RchiOBHm_Chr6g0299451

Protein POLAR LOCALIZATION DURING ASYMMETRIC DIVISION AND

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0010398
Physical Location & Seq
Reverse (-)
60514054 .. 60515721
1668 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26889

Sequence Viewer

Length: 1086 bp
ATGCAGAAGGAGGAGGAGGAGGAGGAGGTTTCGTCCAAGTCCTTTAAAACCCACGAGACTCGCCGCATTCTCCGAATCGCTGATATTCTACTCGACGACAGAGACGGAGACGGAGACTTGTTTGAAATGGACCGACCCCGAAAGACCGACCACCACCTCACCATTATACAGTGCTCCACGCCGCGCCGGATCGTCTCCCGATGGTTCTCCGCTCTCAAGCGTGCCAGACCCAGAAAAGTTAACGCACGGAGCGACAACAGAGACAACGAAATCGTCAAAGAAAGCAATCTCGCCCGCACCATGTGTTCCACAAATGGTTTCAACAGCGACGGAGGGCCAGGACGTTGTGGTATGGATTCGAGCTCGTTCAATTTGGGGGTGGCGTGTGGTCTGCTTTGTGTGGTTGCTGCTGGTAAAAATGAACTGAACAAGATGGTGGAATTGCGGACACAGATGGAGCTGATTCTTCAAAATGCCAAACAGGAAATGGGCAGTAAGAATGCACTTATAAACGACCCTAAGCCGGCGGCGGAGTCTAATGAGATTCATTTCGCTTCTTTCTCCACCAATTTCCAACAAGCATCGACCTCTGGTAGCCAGTTTTCTCTTCAATCTGTTGGCGGCCGCGACGAGTGCTCAGATTATTGTGTTGGAAATGAAGGAGAAGGAGGAGACGAATACGTGGCAGGAATAGATCAACTAGAGGCGGAGCTTCGAGCCGAATTAGAAAGAATGCAGCTCCAATTGGATTCAGAAAGTAATTCATCCATTTCAAAGTCCCCACAGCAGCAGAGGCTAGAGGGTATGGGAGGCATTGGTTCAAATCGTCGTGAAGGGGACTCAGCATCAACGGATTACAGTGATCATGAAATGCTCTGGGGCTGTGGATTTGCTCCGCTTGAACTTGAGAGAAAATTGCATCTAGTGCTGGAAGCGAGACAAGAAGAGCGGATAAAAGAACTGGAAGATGCTTTAGAATGTGCAGAGCAGAAGCTTGAGGAGAAAGAAAGAGAGGTGTCTTGGTGGAGAAACGCTGCAATACTTATGTCGGGCCATGATCCAGAACCTTCATATTCGAATGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008356 GO:0009987 GO:0044424 GO:0044464 GO:0051301 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

361

Amino Acids

40.4

Weight (kDa)

4.91

Isoelectric Point (pI)

