Rh6AG400200

Protein POLAR LOCALIZATION DURING ASYMMETRIC DIVISION AND

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0010398
Physical Location & Seq
Reverse (-)
59738527 .. 59740295
1769 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG400200.1

Sequence Viewer

Length: 798 bp
ATGCAGAAGAAGGAGGAGGAGGAGGTTTCGTCCAAGTCCTTTAAAACCCACGAGACTCGCCGCATTCTCCGAATCGCTGATATTCTACTCGACGACAGAGACGGAGACGGAGACGGAGACTTGTTTGAAATGGACCGACCCCGAAAGACCGACCACCACCTCACCATTATACAGTGCTCCACGCCGCGCCGGATCGTCTCCCGATGGTTCTCCGCTCTCAAGCGTGCCAGACCCAGAAAAGTTAACGCACGGAGCGACAAAAGAGACAACGAAATCGTCAAAGAAAGCAGTCTCCCCCGCACCATGTGTTCCACAAATGGTTTCAACAGCGACGGAGGGCCAGGACGTTGTGGTATGGATTCGAGCTCGTTCAATTTGGGGGTGGCGTGTGGTCTGCTTTGTGTGGTTGCTGCTGGTAAAAATGAACTGAACAAGATGGTGGAATTGCGGACACAGATGGAGCTGATTCTTCAAAATGCCAAACAGGAAATGGGCAGTAAGAATGCACTTACAAACAACCCTAAGCCGGCGGCGGAGTCTAATGAGATTCATTTCGCTTCTTTCTCCACCAATTTCCAACAAGCATCGACCTCTGGTAGCCAGTTTTCTCTTCAATCTGTTGGCGGCCGCGACGAGTGCTCAGATTATTGTGTTGGAAATGAAGGAGAATACGTGGCAGGAATAGATCAACTAGAGGCAGAGCTTCGAGCCGAATTAGAAAGAATGCAGCTCCAATTGGATTCAGAAAGTAATTCATCCATTTCAAAGTCCCGACAGCAGCAGAGGCTAGAGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008356 GO:0009987 GO:0044424 GO:0044464 GO:0051301 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

265

Amino Acids

29.59

Weight (kDa)

5.93

Isoelectric Point (pI)

