RLG00000011430

Protein POLAR LOCALIZATION DURING ASYMMETRIC DIVISION AND

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0010398
Physical Location & Seq
Forward (+)
9409151 .. 9410414
1264 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011430

Sequence Viewer

Length: 1065 bp
ATGCAGAAGCAGGAGGAGGTTTCGTCCAAGTCCTTTAAAACCCACGAGACTCGCCGCATTCTCCGAATCGCTGATATTCTACTCGACGACGGAGACTTGTTTGAAATGGACCAACCCCGAAAGACCGACCACCACCTCACCATTATACAGTGCTCCACGCCGCGCCGGATCGTCTCCCGATGGTTCTCCGCTCTCAAGCGTGCCAGACCCAGAAAAGTTAACGCACGGAGCGACAAAAGAGACAACGAAGTCGTCAAAGAAAGCAGTCTCCCCCCACACACCAGGTGTTCCACAAATGGTTTCAACAGCGACGGAGGGTCAGGACGTTGTGGTATGGATTCGAGCTCGTTCAATTTGGGGGTGGCGTGTGGTCTGCTTTGTGTGGTTGCTGCTGGTAAAAATGAACTCAACAAGATGGTGGAATTGCGGACACAGATGGAGCTGATTCTTCAAAATGCCAAACAGGAAATGGGCACTAAGAATGCACTTATAAACAACCCTAAGCCGGCGGCGGAGTCTAATGAGATTAATTTCACTTCTTTCTCCACCAATTTCCAACAAGCATCGACCTCTGGTAGCCAGTTTTCTCTTCAATCTGTTGGCGGCCGCGACGAGTGCTCAGATTATTGTGTTGGTAATGAAGGAGAAGGAGACGAATACGTGGCAGGAATAGATCAACTAGAGACAGAGCTTCGAGCCGAATTAGAAAGATTGCAGCTCCAATTGGATTCAGAAAGTAATTCATCCATTTCAAAGTCCCCACAGCAGCAGAGGCTAGAGGGTATGGGAGACATTGGTTCAAACCGTCGTGAAGGAGACTCAGCATCAACGGATTACAGTGATCGTGAAATGCTCTGGGGCTGTGGATTTGCTCCGCTTGAACTTGAGAGAAAATTGCATCTAGTGCTGGAAGCGAGACAAGAAGAGCGGATAAAAGAACTGGAAGATGCTTTAGAATGTGCAGAGCAGAAGCTTGAGGAGAAAGAAAGAGAGGTTTCTTGGTGGAGAAACGCTGCAATACTTATGTCAGGCCATGATCCAGAACCTTCATATTCGCATGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008356 GO:0009987 GO:0044424 GO:0044464 GO:0051301 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

355

Amino Acids

39.71

Weight (kDa)

5.15

Isoelectric Point (pI)

