Rmu_sc0017526.1_g000008

Protein POLAR LOCALIZATION DURING ASYMMETRIC DIVISION AND

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0017526.1
OG0010398
Physical Location & Seq
Reverse (-)
43336 .. 44609
1274 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0017526.1_g000008.1.cds

Sequence Viewer

Length: 1080 bp
atgcagaagaaggaggaggaggtgggggtttcgtccaagtcctttaaaacccacgagactcgccgcattctccgaatcgctgatattctactcgacgacagagacggagacggagacggagacttgtttgaaatggaccgaccccgaaagaccgaccaccacctcaccattatacagtgctccacgccgcgccggatcgtctcccgatggttctccgctctcaagcgtgccagacccagaaaagttaacgcacggagcgacaaaagagacaacgaaatcgtcaaagaaagcagtctcccccgcaccatgtgttccacaaatggtttcaacagcgacggagggccaggacgttgtggtatggattcgagctcgttcaatttgggggtggcgtgtggtctgctttgtgtggttgctgctggtaaaaatgaactgaacaagatggtggaattgcggacacagatggagctgattcttcaaaatgccaaacaggaaatgggcagtaagaatgcacttataaacaaccctaagccggcggcggagtctaatgagattcatttcgcttctttctccaccaatttccaacaagcatcgacctctggtagccagttttctcttcaatctgttggcggccgcgacgagtgctcagattattgtgttggaaatgaaggagaatacgtggcaggaatagatcaactagaggcagagcttcgagccgaattagaaagaatgcagctccaattggattctgaaagtaattcatccatttcaaagtccccacagcagcagaggctagagggtatgggagacattggttcaaaccgtcgtgaaggggactcagcatcaacggattacagtgatcatgaaatgctctggggctgtggatttgctccgcttgaacttgagagaaaattgcatctagtgctggaagcgagacaagaagagcggataaaagaactggaagatgctttagaatgtgcagagcagaagcttgaggagaaagaaagagaggtttcttggtggagaaacgctgcaatacttatttcaggccgtgatccagaaccttcatattcgcatggttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008356 GO:0009987 GO:0044424 GO:0044464 GO:0051301 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

359

Amino Acids

40.21

Weight (kDa)

5.22

Isoelectric Point (pI)

