pycom15g03740

Protein POLAR LOCALIZATION DURING ASYMMETRIC DIVISION AND

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0010398
Physical Location & Seq
Forward (+)
2280990 .. 2281794
805 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g03740.1

Sequence Viewer

Length: 717 bp
ATGGAGCAGTTGCTTCAAAATGCAAAAGAGGAATTGCAGAGCAAGAATTCGCGTTTCGATTCCAGGCCGGTGGAGTCGAATGAGATGAATTTTGCTTCTTCCACAACCGATCTCCAACAGGCTTCGAGTTCGAGCTCTGAGAGCCGGTTTTCGCTTCAATCTGGCATGGGTCGGGAAGTGTGCTCGGAATATGTTAGAAATGGAGAAGGAGAAGTAGAAAGGGATAAATTCGTGGAGGGAATGGATCAACTCGAGGCAGAGCTTGAAGCGGAGTTGGAACAATTGCAGCTCCGCTTAGAATTGGATTCGGAAAATCATTCATCCAATTCTAACTACCCGCAGCAGCAAAGATTAAAGGCTGTTCAAGACACAGCTCATGGAACAGGCGATGGTGGTATCTCAAATTTTGGAGAAGAAATCGACACTCATGAAGCAGCACCAGCAGATTATAACGAAATGCCCTGTGACTTCAGAGTACCTGCACTCGAACTCGAGAGAAGGCTGCACGAACTGCTGGAAGCAAGTCAGGAAGAACGGATAAAGGAACTCGAAGTTGCATTAGAGTACATGAAGGACAAGCTTCACGAGAAGGAAATGGAGGTTTCGTGGTGGAGACAAAATGCGTCTGCAGCACTAACATCGCACCACCATCTAGATCCTTCATCGTCGGGTGCTTCCCAGTGCAGTTCGGAGAGTACATTTCACTTGTTTAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008356 GO:0009987 GO:0044424 GO:0044464 GO:0051301 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

239

Amino Acids

27.0

Weight (kDa)

4.61

Isoelectric Point (pI)

