FvH4_2g41090

Protein POLAR LOCALIZATION DURING ASYMMETRIC DIVISION AND

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0010398
Physical Location & Seq
Forward (+)
29146821 .. 29148573
1753 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g41090.t1

Sequence Viewer

Length: 945 bp
ATGCAGAAGAAGCAGCAATTTAAAACCCCCGAGACTCGCCGCATTCTCCGCGTGGCTGATATTCTTCTCGTCGACGGAGACGGAGACTTGGATGATATGGAGAAACCCGGAAAGTCTATGACTCAGTGTTCCACGCCGCGCCGCATCGTCTCCCGATGGTTCTCCGTTCTCAAGCGTCGCAGACCAACCAAGGTTTACGCACGGAGCGATAAAGGGGACGAGCCAATCATCGGAGTGTCAGAAGCAGGGTGTGGTGTGGATTCGAGGTCGAGGTCGTTCAATTTGGGGGTGGCGTCCGGTCTGCTTTGTGTGATCGCTGCTGGTAAACATGAGCTGAACAAGATGGTGGAATTGCGGAGTCAGATGGAGGTGTTTCTCCAAAATGCCAAACAGGAGTTGGGCAGTAAGCCGGTGGAGTCTAATGACATTAATTTCACTTCTTTCTCCACCAATTTCCAACAAGACTCCACCTCTGGTAGCCAGTTTTCTCTTCAATCTGTTGCCGTCCGCGACGAGTGCTCCTCCGATTGTGTTGGAAACCAGAGAGAAGGAGACGAGTGTGTGGCAGGAATGGATCAACTAGAGGCAGAGCTTCACGCCGAGTTAGAAAGAATGCAACTCCAATTGGATTCTGAAAATGATCCGCAGCAGCAATTGCTAGAGGATATGGGAGACATTGGTTCAAACCGTGGTGAAGGAGACTCAGCGTCAACGGATTACAGTGATGAAATGCTTTGGGGCTCTGGAGTTGCTCCGCTCGAACTCGAGAGAAAATTGCATCTAGTGCTTGAAGCGAGACAAGAAGAGCGGATAAAAGAACTGGAAGATGCTTTAGAACGTGCAGAGCAGAGGCTTCAGGAGAAAGAAATAGAGGTTTCATGGTGGAGAGACACTGCAAGACTCATGTCGGCCCATGATTCAGGACCTTCATATTCGCAGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008356 GO:0009987 GO:0044424 GO:0044464 GO:0051301 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

315

Amino Acids

35.25

Weight (kDa)

4.76

Isoelectric Point (pI)