47.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010398)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31805 AT5G10890 AT5G10890
fragaria_vesca FvH4_2g41090
malus_domestica MD08G1057500.v1.1 MD15G1039900.v1.1
prunus_persica Prupe.1G393300_v2.0.a1
pyrus_communis pycom08g04700 pycom15g03730 pycom15g03740
rosa_chinensis RchiOBHm_Chr6g0299451
rosa_laevigata RLG00000011430
rosa_multiflora Rmu_sc0017526.1_g000008 Rmu_sc0037301.1_g000003
rosa_roxburghii Rroxscaffold_7G00168670
rosa_rugosa Rorug06G0288400
rosa_samantha Rh6AG400200 Rh6BG408800 Rh6CG414300 Rh6DG401300
rosa_wichuraiana Rw6G035030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 515
AccBSI CCGCTC 2 cut(s) 218, 943
AccII CGCG 2 cut(s) 190, 633
AclWI GGATC 2 cut(s) 203, 1046
AcoI YGGCCR 1 cut(s) 628
AdeI CACNNNGTG 1 cut(s) 309
AfiI CCNNNNNNNGG 1 cut(s) 529
AgsI TTSAA 8 cut(s) 131, 328, 376, 476, 617, 768, 816, 896
AjnI CCWGG 1 cut(s) 343
AluBI AGCT 5 cut(s) 369, 466, 706, 733, 988
AluI AGCT 5 cut(s) 369, 466, 706, 733, 988
Alw21I GWGCWC 3 cut(s) 182, 371, 644
AlwI GGATC 2 cut(s) 203, 1046
AoxI GGCC 3 cut(s) 341, 628, 1045
ApeKI GCWGC 4 cut(s) 413, 730, 781, 1028
AspLEI GCGC 1 cut(s) 192
AspS9I GGNCC 2 cut(s) 136, 341
AsuHPI GGTGA 1 cut(s) 157
AvaII GGWCC 1 cut(s) 136
BanII GRGCYC 1 cut(s) 371
BauI CACGAG 1 cut(s) 53
Bbv12I GWGCWC 3 cut(s) 182, 371, 644
BbvI GCAGC 4 cut(s) 400, 742, 793, 1015
BccI CCATC 3 cut(s) 201, 433, 454
BceAI ACGGC 1 cut(s) 1032
BciT130I CCWGG 1 cut(s) 345
BclI TGATCA 1 cut(s) 856
BfaI CTAG 3 cut(s) 695, 791, 917
BisI GCNGC 9 cut(s) 64, 188, 414, 534, 628, 631, 731, 782, 1029
BlsI GCNGC 9 cut(s) 65, 189, 415, 535, 629, 632, 732, 783, 1030
Bme1390I CCNGG 1 cut(s) 345
Bme18I GGWCC 1 cut(s) 136
BmgT120I GGNCC 2 cut(s) 136, 341
BmrFI CCNGG 1 cut(s) 345
BmsI GCATC 4 cut(s) 596, 848, 922, 952
Bpu10I CCTNAGC 1 cut(s) 525
BpuEI CTTGAG 3 cut(s) 206, 920, 1010
BsaAI YACGTR 1 cut(s) 676
BsaXI ACNNNNNCTCC 2 cut(s) 660, 690
Bsc4I CCNNNNNNNGG 1 cut(s) 529
Bse118I RCCGGY 1 cut(s) 529
Bse1I ACTGG 2 cut(s) 604, 960
BseBI CCWGG 1 cut(s) 345
BseGI GGATG 1 cut(s) 758
BseLI CCNNNNNNNGG 1 cut(s) 529
BseMII CTCAG 2 cut(s) 657, 849
BseNI ACTGG 2 cut(s) 604, 960
BseRI GAGGAG 3 cut(s) 29, 32, 1007
BseX3I CGGCCG 1 cut(s) 628
BseXI GCAGC 4 cut(s) 400, 742, 793, 1015
BsgI GTGCAG 1 cut(s) 996
Bsh1236I CGCG 2 cut(s) 190, 633
Bsh1285I CGRYCG 1 cut(s) 631
BshFI GGCC 3 cut(s) 343, 630, 1047
BsiEI CGRYCG 1 cut(s) 631
BsiHKAI GWGCWC 3 cut(s) 182, 371, 644
BsiSI CCGG 2 cut(s) 193, 530
BslFI GGGAC 2 cut(s) 757, 845
BslI CCNNNNNNNGG 1 cut(s) 529
BsmBI CGTCTC 4 cut(s) 96, 102, 108, 205
BsmFI GGGAC 2 cut(s) 757, 845
BsmI GAATGC 3 cut(s) 66, 511, 732
BsnI GGCC 3 cut(s) 343, 630, 1047
Bsp1286I GDGCHC 3 cut(s) 182, 371, 644
Bsp143I GATC 4 cut(s) 195, 688, 856, 1051
BspANI GGCC 3 cut(s) 343, 630, 1047
BspCNI CTCAG 2 cut(s) 656, 848
BspFNI CGCG 2 cut(s) 190, 633
BspHI TCATGA 1 cut(s) 859
BspPI GGATC 2 cut(s) 203, 1046
BspQI GCTCTTC 1 cut(s) 933
BsrBI CCGCTC 2 cut(s) 218, 943