57.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010398)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31805 AT5G10890 AT5G10890
fragaria_vesca FvH4_2g41090
malus_domestica MD08G1057500.v1.1 MD15G1039900.v1.1
prunus_persica Prupe.1G393300_v2.0.a1
pyrus_communis pycom08g04700 pycom15g03730 pycom15g03740
rosa_chinensis RchiOBHm_Chr6g0299451
rosa_laevigata RLG00000011430
rosa_multiflora Rmu_sc0017526.1_g000008 Rmu_sc0037301.1_g000003
rosa_roxburghii Rroxscaffold_7G00168670
rosa_rugosa Rorug06G0288400
rosa_samantha Rh6AG400200 Rh6BG408800 Rh6CG414300 Rh6DG401300
rosa_wichuraiana Rw6G035030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 450
Acc36I ACCTGC 1 cut(s) 487
AccII CGCG 1 cut(s) 52
AciI CCGC 3 cut(s) 269, 292, 338
AclWI GGATC 2 cut(s) 252, 650
AcsI RAATTY 4 cut(s) 46, 88, 227, 403
AcuI CTGAAG 1 cut(s) 454
AfaI GTAC 3 cut(s) 477, 566, 697
AgsI TTSAA 4 cut(s) 17, 158, 266, 365
AjnI CCWGG 1 cut(s) 62
AluBI AGCT 5 cut(s) 135, 262, 289, 374, 580
AluI AGCT 5 cut(s) 135, 262, 289, 374, 580
Alw21I GWGCWC 2 cut(s) 137, 185
Alw26I GTCTC 1 cut(s) 607
AlwI GGATC 2 cut(s) 252, 650
Ama87I CYCGRG 2 cut(s) 251, 491
AoxI GGCC 1 cut(s) 65
ApeKI GCWGC 6 cut(s) 286, 340, 343, 434, 502, 629
ApoI RAATTY 4 cut(s) 46, 88, 227, 403
AvaI CYCGRG 2 cut(s) 251, 491
BanII GRGCYC 1 cut(s) 137
BauI CACGAG 1 cut(s) 584
Bbv12I GWGCWC 2 cut(s) 137, 185
BbvI GCAGC 6 cut(s) 298, 352, 355, 446, 489, 641
BccI CCATC 2 cut(s) 383, 657
BcgI CGANNNNNNTGC 2 cut(s) 621, 655
BciT130I CCWGG 1 cut(s) 64
BcoDI GTCTC 1 cut(s) 607
BfaI CTAG 1 cut(s) 653
BfmI CTRYAG 1 cut(s) 627
BfuAI ACCTGC 1 cut(s) 487
BisI GCNGC 6 cut(s) 287, 341, 344, 435, 503, 630
BlsI GCNGC 6 cut(s) 288, 342, 345, 436, 504, 631
Bme1390I CCNGG 1 cut(s) 64
BmeT110I CYCGRG 2 cut(s) 251, 491
BmrFI CCNGG 1 cut(s) 64
BmrI ACTGGG 1 cut(s) 673
BmuI ACTGGG 1 cut(s) 673
BsaXI ACNNNNNCTCC 2 cut(s) 590, 620
Bse118I RCCGGY 2 cut(s) 67, 144
Bse1I ACTGG 1 cut(s) 679
BseBI CCWGG 1 cut(s) 64
BseGI GGATG 1 cut(s) 320
BseMII CTCAG 1 cut(s) 129
BseNI ACTGG 1 cut(s) 679
BseXI GCAGC 6 cut(s) 298, 352, 355, 446, 489, 641
BsgI GTGCAG 3 cut(s) 465, 488, 703
Bsh1236I CGCG 1 cut(s) 52
BshFI GGCC 1 cut(s) 67
BsiHKAI GWGCWC 2 cut(s) 137, 185
BsiHKCI CYCGRG 2 cut(s) 251, 491
BsiSI CCGG 2 cut(s) 68, 145
BsmAI GTCTC 1 cut(s) 607
BsnI GGCC 1 cut(s) 67
BsoBI CYCGRG 2 cut(s) 251, 491
Bsp1286I GDGCHC 2 cut(s) 137, 185
Bsp143I GATC 3 cut(s) 109, 244, 655
BspACI CCGC 3 cut(s) 269, 292, 338