50.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010398)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31805 AT5G10890 AT5G10890
fragaria_vesca FvH4_2g41090
malus_domestica MD08G1057500.v1.1 MD15G1039900.v1.1
prunus_persica Prupe.1G393300_v2.0.a1
pyrus_communis pycom08g04700 pycom15g03730 pycom15g03740
rosa_chinensis RchiOBHm_Chr6g0299451
rosa_laevigata RLG00000011430
rosa_multiflora Rmu_sc0017526.1_g000008 Rmu_sc0037301.1_g000003
rosa_roxburghii Rroxscaffold_7G00168670
rosa_rugosa Rorug06G0288400
rosa_samantha Rh6AG400200 Rh6BG408800 Rh6CG414300 Rh6DG401300
rosa_wichuraiana Rw6G035030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 509
AccBSI CCGCTC 2 cut(s) 212, 949
AccII CGCG 2 cut(s) 184, 627
AclWI GGATC 2 cut(s) 197, 1052
AcoI YGGCCR 1 cut(s) 622
AdeI CACNNNGTG 1 cut(s) 303
AfiI CCNNNNNNNGG 1 cut(s) 523
AgsI TTSAA 8 cut(s) 125, 322, 370, 470, 611, 774, 822, 902
AjnI CCWGG 1 cut(s) 337
AluBI AGCT 5 cut(s) 363, 460, 712, 739, 994
AluI AGCT 5 cut(s) 363, 460, 712, 739, 994
Alw21I GWGCWC 3 cut(s) 176, 365, 638
Alw26I GTCTC 8 cut(s) 50, 96, 102, 108, 199, 255, 666, 931
AlwI GGATC 2 cut(s) 197, 1052
AoxI GGCC 3 cut(s) 335, 622, 1051
ApeKI GCWGC 4 cut(s) 407, 736, 787, 1034
AspLEI GCGC 1 cut(s) 186
AspS9I GGNCC 3 cut(s) 130, 335, 1051
AsuHPI GGTGA 1 cut(s) 151
AsuII TTCGAA 1 cut(s) 1076
AvaII GGWCC 1 cut(s) 130
BanII GRGCYC 1 cut(s) 365
BauI CACGAG 1 cut(s) 53
Bbv12I GWGCWC 3 cut(s) 176, 365, 638
BbvI GCAGC 4 cut(s) 394, 748, 799, 1021
BccI CCATC 3 cut(s) 195, 427, 448
BciT130I CCWGG 1 cut(s) 339
BclI TGATCA 1 cut(s) 862
BcoDI GTCTC 8 cut(s) 50, 96, 102, 108, 199, 255, 666, 931
BfaI CTAG 3 cut(s) 701, 797, 923
BisI GCNGC 9 cut(s) 64, 182, 408, 528, 622, 625, 737, 788, 1035
BlsI GCNGC 9 cut(s) 65, 183, 409, 529, 623, 626, 738, 789, 1036
Bme1390I CCNGG 1 cut(s) 339
Bme18I GGWCC 1 cut(s) 130
BmgT120I GGNCC 3 cut(s) 130, 335, 1051
BmrFI CCNGG 1 cut(s) 339
BmsI GCATC 4 cut(s) 590, 854, 928, 958
Bpu10I CCTNAGC 1 cut(s) 519
Bpu14I TTCGAA 1 cut(s) 1076
BpuEI CTTGAG 3 cut(s) 200, 926, 1016
BsaAI YACGTR 1 cut(s) 682
BsaXI ACNNNNNCTCC 2 cut(s) 17, 47
Bsc4I CCNNNNNNNGG 1 cut(s) 523
Bse118I RCCGGY 1 cut(s) 523
Bse1I ACTGG 2 cut(s) 598, 966
BseBI CCWGG 1 cut(s) 339
BseGI GGATG 1 cut(s) 764
BseLI CCNNNNNNNGG 1 cut(s) 523
BseMII CTCAG 2 cut(s) 651, 855
BseNI ACTGG 2 cut(s) 598, 966