56.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010398)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31805 AT5G10890 AT5G10890
fragaria_vesca FvH4_2g41090
malus_domestica MD08G1057500.v1.1 MD15G1039900.v1.1
prunus_persica Prupe.1G393300_v2.0.a1
pyrus_communis pycom08g04700 pycom15g03730 pycom15g03740
rosa_chinensis RchiOBHm_Chr6g0299451
rosa_laevigata RLG00000011430
rosa_multiflora Rmu_sc0017526.1_g000008 Rmu_sc0037301.1_g000003
rosa_roxburghii Rroxscaffold_7G00168670
rosa_rugosa Rorug06G0288400
rosa_samantha Rh6AG400200 Rh6BG408800 Rh6CG414300 Rh6DG401300
rosa_wichuraiana Rw6G035030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 757, 808
AccI GTMKAC 1 cut(s) 72
AccII CGCG 3 cut(s) 51, 139, 510
AciI CCGC 9 cut(s) 40, 49, 137, 142, 355, 508, 644, 755, 808
AclWI GGATC 2 cut(s) 582, 635
AcuI CTGAAG 1 cut(s) 839
AcyI GRCGYC 1 cut(s) 293
AfiI CCNNNNNNNGG 1 cut(s) 230
AgsI TTSAA 4 cut(s) 280, 494, 684, 791
AhdI GACNNNNNGTC 1 cut(s) 706
AluBI AGCT 2 cut(s) 334, 592
AluI AGCT 2 cut(s) 334, 592
Alw21I GWGCWC 1 cut(s) 521
Alw26I GTCTC 9 cut(s) 26, 72, 78, 154, 546, 666, 693, 790, 882
AlwI GGATC 2 cut(s) 582, 635
Ama87I CYCGRG 2 cut(s) 29, 764
AoxI GGCC 1 cut(s) 909
ApeKI GCWGC 4 cut(s) 13, 317, 646, 649
AseI ATTAAT 1 cut(s) 429
AspLEI GCGC 1 cut(s) 141
AspS9I GGNCC 2 cut(s) 910, 923
AsuC2I CCSGG 1 cut(s) 108
AsuHPI GGTGA 1 cut(s) 704
AvaI CYCGRG 2 cut(s) 29, 764
AvaII GGWCC 1 cut(s) 923
BanII GRGCYC 1 cut(s) 743
Bbv12I GWGCWC 1 cut(s) 521
BbvI GCAGC 4 cut(s) 25, 304, 658, 661
BccI CCATC 3 cut(s) 150, 337, 358
BceAI ACGGC 1 cut(s) 488
BcnI CCSGG 1 cut(s) 108
BcoDI GTCTC 9 cut(s) 26, 72, 78, 154, 546, 666, 693, 790, 882
BfaI CTAG 3 cut(s) 581, 659, 782
BisI GCNGC 7 cut(s) 14, 40, 137, 142, 318, 647, 650
BlsI GCNGC 7 cut(s) 15, 41, 138, 143, 319, 648, 651
Bme1390I CCNGG 1 cut(s) 108
Bme18I GGWCC 1 cut(s) 923
BmeRI GACNNNNNGTC 1 cut(s) 706
BmeT110I CYCGRG 2 cut(s) 29, 764
BmgT120I GGNCC 2 cut(s) 910, 923
BmrFI CCNGG 1 cut(s) 108
BmsI GCATC 3 cut(s) 153, 787, 817
BoxI GACNNNNGTC 1 cut(s) 904
BplI GAGNNNNNCTC 2 cut(s) 506, 538
BpmI CTGGAG 1 cut(s) 765
BpuEI CTTGAG 1 cut(s) 155
BpuMI CCSGG 1 cut(s) 108
BsaHI GRCGYC 1 cut(s) 293
BsaJI CCNNGG 2 cut(s) 189, 688
BsaWI WCCGGW 1 cut(s) 296
BsaXI ACNNNNNCTCC 2 cut(s) 503, 533
Bsc4I CCNNNNNNNGG 1 cut(s) 230
Bse118I RCCGGY 1 cut(s) 409
Bse1I ACTGG 2 cut(s) 481, 825
