Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0005037

Physical Location & Seq

Genomic Coordinates Reverse (-)

383185 .. 384006

Gene Structure 822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g00470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGAACATCAAGCCCCGGAGCAGCAAAAGAGAGCCTTTGCCAACAAACAAGGCAAGTCCAAAGAGAGGACCAAATCCAAGTGCAAGTTTGTTGGGGTGAGACAAAGGCCATCCGGGAAGTGGGTTGCAGAGATCAAGGACACAACAAAGAAGATAAGAATGTGGCTTGGAACCTTTGAGACTGCCGAGGGAGCTGCTCGAGCTTACGACGAGGCTGCTTACCTTCTTCGGGGTTCGAATACCAGAACCAACTTCCCCACTCATGTCCCTTCCAACTCTCCACTTTCTTTGAAGATCATAAACCTCCTCAACCAGAAAAAGGGCTTGAAAGAAAGCCCTTCAAGTTCCAACCCCAACAGCCTAAATTCCACCCCTATAGCTACGACTACTAGAATTACTAACAAATATACCACTTTCAGTGACGGTTCAGCCAACTCCATTGCTACTTTTAGTGAGACTTTTCTGCCTAATTGCAAAAGCCAGAAAAATGTTCAGGTGTTTGATGATGCATATAGACCAGACGTCAGCAACTGCATCGGTGTTCTTCAACCGGGGTTGTTTCGTAACCATTTCGGGCGCCAGTGGCCACTCTTAACTGGGTTTGATCAACTTCCAGTAACCCACGAAGGGAATGATCTAGCGAAAGACATTGGTATGACATCGTCACCTAATGTTGCAGCAGAGCCAGAATTTGAGGAGAGGCAGATTTCAGCTTCGATTTATGCAATGAATGGAGCGAACGAGTACTTGGACAATGGTTACGACTCCGGTGACGCTCTCTGGGATCATACTAGTCTCTCTCAGTTGTTCTGCCTCGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009791 GO:0009877 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0035864 GO:0035865 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048519 GO:0048523 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0080090 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

274

Amino Acids

30.26

Weight (kDa)

8.79

Isoelectric Point (pI)