BseRI GAGGAG 7 cut(s) 26, 29, 32, 35, 38, 684, 1013
BseX3I CGGCCG 1 cut(s) 622
BseXI GCAGC 4 cut(s) 394, 748, 799, 1021
BsgI GTGCAG 1 cut(s) 1002
Bsh1236I CGCG 2 cut(s) 184, 627
Bsh1285I CGRYCG 1 cut(s) 625
BshFI GGCC 3 cut(s) 337, 624, 1053
BsiEI CGRYCG 1 cut(s) 625
BsiHKAI GWGCWC 3 cut(s) 176, 365, 638
BsiSI CCGG 2 cut(s) 187, 524
BslFI GGGAC 2 cut(s) 763, 851
BslI CCNNNNNNNGG 1 cut(s) 523
BsmAI GTCTC 8 cut(s) 50, 96, 102, 108, 199, 255, 666, 931
BsmBI CGTCTC 4 cut(s) 96, 102, 199, 666
BsmFI GGGAC 2 cut(s) 763, 851
BsmI GAATGC 3 cut(s) 66, 505, 738
BsnI GGCC 3 cut(s) 337, 624, 1053
Bsp119I TTCGAA 1 cut(s) 1076
Bsp1286I GDGCHC 3 cut(s) 176, 365, 638
Bsp143I GATC 4 cut(s) 189, 694, 862, 1057
BspANI GGCC 3 cut(s) 337, 624, 1053
BspCNI CTCAG 2 cut(s) 650, 854
BspFNI CGCG 2 cut(s) 184, 627
BspHI TCATGA 1 cut(s) 865
BspPI GGATC 2 cut(s) 197, 1052
BspQI GCTCTTC 1 cut(s) 939
BspT104I TTCGAA 1 cut(s) 1076
BsrBI CCGCTC 2 cut(s) 212, 949
BsrFI RCCGGY 1 cut(s) 523
BsrI ACTGG 2 cut(s) 598, 966
BssAI RCCGGY 1 cut(s) 523
BssMI GATC 4 cut(s) 189, 694, 862, 1057
BssSI CACGAG 1 cut(s) 53
Bst2BI CACGAG 1 cut(s) 53
Bst2UI CCWGG 1 cut(s) 339
Bst4CI ACNGT 2 cut(s) 171, 860
Bst6I CTCTTC 2 cut(s) 612, 939
BstAPI GCANNNNNTGC 1 cut(s) 925
BstBAI YACGTR 1 cut(s) 682
BstBI TTCGAA 1 cut(s) 1076
BstC8I GCNNGC 3 cut(s) 222, 295, 525
BstDEI CTNAG 3 cut(s) 519, 637, 841
BstF5I GGATG 1 cut(s) 764
BstFNI CGCG 2 cut(s) 184, 627
BstHHI GCGC 1 cut(s) 186
BstKTI GATC 4 cut(s) 192, 697, 865, 1060
BstMAI GTCTC 8 cut(s) 50, 96, 102, 108, 199, 255, 666, 931
BstMBI GATC 4 cut(s) 189, 694, 862, 1057
BstMCI CGRYCG 1 cut(s) 625
BstMWI GCNNNNNNNGC 3 cut(s) 633, 793, 925
BstNI CCWGG 1 cut(s) 339
BstSCI CCNGG 1 cut(s) 337
BstUI CGCG 2 cut(s) 184, 627
BstV1I GCAGC 4 cut(s) 394, 748, 799, 1021
BstZI CGGCCG 1 cut(s) 622
BsuRI GGCC 3 cut(s) 337, 624, 1053
BtsCI GGATG 1 cut(s) 764
BtsIMutI CAGTG 2 cut(s) 176, 865
Cac8I GCNNGC 3 cut(s) 222, 295, 525
CciI TCATGA 1 cut(s) 865
CciNI GCGGCCGC 1 cut(s) 622
CfoI GCGC 1 cut(s) 186
Cfr10I RCCGGY 1 cut(s) 523
Cfr13I GGNCC 3 cut(s) 130, 335, 1051
CviAII CATG 3 cut(s) 301, 866, 1055
DdeI CTNAG 3 cut(s) 519, 637, 841
DpnI GATC 4 cut(s) 191, 696, 864, 1059
DpnII GATC 4 cut(s) 189, 694, 862, 1057
DraI TTTAAA 1 cut(s) 46
DraIII CACNNNGTG 1 cut(s) 303
EaeI YGGCCR 1 cut(s) 622
EagI CGGCCG 1 cut(s) 622
Eam1104I CTCTTC 2 cut(s) 612, 939