49.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010398)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31805 AT5G10890 AT5G10890
fragaria_vesca FvH4_2g41090
malus_domestica MD08G1057500.v1.1 MD15G1039900.v1.1
prunus_persica Prupe.1G393300_v2.0.a1
pyrus_communis pycom08g04700 pycom15g03730 pycom15g03740
rosa_chinensis RchiOBHm_Chr6g0299451
rosa_laevigata RLG00000011430
rosa_multiflora Rmu_sc0017526.1_g000008 Rmu_sc0037301.1_g000003
rosa_roxburghii Rroxscaffold_7G00168670
rosa_rugosa Rorug06G0288400
rosa_samantha Rh6AG400200 Rh6BG408800 Rh6CG414300 Rh6DG401300
rosa_wichuraiana Rw6G035030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 215
AccII CGCG 2 cut(s) 187, 630
AciI CCGC 9 cut(s) 61, 185, 213, 298, 448, 530, 533, 624, 628
AclWI GGATC 1 cut(s) 200
AcoI YGGCCR 1 cut(s) 625
AdeI CACNNNGTG 1 cut(s) 306
AfiI CCNNNNNNNGG 1 cut(s) 526
AgsI TTSAA 6 cut(s) 128, 325, 373, 473, 614, 765
AjnI CCWGG 1 cut(s) 340
AluBI AGCT 4 cut(s) 366, 463, 703, 730
AluI AGCT 4 cut(s) 366, 463, 703, 730
Alw21I GWGCWC 3 cut(s) 179, 368, 641
Alw26I GTCTC 8 cut(s) 47, 93, 99, 105, 111, 202, 258, 296
AlwI GGATC 1 cut(s) 200
AoxI GGCC 2 cut(s) 338, 625
ApeKI GCWGC 3 cut(s) 410, 727, 778
AspLEI GCGC 1 cut(s) 189
AspS9I GGNCC 2 cut(s) 133, 338
AsuHPI GGTGA 1 cut(s) 154
AvaII GGWCC 1 cut(s) 133
BanII GRGCYC 1 cut(s) 368
BauI CACGAG 1 cut(s) 50
Bbv12I GWGCWC 3 cut(s) 179, 368, 641
BbvI GCAGC 3 cut(s) 397, 739, 790
BccI CCATC 3 cut(s) 198, 430, 451
BciT130I CCWGG 1 cut(s) 342
BcoDI GTCTC 8 cut(s) 47, 93, 99, 105, 111, 202, 258, 296
BfaI CTAG 2 cut(s) 692, 788
BisI GCNGC 8 cut(s) 61, 185, 411, 531, 625, 628, 728, 779
BlsI GCNGC 8 cut(s) 62, 186, 412, 532, 626, 629, 729, 780
Bme1390I CCNGG 1 cut(s) 342
Bme18I GGWCC 1 cut(s) 133
BmgT120I GGNCC 2 cut(s) 133, 338
BmrFI CCNGG 1 cut(s) 342
BmsI GCATC 1 cut(s) 593
Bpu10I CCTNAGC 1 cut(s) 522
BpuEI CTTGAG 1 cut(s) 203
BsaAI YACGTR 1 cut(s) 673
BsaXI ACNNNNNCTCC 4 cut(s) 14, 44, 657, 687
Bsc4I CCNNNNNNNGG 1 cut(s) 526
Bse118I RCCGGY 1 cut(s) 526
Bse1I ACTGG 1 cut(s) 601
BseBI CCWGG 1 cut(s) 342
BseGI GGATG 1 cut(s) 755
BseLI CCNNNNNNNGG 1 cut(s) 526
BseMII CTCAG 1 cut(s) 654
BseNI ACTGG 1 cut(s) 601
BseRI GAGGAG 3 cut(s) 29, 32, 35
BseX3I CGGCCG 1 cut(s) 625
BseXI GCAGC 3 cut(s) 397, 739, 790
Bsh1236I CGCG 2 cut(s) 187, 630
Bsh1285I CGRYCG 1 cut(s) 628
BshFI GGCC 2 cut(s) 340, 627
BsiEI CGRYCG 1 cut(s) 628
BsiHKAI GWGCWC 3 cut(s) 179, 368, 641
BsiSI CCGG 2 cut(s) 190, 527
BslFI GGGAC 1 cut(s) 754
BslI CCNNNNNNNGG 1 cut(s) 526
BsmAI GTCTC 8 cut(s) 47, 93, 99, 105, 111, 202, 258, 296
BsmBI CGTCTC 4 cut(s) 93, 99, 105, 202
BsmFI GGGAC 1 cut(s) 754
BsmI GAATGC 3 cut(s) 63, 508, 729
BsnI GGCC 2 cut(s) 340, 627
Bsp1286I GDGCHC 3 cut(s) 179, 368, 641
Bsp143I GATC 2 cut(s) 192, 685
