Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005037

Physical Location & Seq

Genomic Coordinates Reverse (-)

6689108 .. 6690040

Gene Structure 933 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G19790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGAACATCAAACAACTCCAAAGCAGAAAACTAAGGAGAAGAGCAAAGGCAACAAGACTAAGTTTGTGGGAGTTAGGCAAAGGCCTTCAGGAAAATGGGTGGCAGAGATCAAAGACACTACACAAAAGATACGGATGTGGCTCGGAACCTTTGAAACCGCAGAAGAAGCCGCTCGAGCCTACGATGAAGCTGCATGTCTCTTACGTGGCTCCAATACTCGCACCAATTTCGCAAACCATTTTCCTAACAACTCACAACTATCTTTGAAGATCAGAAATCTTCTTCACCAGAAGCAGAGCATGAAGCAGCAGCAACAACAACAACACAAACCAGTTTCTTCTTTAACGGATTGCAACATCAACTACATCTCGACTGCTACTAGTCTCACCACAACCACCACCACCACCACTACCACGGCCATACCGCTCAATAATGTGTACCGACCAGATTCATCGGTCATTGGGCAACCAGAAACCGAGGGTCTCCAGCTTCCTTATTCGTGGCCCCTTGTCTCTGGATTCAACCATCAGATTCCATTGGCTCAGGCAGGGGGAGAAACACATGGACATCTCAACGATCACTACTCAACCGATCAACATTTGGGTCTTGCAGAAATTGAAAGACAGATATCTGCGTCCCTATATGCAATGAATGGAGCTAACAGTTACTATGACAACATGAATGCAGAATATGCAATTTTCGATCCTACCGATCCCATTTGGGATCTCCCTTCACTCTCCCAACTCTTCTGCCCTACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009791 GO:0009877 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0035864 GO:0035865 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048519 GO:0048523 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0080090 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

253

Amino Acids

28.37

Weight (kDa)

7.12

Isoelectric Point (pI)