EarI CTCTTC 2 cut(s) 612, 939
EciI GGCGGA 2 cut(s) 545, 722
Ecl136II GAGCTC 1 cut(s) 363
EclXI CGGCCG 1 cut(s) 622
Eco24I GRGCYC 1 cut(s) 365
Eco47I GGWCC 1 cut(s) 130
Eco52I CGGCCG 1 cut(s) 622
Eco53kI GAGCTC 1 cut(s) 363
EcoICRI GAGCTC 1 cut(s) 363
EcoRII CCWGG 1 cut(s) 337
EcoT38I GRGCYC 1 cut(s) 365
Esp3I CGTCTC 4 cut(s) 96, 102, 199, 666
FaeI CATG 3 cut(s) 304, 869, 1058
FaiI YATR 9 cut(s) 167, 302, 353, 509, 806, 867, 1046, 1056, 1072
FaqI GGGAC 2 cut(s) 763, 851
FatI CATG 3 cut(s) 300, 865, 1054
FauI CCCGC 1 cut(s) 302
FbaI TGATCA 1 cut(s) 862
Fnu4HI GCNGC 9 cut(s) 64, 182, 408, 528, 622, 625, 737, 788, 1035
FokI GGATG 1 cut(s) 751
FriOI GRGCYC 1 cut(s) 365
Fsp4HI GCNGC 9 cut(s) 64, 182, 408, 528, 622, 625, 737, 788, 1035
FspBI CTAG 3 cut(s) 701, 797, 923
GlaI GCGC 1 cut(s) 185
GluI GCNGC 9 cut(s) 64, 182, 408, 528, 622, 625, 737, 788, 1035
HaeIII GGCC 3 cut(s) 337, 624, 1053
HapII CCGG 2 cut(s) 187, 524
HhaI GCGC 1 cut(s) 186
Hin1II CATG 3 cut(s) 304, 869, 1058
Hin6I GCGC 1 cut(s) 184
HinP1I GCGC 1 cut(s) 184
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HindIII AAGCTT 1 cut(s) 992
HinfI GANTC 8 cut(s) 58, 75, 356, 463, 533, 544, 749, 839
HpaI GTTAAC 1 cut(s) 241
HpaII CCGG 2 cut(s) 187, 524
HphI GGTGA 1 cut(s) 151
Hpy166II GTNNAC 1 cut(s) 241
Hpy188I TCNGA 3 cut(s) 74, 640, 754
Hpy188III TCNNGA 4 cut(s) 198, 830, 866, 1061
Hpy8I GTNNAC 1 cut(s) 241
Hpy99I CGWCG 4 cut(s) 98, 332, 632, 831
HpyAV CCTTC 4 cut(s) 653, 659, 827, 1077
HpyCH4III ACNGT 2 cut(s) 171, 860
HpyCH4IV ACGT 2 cut(s) 343, 681
HpyCH4V TGCA 6 cut(s) 4, 503, 736, 919, 983, 1037
HpyF10VI GCNNNNNNNGC 3 cut(s) 633, 793, 925
HpyF3I CTNAG 3 cut(s) 519, 637, 841
HpySE526I ACGT 2 cut(s) 343, 681
Hsp92II CATG 3 cut(s) 304, 869, 1058
HspAI GCGC 1 cut(s) 184
KroI GCCGGC 1 cut(s) 523
KroNI GCCGGC 1 cut(s) 525
Ksp22I TGATCA 1 cut(s) 862
KspAI GTTAAC 1 cut(s) 241
Kzo9I GATC 4 cut(s) 189, 694, 862, 1057
LguI GCTCTTC 1 cut(s) 939
LmnI GCTCC 6 cut(s) 179, 249, 457, 709, 744, 898
Lsp1109I GCAGC 4 cut(s) 394, 748, 799, 1021
LweI GCATC 4 cut(s) 590, 854, 928, 958
MaeI CTAG 3 cut(s) 701, 797, 923
MaeII ACGT 2 cut(s) 343, 681
MalI GATC 4 cut(s) 191, 696, 864, 1059
MbiI CCGCTC 2 cut(s) 212, 949
MboI GATC 4 cut(s) 189, 694, 862, 1057
MboII GAAGA 4 cut(s) 458, 599, 956, 977
MfeI CAATTG 1 cut(s) 743
MhlI GDGCHC 3 cut(s) 176, 365, 638