51.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010398)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31805 AT5G10890 AT5G10890
fragaria_vesca FvH4_2g41090
malus_domestica MD08G1057500.v1.1 MD15G1039900.v1.1
prunus_persica Prupe.1G393300_v2.0.a1
pyrus_communis pycom08g04700 pycom15g03730 pycom15g03740
rosa_chinensis RchiOBHm_Chr6g0299451
rosa_laevigata RLG00000011430
rosa_multiflora Rmu_sc0017526.1_g000008 Rmu_sc0037301.1_g000003
rosa_roxburghii Rroxscaffold_7G00168670
rosa_rugosa Rorug06G0288400
rosa_samantha Rh6AG400200 Rh6BG408800 Rh6CG414300 Rh6DG401300
rosa_wichuraiana Rw6G035030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 491
AasI GACNNNNNNGTC 1 cut(s) 248
AccBSI CCGCTC 2 cut(s) 191, 928
AccII CGCG 2 cut(s) 163, 609
AclWI GGATC 2 cut(s) 176, 1031
AcoI YGGCCR 1 cut(s) 604
AdeI CACNNNGTG 1 cut(s) 285
AfiI CCNNNNNNNGG 1 cut(s) 505
AgsI TTSAA 8 cut(s) 104, 304, 352, 452, 593, 753, 801, 881
AhdI GACNNNNNGTC 1 cut(s) 316
AjnI CCWGG 1 cut(s) 281
AluBI AGCT 5 cut(s) 345, 442, 691, 718, 973
AluI AGCT 5 cut(s) 345, 442, 691, 718, 973
Alw21I GWGCWC 3 cut(s) 155, 347, 620
AlwI GGATC 2 cut(s) 176, 1031
AoxI GGCC 2 cut(s) 604, 1030
ApeKI GCWGC 4 cut(s) 389, 715, 766, 1013
AseI ATTAAT 1 cut(s) 528
AspLEI GCGC 1 cut(s) 165
AspS9I GGNCC 1 cut(s) 109
AsuHPI GGTGA 1 cut(s) 130
AvaII GGWCC 1 cut(s) 109
BaeGI GKGCMC 1 cut(s) 476
BanII GRGCYC 1 cut(s) 347
BauI CACGAG 1 cut(s) 44
Bbv12I GWGCWC 3 cut(s) 155, 347, 620
BbvI GCAGC 4 cut(s) 376, 727, 778, 1000
BccI CCATC 3 cut(s) 174, 409, 430
BciT130I CCWGG 1 cut(s) 283
BfaI CTAG 3 cut(s) 680, 776, 902
BisI GCNGC 9 cut(s) 55, 161, 390, 510, 604, 607, 716, 767, 1014
BlsI GCNGC 9 cut(s) 56, 162, 391, 511, 605, 608, 717, 768, 1015
Bme1390I CCNGG 1 cut(s) 283
Bme18I GGWCC 1 cut(s) 109
BmeRI GACNNNNNGTC 1 cut(s) 316
BmgT120I GGNCC 1 cut(s) 109
BmrFI CCNGG 1 cut(s) 283
BmsI GCATC 4 cut(s) 572, 833, 907, 937
Bpu10I CCTNAGC 1 cut(s) 501
BpuEI CTTGAG 3 cut(s) 179, 905, 995
BsaAI YACGTR 1 cut(s) 661
BsaXI ACNNNNNCTCC 2 cut(s) 8, 38
Bsc4I CCNNNNNNNGG 1 cut(s) 505
Bse118I RCCGGY 1 cut(s) 505
Bse1I ACTGG 2 cut(s) 580, 945
BseBI CCWGG 1 cut(s) 283
BseGI GGATG 1 cut(s) 743
BseLI CCNNNNNNNGG 1 cut(s) 505
BseMII CTCAG 2 cut(s) 633, 834
BseNI ACTGG 2 cut(s) 580, 945
BseRI GAGGAG 2 cut(s) 29, 992