43.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	20 - 70	2.1e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19790
fragaria_vesca	FvH4_6g02490
malus_domestica	MD03G1004500.v1.1 MD11G1005200.v1.1 MD12G1004600.v1.1 MD14G1003100.v1.1
prunus_persica	Prupe.6G004400_v2.0.a1 Prupe.7G004900_v2.0.a1
pyrus_communis	pycom03g00470 pycom11g00430 pycom14g00100
rosa_chinensis	RchiOBHm_Chr3g0450351 RchiOBHm_Chr5g0083271
rosa_laevigata	RLG00000025736 RLG00000037025
rosa_multiflora	Rmu_sc0000330.1_g000004 Rmu_sc0011792.1_g000007
rosa_roxburghii	Rroxscaffold_1G00001220 Rroxscaffold_6G00428080
rosa_rugosa	Rorug02G0627100.1 Rorug05G0483900
rosa_samantha	Rh3AG027500 Rh3BG028200 Rh3CG026900 Rh3DG028100 Rh5BG560600 Rh5CG583300 Rh5DG569900
rosa_wichuraiana	Rw3G002140 Rw5G049960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	173, 427
AciI	CCGC	3 cut(s)	159, 171, 425
AclWI	GGATC	3 cut(s)	698, 707, 732
AcoI	YGGCCR	1 cut(s)	417
AcuI	CTGAAG	1 cut(s)	72
AfaI	GTAC	1 cut(s)	440
AgsI	TTSAA	4 cut(s)	155, 268, 523, 620
AhlI	ACTAGT	1 cut(s)	380
AluBI	AGCT	3 cut(s)	191, 490, 659
AluI	AGCT	3 cut(s)	191, 490, 659
Alw26I	GTCTC	4 cut(s)	203, 389, 488, 517
AlwI	GGATC	3 cut(s)	698, 707, 732
Ama87I	CYCGRG	1 cut(s)	174
AoxI	GGCC	3 cut(s)	83, 417, 503
ApeKI	GCWGC	3 cut(s)	191, 307, 310
AspS9I	GGNCC	1 cut(s)	504
AsuHPI	GGTGA	2 cut(s)	278, 379
AvaI	CYCGRG	1 cut(s)	174
BaeI	ACNNNNGTAYC	2 cut(s)	122, 155
BbvI	GCAGC	3 cut(s)	178, 319, 322
BccI	CCATC	1 cut(s)	534
BceAI	ACGGC	1 cut(s)	432
BcgI	CGANNNNNNTGC	4 cut(s)	173, 207, 211, 245
BcoDI	GTCTC	4 cut(s)	203, 389, 488, 517
BcuI	ACTAGT	1 cut(s)	380
BfaI	CTAG	1 cut(s)	381
BisI	GCNGC	4 cut(s)	171, 192, 308, 311
BlsI	GCNGC	4 cut(s)	172, 193, 309, 312
BmeT110I	CYCGRG	1 cut(s)	174
BmgT120I	GGNCC	1 cut(s)	504
BmiI	GGNNCC	3 cut(s)	148, 211, 506
BpmI	CTGGAG	1 cut(s)	470
Bpu10I	CCTNAGC	1 cut(s)	543
BsaAI	YACGTR	2 cut(s)	206, 759
BsaI	GGTCTC	1 cut(s)	488
BsaJI	CCNNGG	2 cut(s)	414, 477
Bse1I	ACTGG	1 cut(s)	332
Bse3DI	GCAATG	1 cut(s)	654
BseDI	CCNNGG	2 cut(s)	414, 477
BseGI	GGATG	1 cut(s)	141
BseMI	GCAATG	1 cut(s)	654
BseMII	CTCAG	1 cut(s)	557
BseNI	ACTGG	1 cut(s)	332
BseXI	GCAGC	3 cut(s)	178, 319, 322
BshFI	GGCC	3 cut(s)	85, 419, 505
BsiHKCI	CYCGRG	1 cut(s)	174
BslFI	GGGAC	1 cut(s)	622
BsmAI	GTCTC	4 cut(s)	203, 389, 488, 517
BsmFI	GGGAC	1 cut(s)	622
BsmI	GAATGC	1 cut(s)	688
BsnI	GGCC	3 cut(s)	85, 419, 505