MluCI AATT 7 cut(s) 370, 440, 568, 722, 743, 760, 914
MlyI GAGTC 3 cut(s) 52, 542, 833
MmeI TCCRAC 2 cut(s) 598, 631
MroNI GCCGGC 1 cut(s) 523
MseI TTAA 2 cut(s) 45, 240
MspI CCGG 2 cut(s) 187, 524
MspR9I CCNGG 1 cut(s) 339
MunI CAATTG 1 cut(s) 743
Mva1269I GAATGC 3 cut(s) 66, 505, 738
MvaI CCWGG 1 cut(s) 339
MvnI CGCG 2 cut(s) 184, 627
MwoI GCNNNNNNNGC 3 cut(s) 633, 793, 925
NaeI GCCGGC 1 cut(s) 525
NdeII GATC 4 cut(s) 189, 694, 862, 1057
NgoMIV GCCGGC 1 cut(s) 523
NlaIII CATG 3 cut(s) 304, 869, 1058
NotI GCGGCCGC 1 cut(s) 622
NspV TTCGAA 1 cut(s) 1076
PagI TCATGA 1 cut(s) 865
PciSI GCTCTTC 1 cut(s) 939
PcsI WCGNNNNNNNCGW 1 cut(s) 249
PctI GAATGC 3 cut(s) 66, 505, 738
PdiI GCCGGC 1 cut(s) 525
PfeI GAWTC 5 cut(s) 75, 356, 463, 544, 749
PkrI GCNGC 9 cut(s) 65, 183, 409, 529, 623, 626, 738, 789, 1036
PleI GAGTC 3 cut(s) 52, 541, 833
PpsI GAGTC 3 cut(s) 52, 541, 833
Ppu21I YACGTR 1 cut(s) 682
PsiI TTATAA 1 cut(s) 509
Psp124BI GAGCTC 1 cut(s) 365
Psp6I CCWGG 1 cut(s) 337
PspGI CCWGG 1 cut(s) 337
PspPI GGNCC 3 cut(s) 130, 335, 1051
SacI GAGCTC 1 cut(s) 365
SapI GCTCTTC 1 cut(s) 939
SaqAI TTAA 2 cut(s) 45, 240
SatI GCNGC 9 cut(s) 64, 182, 408, 528, 622, 625, 737, 788, 1035
Sau3AI GATC 4 cut(s) 189, 694, 862, 1057
Sau96I GGNCC 3 cut(s) 130, 335, 1051
SchI GAGTC 3 cut(s) 52, 542, 833
ScrFI CCNGG 1 cut(s) 339
SduI GDGCHC 3 cut(s) 176, 365, 638
SfaNI GCATC 4 cut(s) 590, 854, 928, 958
SfuI TTCGAA 1 cut(s) 1076
SinI GGWCC 1 cut(s) 130
SmlI CTYRAG 3 cut(s) 215, 905, 995
SmoI CTYRAG 3 cut(s) 215, 905, 995
Sse9I AATT 7 cut(s) 370, 440, 568, 722, 743, 760, 914
SspMI CTAG 3 cut(s) 701, 797, 923
SstI GAGCTC 1 cut(s) 365
StyD4I CCNGG 1 cut(s) 337
TaaI ACNGT 2 cut(s) 171, 860
TaiI ACGT 2 cut(s) 346, 684
TaqI TCGA 5 cut(s) 93, 359, 584, 715, 1076
TaqII GACCGA 2 cut(s) 147, 161
TasI AATT 7 cut(s) 370, 440, 568, 722, 743, 760, 914
TauI GCSGC 5 cut(s) 66, 184, 530, 624, 627
TfiI GAWTC 5 cut(s) 75, 356, 463, 544, 749
Tru1I TTAA 2 cut(s) 45, 240
Tru9I TTAA 2 cut(s) 45, 240
TscAI CASTG 2 cut(s) 176, 865
TseI GCWGC 4 cut(s) 407, 736, 787, 1034
TspDTI ATGAA 6 cut(s) 435, 536, 672, 753, 882, 1059
TspGWI ACGGA 5 cut(s) 120, 126, 262, 345, 866
TspRI CASTG 2 cut(s) 176, 865
VpaK11BI GGWCC 1 cut(s) 130
XcmI CCANNNNNNNNNTGG 1 cut(s) 484
XspI CTAG 3 cut(s) 701, 797, 923
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.