BseSI GKGCMC 1 cut(s) 476
BseX3I CGGCCG 1 cut(s) 604
BseXI GCAGC 4 cut(s) 376, 727, 778, 1000
BsgI GTGCAG 1 cut(s) 981
Bsh1236I CGCG 2 cut(s) 163, 609
Bsh1285I CGRYCG 1 cut(s) 607
BshFI GGCC 2 cut(s) 606, 1032
BsiEI CGRYCG 1 cut(s) 607
BsiHKAI GWGCWC 3 cut(s) 155, 347, 620
BsiSI CCGG 2 cut(s) 166, 506
BslFI GGGAC 1 cut(s) 742
BslI CCNNNNNNNGG 1 cut(s) 505
BsmBI CGTCTC 2 cut(s) 178, 645
BsmFI GGGAC 1 cut(s) 742
BsmI GAATGC 2 cut(s) 57, 487
BsnI GGCC 2 cut(s) 606, 1032
Bsp1286I GDGCHC 4 cut(s) 155, 347, 476, 620
Bsp143I GATC 4 cut(s) 168, 673, 841, 1036
BspANI GGCC 2 cut(s) 606, 1032
BspCNI CTCAG 2 cut(s) 632, 833
BspFNI CGCG 2 cut(s) 163, 609
BspPI GGATC 2 cut(s) 176, 1031
BspQI GCTCTTC 1 cut(s) 918
BsrBI CCGCTC 2 cut(s) 191, 928
BsrFI RCCGGY 1 cut(s) 505
BsrI ACTGG 2 cut(s) 580, 945
BssAI RCCGGY 1 cut(s) 505
BssMI GATC 4 cut(s) 168, 673, 841, 1036
BssSI CACGAG 1 cut(s) 44
Bst2BI CACGAG 1 cut(s) 44
Bst2UI CCWGG 1 cut(s) 283
Bst4CI ACNGT 3 cut(s) 150, 806, 839
Bst6I CTCTTC 2 cut(s) 594, 918
BstAPI GCANNNNNTGC 1 cut(s) 904
BstBAI YACGTR 1 cut(s) 661
BstC8I GCNNGC 2 cut(s) 201, 507
BstDEI CTNAG 4 cut(s) 477, 501, 619, 820
BstF5I GGATG 1 cut(s) 743
BstFNI CGCG 2 cut(s) 163, 609
BstHHI GCGC 1 cut(s) 165
BstKTI GATC 4 cut(s) 171, 676, 844, 1039
BstMBI GATC 4 cut(s) 168, 673, 841, 1036
BstMCI CGRYCG 1 cut(s) 607
BstMWI GCNNNNNNNGC 3 cut(s) 615, 772, 904
BstNI CCWGG 1 cut(s) 283
BstSCI CCNGG 1 cut(s) 281
BstSLI GKGCMC 1 cut(s) 476
BstUI CGCG 2 cut(s) 163, 609
BstV1I GCAGC 4 cut(s) 376, 727, 778, 1000
BstZI CGGCCG 1 cut(s) 604
BsuRI GGCC 2 cut(s) 606, 1032
BtsCI GGATG 1 cut(s) 743
BtsIMutI CAGTG 2 cut(s) 155, 844
Cac8I GCNNGC 2 cut(s) 201, 507
CciNI GCGGCCGC 1 cut(s) 604
CfoI GCGC 1 cut(s) 165
Cfr10I RCCGGY 1 cut(s) 505
Cfr13I GGNCC 1 cut(s) 109
CsiI ACCWGGT 1 cut(s) 281
CviAII CATG 2 cut(s) 1034, 1058
DdeI CTNAG 4 cut(s) 477, 501, 619, 820
DpnI GATC 4 cut(s) 170, 675, 843, 1038
DpnII GATC 4 cut(s) 168, 673, 841, 1036
DraI TTTAAA 1 cut(s) 37
DraIII CACNNNGTG 1 cut(s) 285
DrdI GACNNNNNNGTC 1 cut(s) 248
DriI GACNNNNNGTC 1 cut(s) 316
DseDI GACNNNNNNGTC 1 cut(s) 248
EaeI YGGCCR 1 cut(s) 604
EagI CGGCCG 1 cut(s) 604
Eam1104I CTCTTC 2 cut(s) 594, 918
Eam1105I GACNNNNNGTC 1 cut(s) 316
EarI CTCTTC 2 cut(s) 594, 918
EciI GGCGGA 1 cut(s) 527