BsrFI RCCGGY 1 cut(s) 529
BsrI ACTGG 2 cut(s) 604, 960
BssAI RCCGGY 1 cut(s) 529
BssMI GATC 4 cut(s) 195, 688, 856, 1051
BssSI CACGAG 1 cut(s) 53
Bst2BI CACGAG 1 cut(s) 53
Bst2UI CCWGG 1 cut(s) 345
Bst4CI ACNGT 3 cut(s) 177, 821, 854
Bst6I CTCTTC 2 cut(s) 618, 933
BstAPI GCANNNNNTGC 1 cut(s) 919
BstBAI YACGTR 1 cut(s) 676
BstC8I GCNNGC 2 cut(s) 228, 531
BstDEI CTNAG 3 cut(s) 525, 643, 835
BstF5I GGATG 1 cut(s) 758
BstFNI CGCG 2 cut(s) 190, 633
BstHHI GCGC 1 cut(s) 192
BstKTI GATC 4 cut(s) 198, 691, 859, 1054
BstMBI GATC 4 cut(s) 195, 688, 856, 1051
BstMCI CGRYCG 1 cut(s) 631
BstMWI GCNNNNNNNGC 3 cut(s) 639, 787, 919
BstNI CCWGG 1 cut(s) 345
BstSCI CCNGG 1 cut(s) 343
BstUI CGCG 2 cut(s) 190, 633
BstV1I GCAGC 4 cut(s) 400, 742, 793, 1015
BstZI CGGCCG 1 cut(s) 628
BsuRI GGCC 3 cut(s) 343, 630, 1047
BtsCI GGATG 1 cut(s) 758
BtsIMutI CAGTG 2 cut(s) 182, 859
Cac8I GCNNGC 2 cut(s) 228, 531
CciI TCATGA 1 cut(s) 859
CciNI GCGGCCGC 1 cut(s) 628
CfoI GCGC 1 cut(s) 192
Cfr10I RCCGGY 1 cut(s) 529
Cfr13I GGNCC 2 cut(s) 136, 341
CviAII CATG 3 cut(s) 307, 860, 1073
DdeI CTNAG 3 cut(s) 525, 643, 835
DpnI GATC 4 cut(s) 197, 690, 858, 1053
DpnII GATC 4 cut(s) 195, 688, 856, 1051
DraI TTTAAA 1 cut(s) 46
DraIII CACNNNGTG 1 cut(s) 309
EaeI YGGCCR 1 cut(s) 628
EagI CGGCCG 1 cut(s) 628
Eam1104I CTCTTC 2 cut(s) 618, 933
EarI CTCTTC 2 cut(s) 618, 933
EciI GGCGGA 1 cut(s) 551
Ecl136II GAGCTC 1 cut(s) 369
EclXI CGGCCG 1 cut(s) 628
Eco24I GRGCYC 1 cut(s) 371
Eco47I GGWCC 1 cut(s) 136
Eco52I CGGCCG 1 cut(s) 628
Eco53kI GAGCTC 1 cut(s) 369
EcoICRI GAGCTC 1 cut(s) 369
EcoRII CCWGG 1 cut(s) 343
EcoT38I GRGCYC 1 cut(s) 371
Esp3I CGTCTC 4 cut(s) 96, 102, 108, 205
FaeI CATG 3 cut(s) 310, 863, 1076
FaiI YATR 8 cut(s) 173, 308, 359, 515, 800, 861, 1066, 1074
FaqI GGGAC 2 cut(s) 757, 845
FatI CATG 3 cut(s) 306, 859, 1072
FauI CCCGC 1 cut(s) 308
FbaI TGATCA 1 cut(s) 856
Fnu4HI GCNGC 9 cut(s) 64, 188, 414, 534, 628, 631, 731, 782, 1029
FokI GGATG 1 cut(s) 745
FriOI GRGCYC 1 cut(s) 371
Fsp4HI GCNGC 9 cut(s) 64, 188, 414, 534, 628, 631, 731, 782, 1029
FspBI CTAG 3 cut(s) 695, 791, 917
GlaI GCGC 1 cut(s) 191
GluI GCNGC 9 cut(s) 64, 188, 414, 534, 628, 631, 731, 782, 1029
HaeIII GGCC 3 cut(s) 343, 630, 1047
HapII CCGG 2 cut(s) 193, 530
HhaI GCGC 1 cut(s) 192
Hin1II CATG 3 cut(s) 310, 863, 1076
Hin6I GCGC 1 cut(s) 190
HinP1I GCGC 1 cut(s) 190
HincII GTYRAC 1 cut(s) 247
HindII GTYRAC 1 cut(s) 247
HindIII AAGCTT 1 cut(s) 986
HinfI GANTC 8 cut(s) 58, 75, 362, 469, 539, 550, 743, 833
HpaI GTTAAC 1 cut(s) 247
HpaII CCGG 2 cut(s) 193, 530
HphI GGTGA 1 cut(s) 157
Hpy166II GTNNAC 1 cut(s) 247
Hpy188I TCNGA 3 cut(s) 74, 646, 748
Hpy188III TCNNGA 4 cut(s) 204, 824, 860, 1055
Hpy8I GTNNAC 1 cut(s) 247
Hpy99I CGWCG 4 cut(s) 98, 338, 638, 825
HpyAV CCTTC 4 cut(s) 4, 659, 821, 1071
HpyCH4III ACNGT 3 cut(s) 177, 821, 854
HpyCH4IV ACGT 2 cut(s) 349, 675
HpyCH4V TGCA 6 cut(s) 4, 509, 730, 913, 977, 1031
HpyF10VI GCNNNNNNNGC 3 cut(s) 639, 787, 919