BseDI CCNNGG 2 cut(s) 189, 688
BseGI GGATG 1 cut(s) 97
BseLI CCNNNNNNNGG 1 cut(s) 230
BseMII CTCAG 2 cut(s) 137, 717
BseNI ACTGG 2 cut(s) 481, 825
BseRI GAGGAG 1 cut(s) 511
BseXI GCAGC 4 cut(s) 25, 304, 658, 661
BsgI GTGCAG 1 cut(s) 861
Bsh1236I CGCG 3 cut(s) 51, 139, 510
BshFI GGCC 1 cut(s) 911
BsiHKAI GWGCWC 1 cut(s) 521
BsiHKCI CYCGRG 2 cut(s) 29, 764
BsiSI CCGG 3 cut(s) 108, 297, 410
BslFI GGGAC 1 cut(s) 230
BslI CCNNNNNNNGG 1 cut(s) 230
BsmAI GTCTC 9 cut(s) 26, 72, 78, 154, 546, 666, 693, 790, 882
BsmBI CGTCTC 3 cut(s) 72, 154, 546
BsmFI GGGAC 1 cut(s) 230
BsmI GAATGC 2 cut(s) 42, 618
BsnI GGCC 1 cut(s) 911
BsoBI CYCGRG 2 cut(s) 29, 764
Bsp1286I GDGCHC 2 cut(s) 521, 743
Bsp143I GATC 3 cut(s) 312, 574, 640
BspACI CCGC 9 cut(s) 40, 49, 137, 142, 355, 508, 644, 755, 808
BspANI GGCC 1 cut(s) 911
BspCNI CTCAG 2 cut(s) 136, 716
BspFNI CGCG 3 cut(s) 51, 139, 510
BspPI GGATC 2 cut(s) 582, 635
BspQI GCTCTTC 1 cut(s) 798
BsrBI CCGCTC 2 cut(s) 757, 808
BsrFI RCCGGY 1 cut(s) 409
BsrI ACTGG 2 cut(s) 481, 825
BssAI RCCGGY 1 cut(s) 409
BssECI CCNNGG 2 cut(s) 189, 688
BssMI GATC 3 cut(s) 312, 574, 640
BssNI GRCGYC 1 cut(s) 293
BssT1I CCWWGG 1 cut(s) 189
Bst4CI ACNGT 2 cut(s) 689, 722
Bst6I CTCTTC 2 cut(s) 495, 798
BstACI GRCGYC 1 cut(s) 293
BstAPI GCANNNNNTGC 2 cut(s) 655, 784
BstDEI CTNAG 2 cut(s) 123, 703
BstDSI CCRYGG 1 cut(s) 688
BstF5I GGATG 1 cut(s) 97
BstFNI CGCG 3 cut(s) 51, 139, 510
BstHHI GCGC 1 cut(s) 141
BstKTI GATC 3 cut(s) 315, 577, 643
BstMAI GTCTC 9 cut(s) 26, 72, 78, 154, 546, 666, 693, 790, 882
BstMBI GATC 3 cut(s) 312, 574, 640
BstMWI GCNNNNNNNGC 5 cut(s) 10, 48, 516, 655, 784
BstPAI GACNNNNGTC 1 cut(s) 904
BstSCI CCNGG 1 cut(s) 106
BstUI CGCG 3 cut(s) 51, 139, 510
BstV1I GCAGC 4 cut(s) 25, 304, 658, 661
BsuRI GGCC 1 cut(s) 911
BtgI CCRYGG 1 cut(s) 688
BtsCI GGATG 1 cut(s) 97
BtsI GCAGTG 1 cut(s) 891
BtsIMutI CAGTG 3 cut(s) 131, 727, 891
CfoI GCGC 1 cut(s) 141
Cfr10I RCCGGY 1 cut(s) 409
Cfr13I GGNCC 2 cut(s) 910, 923
CseI GACGC 3 cut(s) 164, 282, 696
CviAII CATG 4 cut(s) 329, 879, 904, 914
CviJI RGCY 9 cut(s) 56, 223, 334, 409, 480, 592, 741, 853, 911
CviKI_1 RGCY 9 cut(s) 56, 223, 334, 409, 480, 592, 741, 853, 911
DdeI CTNAG 2 cut(s) 123, 703
DpnI GATC 3 cut(s) 314, 576, 642
DpnII GATC 3 cut(s) 312, 574, 640
DraI TTTAAA 1 cut(s) 22
DriI GACNNNNNGTC 1 cut(s) 706
Eam1104I CTCTTC 2 cut(s) 495, 798
