188III TCNNGA 8 cut(s) 153, 261, 908, 971, 1036, 1070, 1127, 1196
Hpy8I GTNNAC 2 cut(s) 273, 372
HpyAV CCTTC 8 cut(s) 10, 43, 743, 772, 1035, 1108, 1126, 1212
HpyCH4III ACNGT 2 cut(s) 234, 1229
HpyF10VI GCNNNNNNNGC 7 cut(s) 90, 147, 524, 684, 983, 1054, 1172
HpyF3I CTNAG 3 cut(s) 454, 681, 943
Hsp92II CATG 5 cut(s) 226, 712, 923, 974, 1114
HspAI GCGC 1 cut(s) 247
Kpn2I TCCGGA 1 cut(s) 152
KpnI GGTACC 1 cut(s) 942
Kzo9I GATC 6 cut(s) 28, 125, 492, 652, 787, 1198
LmnI GCTCC 4 cut(s) 155, 315, 547, 837
Lsp1109I GCAGC 5 cut(s) 841, 895, 898, 1032, 1184
LweI GCATC 2 cut(s) 102, 290
MaeI CTAG 1 cut(s) 1196
MaeIII GTNAC 1 cut(s) 68
MalI GATC 6 cut(s) 30, 127, 494, 654, 789, 1200
MboI GATC 6 cut(s) 28, 125, 492, 652, 787, 1198
MboII GAAGA 9 cut(s) 19, 22, 25, 128, 334, 633, 903, 968, 1085
MflI RGATCY 2 cut(s) 125, 1198
MhlI GDGCHC 4 cut(s) 455, 587, 680, 728
MluCI AATT 6 cut(s) 119, 460, 575, 589, 631, 842
MlyI GAGTC 4 cut(s) 268, 377, 626, 1075
MmeI TCCRAC 3 cut(s) 151, 682, 798
MroI TCCGGA 1 cut(s) 152
MseI TTAA 2 cut(s) 39, 896
MspI CCGG 3 cut(s) 153, 611, 715
MspR9I CCNGG 2 cut(s) 607, 716
MvaI CCWGG 1 cut(s) 607
MvnI CGCG 2 cut(s) 247, 595
MwoI GCNNNNNNNGC 7 cut(s) 90, 147, 524, 684, 983, 1054, 1172
NciI CCSGG 1 cut(s) 716
NdeII GATC 6 cut(s) 28, 125, 492, 652, 787, 1198
NlaIII CATG 5 cut(s) 226, 712, 923, 974, 1114
NlaIV GGNNCC 3 cut(s) 127, 317, 940
PaeR7I CTCGAG 2 cut(s) 794, 1034
PagI TCATGA 1 cut(s) 970
PcsI WCGNNNNNNNCGW 3 cut(s) 207, 210, 411
PfeI GAWTC 3 cut(s) 219, 602, 848
Pfl23II CGTACG 1 cut(s) 310
PfoI TCCNGGA 1 cut(s) 714
PkrI GCNGC 5 cut(s) 831, 885, 888, 1047, 1174
PleI GAGTC 4 cut(s) 268, 376, 625, 1074
PpsI GAGTC 4 cut(s) 268, 376, 625, 1074
PsiI TTATAA 1 cut(s) 993
Psp124BI GAGCTC 2 cut(s) 455, 680
Psp6I CCWGG 1 cut(s) 605
PspFI CCCAGC 1 cut(s) 1221
PspGI CCWGG 1 cut(s) 605
PspLI CGTACG 1 cut(s) 310
PspN4I GGNNCC 3 cut(s) 127, 317, 940
PspPI GGNCC 2 cut(s) 237, 712
PspXI VCTCGAGB 1 cut(s) 794
PstI CTGCAG 1 cut(s) 1174
PsuI RGATCY 2 cut(s) 125, 1198
RsaI GTAC 5 cut(s) 312, 940, 1020, 1109, 1240
RsaNI GTAC 5 cut(s) 311, 939, 1019, 1108, 1239
SacI GAGCTC 2 cut(s) 455, 680
SalI GTCGAC 1 cut(s) 271
SaqAI TTAA 2 cut(s) 39, 896
SatI GCNGC 5 cut(s) 830, 884, 887, 1046, 1173
Sau3AI GATC 6 cut(s) 28, 125, 492, 652, 787, 1198
Sau96I GGNCC 2 cut(s) 237, 712
SchI GAGTC 4 cut(s) 268, 377, 626, 1075
ScrFI CCNGG 2 cut(s) 607, 716
SduI GDGCHC 4 cut(s) 455, 587, 680, 728
SfaNI GCATC 2 cut(s) 102, 290
SfcI CTRYAG 1 cut(s) 1170
Sfr274I CTCGAG 2 cut(s) 794, 1034
SinI GGWCC 2 cut(s) 237, 712
SlaI CTCGAG 2 cut(s) 794, 1034
SmlI CTYRAG 2 cut(s) 794, 1034
SmoI CTYRAG 2 cut(s) 794, 1034
Sse9I AATT 6 cut(s) 119, 460, 575, 589, 631, 842
SspMI CTAG 1 cut(s) 1196
SstI GAGCTC 2 cut(s) 455, 680
StyD4I CCNGG 2 cut(s) 605, 714
TaaI ACNGT 2 cut(s) 234, 1229
TaqII GACCGA 1 cut(s) 343
TasI AATT 6 cut(s) 119, 460, 575, 589, 631, 842
TatI WGTACW 2 cut(s) 1107, 1238
TfiI GAWTC 3 cut(s) 219, 602, 848
Tru1I TTAA 2 cut(s) 39, 896
Tru9I TTAA 2 cut(s) 39, 896
TscAI CASTG 1 cut(s) 239
TseI GCWGC 5 cut(s) 829, 883, 886, 1045, 1172
TspDTI ATGAA 7 cut(s) 129, 211, 644, 852, 987, 1127, 1194
TspGWI ACGGA 6 cut(s) 56, 231, 307, 328, 362, 824
TspRI CASTG 1 cut(s) 239
VpaK11BI GGWCC 2 cut(s) 237, 712
XagI CCTNNNNNAGG 1 cut(s) 191
XapI RAATTY 2 cut(s) 589, 631
XbaI TCTAGA 1 cut(s) 1195
XhoI CTCGAG 2 cut(s) 794, 1034
XmiI GTMKAC 1 cut(s) 272
XspI CTAG 1 cut(s) 1196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.