HpyF3I CTNAG 3 cut(s) 525, 643, 835
HpySE526I ACGT 2 cut(s) 349, 675
Hsp92II CATG 3 cut(s) 310, 863, 1076
HspAI GCGC 1 cut(s) 190
KroI GCCGGC 1 cut(s) 529
KroNI GCCGGC 1 cut(s) 531
Ksp22I TGATCA 1 cut(s) 856
KspAI GTTAAC 1 cut(s) 247
Kzo9I GATC 4 cut(s) 195, 688, 856, 1051
LguI GCTCTTC 1 cut(s) 933
LmnI GCTCC 5 cut(s) 185, 255, 463, 738, 892
Lsp1109I GCAGC 4 cut(s) 400, 742, 793, 1015
LweI GCATC 4 cut(s) 596, 848, 922, 952
MaeI CTAG 3 cut(s) 695, 791, 917
MaeII ACGT 2 cut(s) 349, 675
MalI GATC 4 cut(s) 197, 690, 858, 1053
MbiI CCGCTC 2 cut(s) 218, 943
MboI GATC 4 cut(s) 195, 688, 856, 1051
MboII GAAGA 5 cut(s) 19, 464, 605, 950, 971
MfeI CAATTG 1 cut(s) 737
MhlI GDGCHC 3 cut(s) 182, 371, 644
MluCI AATT 7 cut(s) 376, 446, 574, 716, 737, 754, 908
MlyI GAGTC 3 cut(s) 52, 548, 827
MmeI TCCRAC 2 cut(s) 604, 637
MroNI GCCGGC 1 cut(s) 529
MseI TTAA 2 cut(s) 45, 246
MspI CCGG 2 cut(s) 193, 530
MspR9I CCNGG 1 cut(s) 345
MunI CAATTG 1 cut(s) 737
Mva1269I GAATGC 3 cut(s) 66, 511, 732
MvaI CCWGG 1 cut(s) 345
MvnI CGCG 2 cut(s) 190, 633
MwoI GCNNNNNNNGC 3 cut(s) 639, 787, 919
NaeI GCCGGC 1 cut(s) 531
NdeII GATC 4 cut(s) 195, 688, 856, 1051
NgoMIV GCCGGC 1 cut(s) 529
NlaIII CATG 3 cut(s) 310, 863, 1076
NotI GCGGCCGC 1 cut(s) 628
PagI TCATGA 1 cut(s) 859
PciSI GCTCTTC 1 cut(s) 933
PcsI WCGNNNNNNNCGW 1 cut(s) 255
PctI GAATGC 3 cut(s) 66, 511, 732
PdiI GCCGGC 1 cut(s) 531
PfeI GAWTC 5 cut(s) 75, 362, 469, 550, 743
PkrI GCNGC 9 cut(s) 65, 189, 415, 535, 629, 632, 732, 783, 1030
PleI GAGTC 3 cut(s) 52, 547, 827
PpsI GAGTC 3 cut(s) 52, 547, 827
Ppu21I YACGTR 1 cut(s) 676
PsiI TTATAA 1 cut(s) 515
Psp124BI GAGCTC 1 cut(s) 371
Psp6I CCWGG 1 cut(s) 343
PspGI CCWGG 1 cut(s) 343
PspPI GGNCC 2 cut(s) 136, 341
SacI GAGCTC 1 cut(s) 371
SapI GCTCTTC 1 cut(s) 933
SaqAI TTAA 2 cut(s) 45, 246
SatI GCNGC 9 cut(s) 64, 188, 414, 534, 628, 631, 731, 782, 1029
Sau3AI GATC 4 cut(s) 195, 688, 856, 1051
Sau96I GGNCC 2 cut(s) 136, 341
SchI GAGTC 3 cut(s) 52, 548, 827
ScrFI CCNGG 1 cut(s) 345
SduI GDGCHC 3 cut(s) 182, 371, 644
SfaNI GCATC 4 cut(s) 596, 848, 922, 952
SinI GGWCC 1 cut(s) 136
SmlI CTYRAG 3 cut(s) 221, 899, 989
SmoI CTYRAG 3 cut(s) 221, 899, 989
Sse9I AATT 7 cut(s) 376, 446, 574, 716, 737, 754, 908
SspMI CTAG 3 cut(s) 695, 791, 917
SstI GAGCTC 1 cut(s) 371
StyD4I CCNGG 1 cut(s) 343
TaaI ACNGT 3 cut(s) 177, 821, 854
TaiI ACGT 2 cut(s) 352, 678
TaqI TCGA 4 cut(s) 93, 365, 590, 709
TaqII GACCGA 2 cut(s) 153, 167
TasI AATT 7 cut(s) 376, 446, 574, 716, 737, 754, 908
TauI GCSGC 5 cut(s) 66, 190, 536, 630, 633
TfiI GAWTC 5 cut(s) 75, 362, 469, 550, 743
Tru1I TTAA 2 cut(s) 45, 246
Tru9I TTAA 2 cut(s) 45, 246
TscAI CASTG 2 cut(s) 182, 859
TseI GCWGC 4 cut(s) 413, 730, 781, 1028
TspDTI ATGAA 6 cut(s) 441, 542, 678, 747, 876, 1053
TspGWI ACGGA 6 cut(s) 120, 126, 132, 268, 351, 860
TspRI CASTG 2 cut(s) 182, 859
VpaK11BI GGWCC 1 cut(s) 136
XcmI CCANNNNNNNNNTGG 1 cut(s) 490
XspI CTAG 3 cut(s) 695, 791, 917
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.