BspANI GGCC 1 cut(s) 67
BspCNI CTCAG 1 cut(s) 130
BspFNI CGCG 1 cut(s) 52
BspHI TCATGA 1 cut(s) 427
BspMAI CTGCAG 1 cut(s) 631
BspMI ACCTGC 1 cut(s) 487
BspPI GGATC 2 cut(s) 252, 650
BsrFI RCCGGY 2 cut(s) 67, 144
BsrI ACTGG 1 cut(s) 679
BssAI RCCGGY 2 cut(s) 67, 144
BssMI GATC 3 cut(s) 109, 244, 655
BssSI CACGAG 1 cut(s) 584
Bst2BI CACGAG 1 cut(s) 584
Bst2UI CCWGG 1 cut(s) 64
BstAPI GCANNNNNTGC 1 cut(s) 511
BstDEI CTNAG 2 cut(s) 138, 295
BstF5I GGATG 1 cut(s) 320
BstFNI CGCG 1 cut(s) 52
BstKTI GATC 3 cut(s) 112, 247, 658
BstMAI GTCTC 1 cut(s) 607
BstMBI GATC 3 cut(s) 109, 244, 655
BstMWI GCNNNNNNNGC 4 cut(s) 141, 440, 511, 629
BstNI CCWGG 1 cut(s) 64
BstSCI CCNGG 1 cut(s) 62
BstSFI CTRYAG 1 cut(s) 627
BstUI CGCG 1 cut(s) 52
BstV1I GCAGC 6 cut(s) 298, 352, 355, 446, 489, 641
BstX2I RGATCY 1 cut(s) 655
BstXI CCANNNNNNTGG 1 cut(s) 70
BstYI RGATCY 1 cut(s) 655
BsuRI GGCC 1 cut(s) 67
BtgZI GCGATG 2 cut(s) 402, 624
BtsCI GGATG 1 cut(s) 320
BtsIMutI CAGTG 1 cut(s) 686
BveI ACCTGC 1 cut(s) 487
CciI TCATGA 1 cut(s) 427
Cfr10I RCCGGY 2 cut(s) 67, 144
CseI GACGC 1 cut(s) 612
Csp6I GTAC 3 cut(s) 476, 565, 696
CviAII CATG 4 cut(s) 166, 377, 428, 568
CviQI GTAC 3 cut(s) 476, 565, 696
DdeI CTNAG 2 cut(s) 138, 295
DpnI GATC 3 cut(s) 111, 246, 657
DpnII GATC 3 cut(s) 109, 244, 655
Ecl136II GAGCTC 1 cut(s) 135
Eco24I GRGCYC 1 cut(s) 137
Eco53kI GAGCTC 1 cut(s) 135
Eco57I CTGAAG 1 cut(s) 454
Eco88I CYCGRG 2 cut(s) 251, 491
EcoICRI GAGCTC 1 cut(s) 135
EcoRI GAATTC 1 cut(s) 46
EcoRII CCWGG 1 cut(s) 62
EcoT38I GRGCYC 1 cut(s) 137
FaeI CATG 4 cut(s) 169, 380, 431, 571
FaiI YATR 6 cut(s) 167, 192, 378, 429, 450, 569
FatI CATG 4 cut(s) 165, 376, 427, 567
FauI CCCGC 1 cut(s) 345
Fnu4HI GCNGC 6 cut(s) 287, 341, 344, 435, 503, 630
FokI GGATG 1 cut(s) 307
FriOI GRGCYC 1 cut(s) 137
Fsp4HI GCNGC 6 cut(s) 287, 341, 344, 435, 503, 630
FspBI CTAG 1 cut(s) 653
GluI GCNGC 6 cut(s) 287, 341, 344, 435, 503, 630
HaeIII GGCC 1 cut(s) 67
HapII CCGG 2 cut(s) 68, 145
HgaI GACGC 1 cut(s) 612
Hin1II CATG 4 cut(s) 169, 380, 431, 571
HindIII AAGCTT 1 cut(s) 578
HinfI GANTC 3 cut(s) 59, 74, 305
HpaII CCGG 2 cut(s) 68, 145
Hpy188I TCNGA 5 cut(s) 139, 187, 310, 473, 691
Hpy188III TCNNGA 7 cut(s) 173, 365, 428, 493, 527, 584, 653
Hpy99I CGWCG 1 cut(s) 670
HpyAV CCTTC 5 cut(s) 200, 492, 565, 583, 669
HpyCH4V TGCA 8 cut(s) 23, 37, 286, 482, 505, 557, 629, 684
HpyF10VI GCNNNNNNNGC 4 cut(s) 141, 440, 511, 629
HpyF3I CTNAG 2 cut(s) 138, 295