Bso31I	GGTCTC	1 cut(s)	488
BsoBI	CYCGRG	1 cut(s)	174
Bsp143I	GATC	7 cut(s)	108, 270, 577, 592, 703, 712, 724
BspACI	CCGC	3 cut(s)	159, 171, 425
BspANI	GGCC	3 cut(s)	85, 419, 505
BspCNI	CTCAG	1 cut(s)	556
BspLI	GGNNCC	3 cut(s)	148, 211, 506
BspPI	GGATC	3 cut(s)	698, 707, 732
BspQI	GCTCTTC	1 cut(s)	35
BspTNI	GGTCTC	1 cut(s)	488
BsrBI	CCGCTC	2 cut(s)	173, 427
BsrDI	GCAATG	1 cut(s)	654
BsrI	ACTGG	1 cut(s)	332
BssECI	CCNNGG	2 cut(s)	414, 477
BssMI	GATC	7 cut(s)	108, 270, 577, 592, 703, 712, 724
Bst4CI	ACNGT	1 cut(s)	665
Bst6I	CTCTTC	2 cut(s)	35, 752
BstAPI	GCANNNNNTGC	1 cut(s)	692
BstBAI	YACGTR	2 cut(s)	206, 759
BstDEI	CTNAG	3 cut(s)	33, 60, 543
BstDSI	CCRYGG	1 cut(s)	414
BstF5I	GGATG	1 cut(s)	141
BstKTI	GATC	7 cut(s)	111, 273, 580, 595, 706, 715, 727
BstMAI	GTCTC	4 cut(s)	203, 389, 488, 517
BstMBI	GATC	7 cut(s)	108, 270, 577, 592, 703, 712, 724
BstMWI	GCNNNNNNNGC	3 cut(s)	167, 176, 692
BstNSI	RCATGY	1 cut(s)	198
BstV1I	GCAGC	3 cut(s)	178, 319, 322
BstX2I	RGATCY	1 cut(s)	724
BstYI	RGATCY	1 cut(s)	724
BsuRI	GGCC	3 cut(s)	85, 419, 505
BtgI	CCRYGG	1 cut(s)	414
BtsCI	GGATG	1 cut(s)	141
Cfr13I	GGNCC	1 cut(s)	504
CseI	GACGC	1 cut(s)	624
Csp6I	GTAC	1 cut(s)	439
CviAII	CATG	4 cut(s)	195, 301, 563, 679
CviQI	GTAC	1 cut(s)	439
DdeI	CTNAG	3 cut(s)	33, 60, 543
DpnI	GATC	7 cut(s)	110, 272, 579, 594, 705, 714, 726
DpnII	GATC	7 cut(s)	108, 270, 577, 592, 703, 712, 724
EaeI	YGGCCR	1 cut(s)	417
Eam1104I	CTCTTC	2 cut(s)	35, 752
EarI	CTCTTC	2 cut(s)	35, 752
Eco147I	AGGCCT	1 cut(s)	85
Eco31I	GGTCTC	1 cut(s)	488
Eco32I	GATATC	1 cut(s)	630
Eco57I	CTGAAG	1 cut(s)	72
Eco88I	CYCGRG	1 cut(s)	174
EcoRV	GATATC	1 cut(s)	630
FaeI	CATG	4 cut(s)	198, 304, 566, 682
FaiI	YATR	9 cut(s)	196, 302, 422, 564, 643, 645, 672, 680, 693
FaqI	GGGAC	1 cut(s)	622
FatI	CATG	4 cut(s)	194, 300, 562, 678
Fnu4HI	GCNGC	4 cut(s)	171, 192, 308, 311
FokI	GGATG	1 cut(s)	148
Fsp4HI	GCNGC	4 cut(s)	171, 192, 308, 311
FspBI	CTAG	1 cut(s)	381
GluI	GCNGC	4 cut(s)	171, 192, 308, 311
GsuI	CTGGAG	1 cut(s)	470
HaeIII	GGCC	3 cut(s)	85, 419, 505
HgaI	GACGC	1 cut(s)	624
Hin1II	CATG	4 cut(s)	198, 304, 566, 682
HinfI	GANTC	3 cut(s)	449, 519, 532
HphI	GGTGA	2 cut(s)	278, 379
Hpy166II	GTNNAC	1 cut(s)	439
Hpy188I	TCNGA	3 cut(s)	146, 275, 531
Hpy188III	TCNNGA	3 cut(s)	90, 370, 516
Hpy8I	GTNNAC	1 cut(s)	439
HpyAV	CCTTC	2 cut(s)	96, 741
HpyCH4III	ACNGT	1 cut(s)	665
HpyCH4IV	ACGT	2 cut(s)	205, 758