BspACI CCGC 9 cut(s) 61, 185, 213, 298, 448, 530, 533, 624, 628
BspANI GGCC 2 cut(s) 340, 627
BspCNI CTCAG 1 cut(s) 653
BspFNI CGCG 2 cut(s) 187, 630
BspPI GGATC 1 cut(s) 200
BsrBI CCGCTC 1 cut(s) 215
BsrFI RCCGGY 1 cut(s) 526
BsrI ACTGG 1 cut(s) 601
BssAI RCCGGY 1 cut(s) 526
BssMI GATC 2 cut(s) 192, 685
BssSI CACGAG 1 cut(s) 50
Bst2BI CACGAG 1 cut(s) 50
Bst2UI CCWGG 1 cut(s) 342
Bst4CI ACNGT 1 cut(s) 174
Bst6I CTCTTC 1 cut(s) 615
BstBAI YACGTR 1 cut(s) 673
BstC8I GCNNGC 2 cut(s) 225, 528
BstDEI CTNAG 2 cut(s) 522, 640
BstF5I GGATG 1 cut(s) 755
BstFNI CGCG 2 cut(s) 187, 630
BstHHI GCGC 1 cut(s) 189
BstKTI GATC 2 cut(s) 195, 688
BstMAI GTCTC 8 cut(s) 47, 93, 99, 105, 111, 202, 258, 296
BstMBI GATC 2 cut(s) 192, 685
BstMCI CGRYCG 1 cut(s) 628
BstMWI GCNNNNNNNGC 2 cut(s) 636, 784
BstNI CCWGG 1 cut(s) 342
BstSCI CCNGG 1 cut(s) 340
BstUI CGCG 2 cut(s) 187, 630
BstV1I GCAGC 3 cut(s) 397, 739, 790
BstZI CGGCCG 1 cut(s) 625
BsuRI GGCC 2 cut(s) 340, 627
BtsCI GGATG 1 cut(s) 755
BtsIMutI CAGTG 1 cut(s) 179
Cac8I GCNNGC 2 cut(s) 225, 528
CciNI GCGGCCGC 1 cut(s) 625
CfoI GCGC 1 cut(s) 189
Cfr10I RCCGGY 1 cut(s) 526
Cfr13I GGNCC 2 cut(s) 133, 338
CviAII CATG 1 cut(s) 304
DdeI CTNAG 2 cut(s) 522, 640
DpnI GATC 2 cut(s) 194, 687
DpnII GATC 2 cut(s) 192, 685
DraI TTTAAA 1 cut(s) 43
DraIII CACNNNGTG 1 cut(s) 306
EaeI YGGCCR 1 cut(s) 625
EagI CGGCCG 1 cut(s) 625
Eam1104I CTCTTC 1 cut(s) 615
EarI CTCTTC 1 cut(s) 615
EciI GGCGGA 1 cut(s) 548
Ecl136II GAGCTC 1 cut(s) 366
EclXI CGGCCG 1 cut(s) 625
Eco24I GRGCYC 1 cut(s) 368
Eco47I GGWCC 1 cut(s) 133
Eco52I CGGCCG 1 cut(s) 625
Eco53kI GAGCTC 1 cut(s) 366
EcoICRI GAGCTC 1 cut(s) 366
EcoRII CCWGG 1 cut(s) 340
EcoT38I GRGCYC 1 cut(s) 368
Esp3I CGTCTC 4 cut(s) 93, 99, 105, 202
FaeI CATG 1 cut(s) 307
FaiI YATR 3 cut(s) 170, 305, 356
FaqI GGGAC 1 cut(s) 754
FatI CATG 1 cut(s) 303
FauI CCCGC 1 cut(s) 305
Fnu4HI GCNGC 8 cut(s) 61, 185, 411, 531, 625, 628, 728, 779
FokI GGATG 1 cut(s) 742
FriOI GRGCYC 1 cut(s) 368
Fsp4HI GCNGC 8 cut(s) 61, 185, 411, 531, 625, 628, 728, 779
FspBI CTAG 2 cut(s) 692, 788
GlaI GCGC 1 cut(s) 188
GluI GCNGC 8 cut(s) 61, 185, 411, 531, 625, 628, 728, 779
HaeIII GGCC 2 cut(s) 340, 627
HapII CCGG 2 cut(s) 190, 527
HhaI GCGC 1 cut(s) 189
Hin1II CATG 1 cut(s) 307
Hin6I GCGC 1 cut(s) 187
HinP1I GCGC 1 cut(s) 187
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HinfI GANTC 7 cut(s) 55, 72, 359, 466, 536, 547, 740
HpaI GTTAAC 1 cut(s) 244
HpaII CCGG 2 cut(s) 190, 527
HphI GGTGA 1 cut(s) 154
Hpy166II GTNNAC 1 cut(s) 244
Hpy188I TCNGA 3 cut(s) 71, 643, 745
Hpy188III TCNNGA 2 cut(s) 201, 771
Hpy8I GTNNAC 1 cut(s) 244
Hpy99I CGWCG 3 cut(s) 95, 335, 635
HpyAV CCTTC 2 cut(s) 4, 656
HpyCH4III ACNGT 1 cut(s) 174
HpyCH4IV ACGT 2 cut(s) 346, 672
HpyCH4V TGCA 3 cut(s) 4, 506, 727