Hsp92II CATG 4 cut(s) 169, 380, 431, 571
Kzo9I GATC 3 cut(s) 109, 244, 655
LmnI GCTCC 2 cut(s) 4, 294
Lsp1109I GCAGC 6 cut(s) 298, 352, 355, 446, 489, 641
MaeI CTAG 1 cut(s) 653
MaeIII GTNAC 1 cut(s) 464
MalI GATC 3 cut(s) 111, 246, 657
MboI GATC 3 cut(s) 109, 244, 655
MboII GAAGA 3 cut(s) 90, 425, 542
MfeI CAATTG 1 cut(s) 281
MflI RGATCY 1 cut(s) 655
MhlI GDGCHC 2 cut(s) 137, 185
MluCI AATT 8 cut(s) 32, 46, 88, 227, 281, 299, 325, 403
MlyI GAGTC 1 cut(s) 83
MmeI TCCRAC 2 cut(s) 139, 255
MnlI CCTC 4 cut(s) 22, 229, 247, 592
MseI TTAA 1 cut(s) 353
MspI CCGG 2 cut(s) 68, 145
MspR9I CCNGG 1 cut(s) 64
MunI CAATTG 1 cut(s) 281
MvaI CCWGG 1 cut(s) 64
MvnI CGCG 1 cut(s) 52
MwoI GCNNNNNNNGC 4 cut(s) 141, 440, 511, 629
NdeII GATC 3 cut(s) 109, 244, 655
NlaIII CATG 4 cut(s) 169, 380, 431, 571
NmuCI GTSAC 1 cut(s) 464
PaeR7I CTCGAG 2 cut(s) 251, 491
PagI TCATGA 1 cut(s) 427
PfeI GAWTC 2 cut(s) 59, 305
PkrI GCNGC 6 cut(s) 288, 342, 345, 436, 504, 631
PleI GAGTC 1 cut(s) 82
PpsI GAGTC 1 cut(s) 82
PsiI TTATAA 1 cut(s) 450
Psp124BI GAGCTC 1 cut(s) 137
Psp6I CCWGG 1 cut(s) 62
PspGI CCWGG 1 cut(s) 62
PspXI VCTCGAGB 1 cut(s) 251
PstI CTGCAG 1 cut(s) 631
PsuI RGATCY 1 cut(s) 655
RsaI GTAC 3 cut(s) 477, 566, 697
RsaNI GTAC 3 cut(s) 476, 565, 696
SacI GAGCTC 1 cut(s) 137
SaqAI TTAA 1 cut(s) 353
SatI GCNGC 6 cut(s) 287, 341, 344, 435, 503, 630
Sau3AI GATC 3 cut(s) 109, 244, 655
SchI GAGTC 1 cut(s) 83
ScrFI CCNGG 1 cut(s) 64
SduI GDGCHC 2 cut(s) 137, 185
SetI ASST 8 cut(s) 137, 264, 291, 376, 481, 582, 603, 716
SfcI CTRYAG 1 cut(s) 627
Sfr274I CTCGAG 2 cut(s) 251, 491
SlaI CTCGAG 2 cut(s) 251, 491
SmlI CTYRAG 2 cut(s) 251, 491
SmoI CTYRAG 2 cut(s) 251, 491
Sse9I AATT 8 cut(s) 32, 46, 88, 227, 281, 299, 325, 403
SsiI CCGC 3 cut(s) 269, 292, 338
SspMI CTAG 1 cut(s) 653
SstI GAGCTC 1 cut(s) 137
StyD4I CCNGG 1 cut(s) 62
TaqI TCGA 9 cut(s) 57, 77, 125, 131, 252, 420, 486, 492, 549
TasI AATT 8 cut(s) 32, 46, 88, 227, 281, 299, 325, 403
TatI WGTACW 2 cut(s) 564, 695
TfiI GAWTC 2 cut(s) 59, 305
Tru1I TTAA 1 cut(s) 353
Tru9I TTAA 1 cut(s) 353
TscAI CASTG 1 cut(s) 686
TseFI GTSAC 1 cut(s) 464
TseI GCWGC 6 cut(s) 286, 340, 343, 434, 502, 629
Tsp45I GTSAC 1 cut(s) 464
TspDTI ATGAA 5 cut(s) 101, 309, 444, 584, 651
TspGWI ACGGA 1 cut(s) 550
TspRI CASTG 1 cut(s) 686
XapI RAATTY 4 cut(s) 46, 88, 227, 403
XbaI TCTAGA 1 cut(s) 652
XhoI CTCGAG 2 cut(s) 251, 491
XspI CTAG 1 cut(s) 653
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.