Ecl136II GAGCTC 1 cut(s) 345
EclXI CGGCCG 1 cut(s) 604
Eco24I GRGCYC 1 cut(s) 347
Eco47I GGWCC 1 cut(s) 109
Eco52I CGGCCG 1 cut(s) 604
Eco53kI GAGCTC 1 cut(s) 345
EcoICRI GAGCTC 1 cut(s) 345
EcoRII CCWGG 1 cut(s) 281
EcoT38I GRGCYC 1 cut(s) 347
Esp3I CGTCTC 2 cut(s) 178, 645
FaeI CATG 2 cut(s) 1037, 1061
FaiI YATR 8 cut(s) 146, 335, 491, 785, 1025, 1035, 1051, 1059
FaqI GGGAC 1 cut(s) 742
FatI CATG 2 cut(s) 1033, 1057
Fnu4HI GCNGC 9 cut(s) 55, 161, 390, 510, 604, 607, 716, 767, 1014
FokI GGATG 1 cut(s) 730
FriOI GRGCYC 1 cut(s) 347
Fsp4HI GCNGC 9 cut(s) 55, 161, 390, 510, 604, 607, 716, 767, 1014
FspBI CTAG 3 cut(s) 680, 776, 902
GlaI GCGC 1 cut(s) 164
GluI GCNGC 9 cut(s) 55, 161, 390, 510, 604, 607, 716, 767, 1014
HaeIII GGCC 2 cut(s) 606, 1032
HapII CCGG 2 cut(s) 166, 506
HhaI GCGC 1 cut(s) 165
Hin1II CATG 2 cut(s) 1037, 1061
Hin6I GCGC 1 cut(s) 163
HinP1I GCGC 1 cut(s) 163
HincII GTYRAC 1 cut(s) 220
HindII GTYRAC 1 cut(s) 220
HindIII AAGCTT 1 cut(s) 971
HinfI GANTC 7 cut(s) 49, 66, 338, 445, 515, 728, 818
HpaI GTTAAC 1 cut(s) 220
HpaII CCGG 2 cut(s) 166, 506
HphI GGTGA 1 cut(s) 130
Hpy166II GTNNAC 1 cut(s) 220
Hpy188I TCNGA 3 cut(s) 65, 622, 733
Hpy188III TCNNGA 5 cut(s) 177, 321, 809, 845, 1040
Hpy8I GTNNAC 1 cut(s) 220
Hpy99I CGWCG 5 cut(s) 89, 92, 314, 614, 810
HpyAV CCTTC 4 cut(s) 635, 641, 806, 1056
HpyCH4III ACNGT 3 cut(s) 150, 806, 839
HpyCH4IV ACGT 2 cut(s) 325, 660
HpyCH4V TGCA 6 cut(s) 4, 485, 715, 898, 962, 1016
HpyF10VI GCNNNNNNNGC 3 cut(s) 615, 772, 904
HpyF3I CTNAG 4 cut(s) 477, 501, 619, 820
HpySE526I ACGT 2 cut(s) 325, 660
Hsp92II CATG 2 cut(s) 1037, 1061
HspAI GCGC 1 cut(s) 163
KroI GCCGGC 1 cut(s) 505
KroNI GCCGGC 1 cut(s) 507
KspAI GTTAAC 1 cut(s) 220
Kzo9I GATC 4 cut(s) 168, 673, 841, 1036
LguI GCTCTTC 1 cut(s) 918
LmnI GCTCC 5 cut(s) 158, 228, 439, 723, 877
Lsp1109I GCAGC 4 cut(s) 376, 727, 778, 1000
LweI GCATC 4 cut(s) 572, 833, 907, 937
MabI ACCWGGT 1 cut(s) 281
MaeI CTAG 3 cut(s) 680, 776, 902
MaeII ACGT 2 cut(s) 325, 660
MalI GATC 4 cut(s) 170, 675, 843, 1038
MbiI CCGCTC 2 cut(s) 191, 928
MboI GATC 4 cut(s) 168, 673, 841, 1036
MboII GAAGA 4 cut(s) 440, 581, 935, 956
MfeI CAATTG 1 cut(s) 722
MhlI GDGCHC 4 cut(s) 155, 347, 476, 620
MluCI AATT 8 cut(s) 352, 422, 529, 550, 701, 722, 739, 893
MlyI GAGTC 3 cut(s) 43, 524, 812