Eam1105I GACNNNNNGTC 1 cut(s) 706
EarI CTCTTC 2 cut(s) 495, 798
Eco130I CCWWGG 1 cut(s) 189
Eco24I GRGCYC 1 cut(s) 743
Eco47I GGWCC 1 cut(s) 923
Eco57I CTGAAG 1 cut(s) 839
Eco88I CYCGRG 2 cut(s) 29, 764
EcoO109I RGGNCCY 1 cut(s) 923
EcoT14I CCWWGG 1 cut(s) 189
EcoT38I GRGCYC 1 cut(s) 743
ErhI CCWWGG 1 cut(s) 189
Esp3I CGTCTC 3 cut(s) 72, 154, 546
FaeI CATG 4 cut(s) 332, 882, 907, 917
FaiI YATR 8 cut(s) 98, 119, 330, 668, 880, 905, 915, 931
FaqI GGGAC 1 cut(s) 230
FatI CATG 4 cut(s) 328, 878, 903, 913
FblI GTMKAC 1 cut(s) 72
Fnu4HI GCNGC 7 cut(s) 14, 40, 137, 142, 318, 647, 650
FokI GGATG 1 cut(s) 104
FriOI GRGCYC 1 cut(s) 743
Fsp4HI GCNGC 7 cut(s) 14, 40, 137, 142, 318, 647, 650
FspBI CTAG 3 cut(s) 581, 659, 782
GlaI GCGC 1 cut(s) 140
GluI GCNGC 7 cut(s) 14, 40, 137, 142, 318, 647, 650
GsuI CTGGAG 1 cut(s) 765
HaeIII GGCC 1 cut(s) 911
HapII CCGG 3 cut(s) 108, 297, 410
HgaI GACGC 3 cut(s) 164, 282, 696
HhaI GCGC 1 cut(s) 141
Hin1I GRCGYC 1 cut(s) 293
Hin1II CATG 4 cut(s) 332, 882, 907, 917
Hin6I GCGC 1 cut(s) 139
HinP1I GCGC 1 cut(s) 139
HincII GTYRAC 2 cut(s) 73, 711
HindII GTYRAC 2 cut(s) 73, 711
HpaII CCGG 3 cut(s) 108, 297, 410
HphI GGTGA 1 cut(s) 704
Hpy166II GTNNAC 4 cut(s) 73, 196, 326, 711
Hpy188I TCNGA 5 cut(s) 233, 241, 363, 526, 634
Hpy188III TCNNGA 5 cut(s) 153, 744, 766, 857, 921
Hpy8I GTNNAC 4 cut(s) 73, 196, 326, 711
Hpy99I CGWCG 4 cut(s) 74, 77, 180, 515
HpyAV CCTTC 3 cut(s) 542, 689, 936
HpyCH4III ACNGT 2 cut(s) 689, 722
HpyCH4IV ACGT 1 cut(s) 838
HpyCH4V TGCA 5 cut(s) 4, 616, 778, 842, 896
HpyF10VI GCNNNNNNNGC 5 cut(s) 10, 48, 516, 655, 784
HpyF3I CTNAG 2 cut(s) 123, 703
HpySE526I ACGT 1 cut(s) 838
Hsp92I GRCGYC 1 cut(s) 293
Hsp92II CATG 4 cut(s) 332, 882, 907, 917
HspAI GCGC 1 cut(s) 139
Kzo9I GATC 3 cut(s) 312, 574, 640
LguI GCTCTTC 1 cut(s) 798
LmnI GCTCC 3 cut(s) 204, 524, 757
Lsp1109I GCAGC 4 cut(s) 25, 304, 658, 661
LweI GCATC 3 cut(s) 153, 787, 817
MaeI CTAG 3 cut(s) 581, 659, 782
MaeII ACGT 1 cut(s) 838
MalI GATC 3 cut(s) 314, 576, 642
MbiI CCGCTC 2 cut(s) 757, 808
MboI GATC 3 cut(s) 312, 574, 640
MboII GAAGA 5 cut(s) 19, 56, 482, 815, 836
MfeI CAATTG 2 cut(s) 623, 653
MhlI GDGCHC 2 cut(s) 521, 743
MluCI AATT 8 cut(s) 17, 280, 350, 430, 451, 623, 653, 773
MlyI GAGTC 7 cut(s) 28, 115, 367, 425, 458, 695, 894
MmeI TCCRAC 2 cut(s) 481, 514