HpyF10VI GCNNNNNNNGC 2 cut(s) 636, 784
HpyF3I CTNAG 2 cut(s) 522, 640
HpySE526I ACGT 2 cut(s) 346, 672
Hsp92II CATG 1 cut(s) 307
HspAI GCGC 1 cut(s) 187
KroI GCCGGC 1 cut(s) 526
KroNI GCCGGC 1 cut(s) 528
KspAI GTTAAC 1 cut(s) 244
Kzo9I GATC 2 cut(s) 192, 685
LmnI GCTCC 4 cut(s) 182, 252, 460, 735
Lsp1109I GCAGC 3 cut(s) 397, 739, 790
LweI GCATC 1 cut(s) 593
MaeI CTAG 2 cut(s) 692, 788
MaeII ACGT 2 cut(s) 346, 672
MalI GATC 2 cut(s) 194, 687
MbiI CCGCTC 1 cut(s) 215
MboI GATC 2 cut(s) 192, 685
MboII GAAGA 3 cut(s) 19, 461, 602
MfeI CAATTG 1 cut(s) 734
MhlI GDGCHC 3 cut(s) 179, 368, 641
MluCI AATT 6 cut(s) 373, 443, 571, 713, 734, 751
MlyI GAGTC 2 cut(s) 49, 545
MmeI TCCRAC 2 cut(s) 601, 634
MnlI CCTC 9 cut(s) 7, 10, 13, 16, 170, 329, 601, 688, 777
MroNI GCCGGC 1 cut(s) 526
MseI TTAA 2 cut(s) 42, 243
MspI CCGG 2 cut(s) 190, 527
MspR9I CCNGG 1 cut(s) 342
MunI CAATTG 1 cut(s) 734
Mva1269I GAATGC 3 cut(s) 63, 508, 729
MvaI CCWGG 1 cut(s) 342
MvnI CGCG 2 cut(s) 187, 630
MwoI GCNNNNNNNGC 2 cut(s) 636, 784
NaeI GCCGGC 1 cut(s) 528
NdeII GATC 2 cut(s) 192, 685
NgoMIV GCCGGC 1 cut(s) 526
NlaIII CATG 1 cut(s) 307
NotI GCGGCCGC 1 cut(s) 625
PcsI WCGNNNNNNNCGW 1 cut(s) 252
PctI GAATGC 3 cut(s) 63, 508, 729
PdiI GCCGGC 1 cut(s) 528
PfeI GAWTC 5 cut(s) 72, 359, 466, 547, 740
PkrI GCNGC 8 cut(s) 62, 186, 412, 532, 626, 629, 729, 780
PleI GAGTC 2 cut(s) 49, 544
PpsI GAGTC 2 cut(s) 49, 544
Ppu21I YACGTR 1 cut(s) 673
Psp124BI GAGCTC 1 cut(s) 368
Psp6I CCWGG 1 cut(s) 340
PspGI CCWGG 1 cut(s) 340
PspPI GGNCC 2 cut(s) 133, 338
SacI GAGCTC 1 cut(s) 368
SaqAI TTAA 2 cut(s) 42, 243
SatI GCNGC 8 cut(s) 61, 185, 411, 531, 625, 628, 728, 779
Sau3AI GATC 2 cut(s) 192, 685
Sau96I GGNCC 2 cut(s) 133, 338
SchI GAGTC 2 cut(s) 49, 545
ScrFI CCNGG 1 cut(s) 342
SduI GDGCHC 3 cut(s) 179, 368, 641
SetI ASST 9 cut(s) 27, 162, 349, 368, 465, 593, 675, 705, 732
SfaNI GCATC 1 cut(s) 593
SinI GGWCC 1 cut(s) 133
SmlI CTYRAG 1 cut(s) 218
SmoI CTYRAG 1 cut(s) 218
Sse9I AATT 6 cut(s) 373, 443, 571, 713, 734, 751
SsiI CCGC 9 cut(s) 61, 185, 213, 298, 448, 530, 533, 624, 628
SspMI CTAG 2 cut(s) 692, 788
SstI GAGCTC 1 cut(s) 368
StyD4I CCNGG 1 cut(s) 340
TaaI ACNGT 1 cut(s) 174
TaiI ACGT 2 cut(s) 349, 675
TaqI TCGA 4 cut(s) 90, 362, 587, 706
TaqII GACCGA 2 cut(s) 150, 164
TasI AATT 6 cut(s) 373, 443, 571, 713, 734, 751
TauI GCSGC 5 cut(s) 63, 187, 533, 627, 630
TfiI GAWTC 5 cut(s) 72, 359, 466, 547, 740
Tru1I TTAA 2 cut(s) 42, 243
Tru9I TTAA 2 cut(s) 42, 243
TscAI CASTG 1 cut(s) 179
TseI GCWGC 3 cut(s) 410, 727, 778
TspDTI ATGAA 4 cut(s) 438, 539, 675, 744
TspGWI ACGGA 5 cut(s) 117, 123, 129, 265, 348
TspRI CASTG 1 cut(s) 179
VpaK11BI GGWCC 1 cut(s) 133
XcmI CCANNNNNNNNNTGG 1 cut(s) 487
XspI CTAG 2 cut(s) 692, 788
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.