HpyCH4V	TGCA	6 cut(s)	194, 354, 611, 647, 686, 695
HpyF10VI	GCNNNNNNNGC	3 cut(s)	167, 176, 692
HpyF3I	CTNAG	3 cut(s)	33, 60, 543
HpySE526I	ACGT	2 cut(s)	205, 758
Hsp92II	CATG	4 cut(s)	198, 304, 566, 682
Kzo9I	GATC	7 cut(s)	108, 270, 577, 592, 703, 712, 724
LguI	GCTCTTC	1 cut(s)	35
LmnI	GCTCC	2 cut(s)	215, 656
LpnPI	CCDG	9 cut(s)	75, 302, 345, 459, 483, 500, 501, 530, 534
Lsp1109I	GCAGC	3 cut(s)	178, 319, 322
MaeI	CTAG	1 cut(s)	381
MaeII	ACGT	2 cut(s)	205, 758
MaeIII	GTNAC	1 cut(s)	665
MalI	GATC	7 cut(s)	110, 272, 579, 594, 705, 714, 726
MbiI	CCGCTC	2 cut(s)	173, 427
MboI	GATC	7 cut(s)	108, 270, 577, 592, 703, 712, 724
MboII	GAAGA	7 cut(s)	52, 176, 272, 275, 280, 330, 739
MflI	RGATCY	1 cut(s)	724
MluCI	AATT	3 cut(s)	226, 615, 696
MnlI	CCTC	1 cut(s)	472
MseI	TTAA	1 cut(s)	344
Mva1269I	GAATGC	1 cut(s)	688
MwoI	GCNNNNNNNGC	3 cut(s)	167, 176, 692
NdeII	GATC	7 cut(s)	108, 270, 577, 592, 703, 712, 724
NlaIII	CATG	4 cut(s)	198, 304, 566, 682
NlaIV	GGNNCC	3 cut(s)	148, 211, 506
NspI	RCATGY	1 cut(s)	198
PaeR7I	CTCGAG	1 cut(s)	174
PceI	AGGCCT	1 cut(s)	85
PciSI	GCTCTTC	1 cut(s)	35
PcsI	WCGNNNNNNNCGW	1 cut(s)	708
PctI	GAATGC	1 cut(s)	688
PfeI	GAWTC	3 cut(s)	449, 519, 532
PkrI	GCNGC	4 cut(s)	172, 193, 309, 312
Ppu21I	YACGTR	2 cut(s)	206, 759
PspN4I	GGNNCC	3 cut(s)	148, 211, 506
PspPI	GGNCC	1 cut(s)	504
PspXI	VCTCGAGB	1 cut(s)	174
PsuI	RGATCY	1 cut(s)	724
RsaI	GTAC	1 cut(s)	440
RsaNI	GTAC	1 cut(s)	439
SapI	GCTCTTC	1 cut(s)	35
SaqAI	TTAA	1 cut(s)	344
SatI	GCNGC	4 cut(s)	171, 192, 308, 311
Sau3AI	GATC	7 cut(s)	108, 270, 577, 592, 703, 712, 724
Sau96I	GGNCC	1 cut(s)	504
SetI	ASST	6 cut(s)	152, 193, 208, 492, 661, 761
Sfr274I	CTCGAG	1 cut(s)	174
SlaI	CTCGAG	1 cut(s)	174
SmlI	CTYRAG	1 cut(s)	174
SmoI	CTYRAG	1 cut(s)	174
SpeI	ACTAGT	1 cut(s)	380
Sse9I	AATT	3 cut(s)	226, 615, 696
SseBI	AGGCCT	1 cut(s)	85
SsiI	CCGC	3 cut(s)	159, 171, 425
SspMI	CTAG	1 cut(s)	381
StuI	AGGCCT	1 cut(s)	85
TaaI	ACNGT	1 cut(s)	665
TaiI	ACGT	2 cut(s)	208, 761
TaqI	TCGA	3 cut(s)	175, 371, 702
TaqII	GACCGA	1 cut(s)	445
TasI	AATT	3 cut(s)	226, 615, 696
TauI	GCSGC	1 cut(s)	173
TfiI	GAWTC	3 cut(s)	449, 519, 532
Tru1I	TTAA	1 cut(s)	344
Tru9I	TTAA	1 cut(s)	344
TseI	GCWGC	3 cut(s)	191, 307, 310
TspDTI	ATGAA	5 cut(s)	201, 317, 441, 665, 695
TspGWI	ACGGA	2 cut(s)	148, 362
XceI	RCATGY	1 cut(s)	198
XhoI	CTCGAG	1 cut(s)	174
XspI	CTAG	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.