MnlI CCTC 9 cut(s) 258, 264, 361, 481, 532, 577, 655, 843, 865
MseI TTAA 2 cut(s) 21, 429
MslI CAYNNNNRTG 1 cut(s) 233
MspI CCGG 3 cut(s) 108, 297, 410
MspR9I CCNGG 1 cut(s) 108
MunI CAATTG 2 cut(s) 623, 653
Mva1269I GAATGC 2 cut(s) 42, 618
MvnI CGCG 3 cut(s) 51, 139, 510
MwoI GCNNNNNNNGC 5 cut(s) 10, 48, 516, 655, 784
NciI CCSGG 1 cut(s) 108
NdeII GATC 3 cut(s) 312, 574, 640
NlaIII CATG 4 cut(s) 332, 882, 907, 917
NmeAIII GCCGAG 1 cut(s) 625
PaeR7I CTCGAG 1 cut(s) 764
PciSI GCTCTTC 1 cut(s) 798
PcsI WCGNNNNNNNCGW 1 cut(s) 204
PctI GAATGC 2 cut(s) 42, 618
PfeI GAWTC 3 cut(s) 260, 629, 917
PkrI GCNGC 7 cut(s) 15, 41, 138, 143, 319, 648, 651
PleI GAGTC 7 cut(s) 28, 115, 366, 424, 458, 695, 894
PpsI GAGTC 7 cut(s) 28, 115, 366, 424, 458, 695, 894
PpuMI RGGWCCY 1 cut(s) 923
PshAI GACNNNNGTC 1 cut(s) 904
PshBI ATTAAT 1 cut(s) 429
Psp5II RGGWCCY 1 cut(s) 923
PspPI GGNCC 2 cut(s) 910, 923
PspPPI RGGWCCY 1 cut(s) 923
RseI CAYNNNNRTG 1 cut(s) 233
SalI GTCGAC 1 cut(s) 71
SapI GCTCTTC 1 cut(s) 798
SaqAI TTAA 2 cut(s) 21, 429
SatI GCNGC 7 cut(s) 14, 40, 137, 142, 318, 647, 650
Sau3AI GATC 3 cut(s) 312, 574, 640
Sau96I GGNCC 2 cut(s) 910, 923
SchI GAGTC 7 cut(s) 28, 115, 367, 425, 458, 695, 894
ScrFI CCNGG 1 cut(s) 108
SduI GDGCHC 2 cut(s) 521, 743
SfaNI GCATC 3 cut(s) 153, 787, 817
Sfr274I CTCGAG 1 cut(s) 764
SgrDI CGTCGACG 1 cut(s) 71
SinI GGWCC 1 cut(s) 923
SlaI CTCGAG 1 cut(s) 764
SmiMI CAYNNNNRTG 1 cut(s) 233
SmlI CTYRAG 2 cut(s) 170, 764
SmoI CTYRAG 2 cut(s) 170, 764
Sse9I AATT 8 cut(s) 17, 280, 350, 430, 451, 623, 653, 773
SsiI CCGC 9 cut(s) 40, 49, 137, 142, 355, 508, 644, 755, 808
SspMI CTAG 3 cut(s) 581, 659, 782
StyD4I CCNGG 1 cut(s) 106
StyI CCWWGG 1 cut(s) 189
TaaI ACNGT 2 cut(s) 689, 722
TaiI ACGT 1 cut(s) 841
TaqI TCGA 5 cut(s) 72, 263, 269, 759, 765
TasI AATT 8 cut(s) 17, 280, 350, 430, 451, 623, 653, 773
TauI GCSGC 3 cut(s) 42, 139, 144
TfiI GAWTC 3 cut(s) 260, 629, 917
Tru1I TTAA 2 cut(s) 21, 429
Tru9I TTAA 2 cut(s) 21, 429
TscAI CASTG 3 cut(s) 131, 727, 898
TseI GCWGC 4 cut(s) 13, 317, 646, 649
TspDTI ATGAA 3 cut(s) 741, 867, 918
TspGWI ACGGA 5 cut(s) 90, 96, 154, 217, 728
TspRI CASTG 3 cut(s) 131, 727, 898
VpaK11BI GGWCC 1 cut(s) 923
VspI ATTAAT 1 cut(s) 429
XcmI CCANNNNNNNNNTGG 1 cut(s) 394
XhoI CTCGAG 1 cut(s) 764
XmiI GTMKAC 1 cut(s) 72
XspI CTAG 3 cut(s) 581, 659, 782
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.