MmeI TCCRAC 1 cut(s) 580
MnlI CCTC 9 cut(s) 7, 10, 146, 308, 580, 765, 772, 970, 985
MroNI GCCGGC 1 cut(s) 505
MseI TTAA 3 cut(s) 36, 219, 528
MspI CCGG 2 cut(s) 166, 506
MspR9I CCNGG 1 cut(s) 283
MunI CAATTG 1 cut(s) 722
Mva1269I GAATGC 2 cut(s) 57, 487
MvaI CCWGG 1 cut(s) 283
MvnI CGCG 2 cut(s) 163, 609
MwoI GCNNNNNNNGC 3 cut(s) 615, 772, 904
NaeI GCCGGC 1 cut(s) 507
NdeII GATC 4 cut(s) 168, 673, 841, 1036
NgoMIV GCCGGC 1 cut(s) 505
NlaIII CATG 2 cut(s) 1037, 1061
NotI GCGGCCGC 1 cut(s) 604
PciSI GCTCTTC 1 cut(s) 918
PcsI WCGNNNNNNNCGW 1 cut(s) 228
PctI GAATGC 2 cut(s) 57, 487
PdiI GCCGGC 1 cut(s) 507
PfeI GAWTC 4 cut(s) 66, 338, 445, 728
PkrI GCNGC 9 cut(s) 56, 162, 391, 511, 605, 608, 717, 768, 1015
PleI GAGTC 3 cut(s) 43, 523, 812
PpsI GAGTC 3 cut(s) 43, 523, 812
Ppu21I YACGTR 1 cut(s) 661
PshBI ATTAAT 1 cut(s) 528
PsiI TTATAA 1 cut(s) 491
Psp124BI GAGCTC 1 cut(s) 347
Psp6I CCWGG 1 cut(s) 281
PspGI CCWGG 1 cut(s) 281
PspPI GGNCC 1 cut(s) 109
SacI GAGCTC 1 cut(s) 347
SapI GCTCTTC 1 cut(s) 918
SaqAI TTAA 3 cut(s) 36, 219, 528
SatI GCNGC 9 cut(s) 55, 161, 390, 510, 604, 607, 716, 767, 1014
Sau3AI GATC 4 cut(s) 168, 673, 841, 1036
Sau96I GGNCC 1 cut(s) 109
SchI GAGTC 3 cut(s) 43, 524, 812
ScrFI CCNGG 1 cut(s) 283
SduI GDGCHC 4 cut(s) 155, 347, 476, 620
SexAI ACCWGGT 1 cut(s) 281
SfaNI GCATC 4 cut(s) 572, 833, 907, 937
SinI GGWCC 1 cut(s) 109
SmlI CTYRAG 3 cut(s) 194, 884, 974
SmoI CTYRAG 3 cut(s) 194, 884, 974
Sse9I AATT 8 cut(s) 352, 422, 529, 550, 701, 722, 739, 893
SspMI CTAG 3 cut(s) 680, 776, 902
SstI GAGCTC 1 cut(s) 347
StyD4I CCNGG 1 cut(s) 281
TaaI ACNGT 3 cut(s) 150, 806, 839
TaiI ACGT 2 cut(s) 328, 663
TaqI TCGA 4 cut(s) 84, 341, 566, 694
TaqII GACCGA 1 cut(s) 140
TasI AATT 8 cut(s) 352, 422, 529, 550, 701, 722, 739, 893
TauI GCSGC 5 cut(s) 57, 163, 512, 606, 609
TfiI GAWTC 4 cut(s) 66, 338, 445, 728
Tru1I TTAA 3 cut(s) 36, 219, 528
Tru9I TTAA 3 cut(s) 36, 219, 528
TscAI CASTG 2 cut(s) 155, 844
TseI GCWGC 4 cut(s) 389, 715, 766, 1013
TspDTI ATGAA 4 cut(s) 417, 654, 732, 1038
TspGWI ACGGA 4 cut(s) 105, 241, 327, 845
TspRI CASTG 2 cut(s) 155, 844
VpaK11BI GGWCC 1 cut(s) 109
VspI ATTAAT 1 cut(s) 528
XcmI CCANNNNNNNNNTGG 1 cut(s) 466
XspI CTAG 3 cut(s) 680, 776, 902
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.