37.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	28 - 78	1.3e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19790
fragaria_vesca	FvH4_6g02490
malus_domestica	MD03G1004500.v1.1 MD11G1005200.v1.1 MD12G1004600.v1.1 MD14G1003100.v1.1
prunus_persica	Prupe.6G004400_v2.0.a1 Prupe.7G004900_v2.0.a1
pyrus_communis	pycom03g00470 pycom11g00430 pycom14g00100
rosa_chinensis	RchiOBHm_Chr3g0450351 RchiOBHm_Chr5g0083271
rosa_laevigata	RLG00000025736 RLG00000037025
rosa_multiflora	Rmu_sc0000330.1_g000004 Rmu_sc0011792.1_g000007
rosa_roxburghii	Rroxscaffold_1G00001220 Rroxscaffold_6G00428080
rosa_rugosa	Rorug02G0627100.1 Rorug05G0483900
rosa_samantha	Rh3AG027500 Rh3BG028200 Rh3CG026900 Rh3DG028100 Rh5BG560600 Rh5CG583300 Rh5DG569900
rosa_wichuraiana	Rw3G002140 Rw5G049960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	525
AccB1I	GGYRCC	1 cut(s)	576
AclWI	GGATC	1 cut(s)	792
AcoI	YGGCCR	1 cut(s)	584
AcsI	RAATTY	2 cut(s)	364, 689
AcyI	GRCGYC	2 cut(s)	522, 577
AfaI	GTAC	1 cut(s)	746
AfiI	CCNNNNNNNGG	5 cut(s)	66, 120, 229, 319, 627
AgsI	TTSAA	4 cut(s)	292, 328, 342, 548
AhdI	GACNNNNNGTC	1 cut(s)	521
AhlI	ACTAGT	1 cut(s)	791
AjuI	GAANNNNNNNTTGG	2 cut(s)	731, 763
AluBI	AGCT	4 cut(s)	194, 203, 380, 713
AluI	AGCT	4 cut(s)	194, 203, 380, 713
Alw26I	GTCTC	4 cut(s)	94, 173, 449, 800
AlwI	GGATC	1 cut(s)	792
AlwNI	CAGNNNCTG	1 cut(s)	531
Ama87I	CYCGRG	1 cut(s)	198
AoxI	GGCC	2 cut(s)	107, 584
ApeKI	GCWGC	4 cut(s)	22, 194, 215, 677
ApoI	RAATTY	2 cut(s)	364, 689
AspLEI	GCGC	1 cut(s)	579
AspS9I	GGNCC	1 cut(s)	69
AsuC2I	CCSGG	3 cut(s)	17, 115, 552
AsuHPI	GGTGA	3 cut(s)	109, 657, 782
AsuII	TTCGAA	1 cut(s)	236
AvaI	CYCGRG	1 cut(s)	198
AvaII	GGWCC	1 cut(s)	69
BalI	TGGCCA	1 cut(s)	586
BanI	GGYRCC	1 cut(s)	576
BbvI	GCAGC	4 cut(s)	34, 181, 202, 689
BccI	CCATC	1 cut(s)	118
BcgI	CGANNNNNNTGC	6 cut(s)	176, 197, 210, 231, 517, 551
BclI	TGATCA	1 cut(s)	604
BcnI	CCSGG	3 cut(s)	17, 115, 552
BcoDI	GTCTC	4 cut(s)	94, 173, 449, 800
BcuI	ACTAGT	1 cut(s)	791
BfaI	CTAG	3 cut(s)	390, 638, 792
BfmI	CTRYAG	1 cut(s)	375
BfoI	RGCGCY	1 cut(s)	580
BisI	GCNGC	4 cut(s)	23, 195, 216, 678
BlsI	GCNGC	4 cut(s)	24, 196, 217, 679
BmcAI	AGTACT	1 cut(s)	746
Bme1390I	CCNGG	3 cut(s)	17, 115, 552
Bme18I	GGWCC	1 cut(s)	69
BmeRI	GACNNNNNGTC	1 cut(s)	521
BmeT110I	CYCGRG	1 cut(s)	198
BmgT120I	GGNCC	1 cut(s)	69
BmiI	GGNNCC	2 cut(s)	172, 578
BmrFI	CCNGG	3 cut(s)	17, 115, 552
BmrI	ACTGGG	1 cut(s)	606
BmsI	GCATC	2 cut(s)	496, 543
BmuI	ACTGGG	1 cut(s)	606
Bpu14I	TTCGAA	1 cut(s)	236
BpuMI	CCSGG	3 cut(s)	17, 115, 552
BsaHI	GRCGYC	2 cut(s)	522, 577
BsaJI	CCNNGG	4 cut(s)	15, 186, 551, 814
BsaWI	WCCGGW	1 cut(s)	767
Bsc4I	CCNNNNNNNGG	5 cut(s)	66, 120, 229, 319, 627
Bse1I	ACTGG	3 cut(s)	580, 601, 614
Bse3DI	GCAATG	2 cut(s)	438, 732
BseDI	CCNNGG	4 cut(s)	15, 186, 551, 814
BseGI	GGATG	1 cut(s)	110
BseLI	CCNNNNNNNGG	5 cut(s)	66, 120, 229, 319, 627
BseMI	GCAATG	2 cut(s)	438, 732
BseMII	CTCAG	1 cut(s)	815
BseNI	ACTGG	3 cut(s)	580, 601, 614
BseRI	GAGGAG	2 cut(s)	296, 710
BseXI	GCAGC	4 cut(s)	34, 181, 202, 689
BshFI	GGCC	2 cut(s)	109, 586
BshNI	GGYRCC	1 cut(s)	576
BsiHKCI	CYCGRG	1 cut(s)	198
BsiSI	CCGG	4 cut(s)	17, 114, 551, 768
BslFI	GGGAC	1 cut(s)	251
BslI	CCNNNNNNNGG	5 cut(s)	66, 120, 229, 319, 627
BsmAI	GTCTC	4 cut(s)	94, 173, 449, 800
BsmFI	GGGAC	1 cut(s)	251
BsnI	GGCC	2 cut(s)	109, 586
BsoBI	CYCGRG	1 cut(s)	198
Bsp119I	TTCGAA	1 cut(s)	236
Bsp143I	GATC	5 cut(s)	132, 294, 604, 634, 784
BspANI	GGCC	2 cut(s)	109, 586
BspCNI	CTCAG	1 cut(s)	814
BspLI	GGNNCC	2 cut(s)	172, 578
BspPI	GGATC	1 cut(s)	792
BspT104I	TTCGAA	1 cut(s)	236
BspT107I	GGYRCC	1 cut(s)	576
BsrDI	GCAATG	2 cut(s)	438, 732
BsrI	ACTGG	3 cut(s)	580, 601, 614
BssECI	CCNNGG	4 cut(s)	15, 186, 551, 814
BssMI	GATC	5 cut(s)	132, 294, 604, 634, 784
BssNI	GRCGYC	2 cut(s)	522, 577
Bst4CI	ACNGT	1 cut(s)	425
BstACI	GRCGYC	2 cut(s)	522, 577
BstBI	TTCGAA	1 cut(s)	236
BstDEI	CTNAG	1 cut(s)	801
BstF5I	GGATG	1 cut(s)	110
BstH2I	RGCGCY	1 cut(s)	580
BstHHI	GCGC	1 cut(s)	579
BstKTI	GATC	5 cut(s)	135, 297, 607, 637, 787
BstMAI	GTCTC	4 cut(s)	94, 173, 449, 800
BstMBI	GATC	5 cut(s)	132, 294, 604, 634, 784
BstMWI	GCNNNNNNNGC	3 cut(s)	191, 200, 583
BstSCI	CCNGG	3 cut(s)	15, 113, 550
BstSFI	CTRYAG	1 cut(s)	375
BstV1I	GCAGC	4 cut(s)	34, 181, 202, 689
BsuRI	GGCC	2 cut(s)	109, 586
BtsCI	GGATG	1 cut(s)	110
BtsIMutI	CAGTG	2 cut(s)	424, 587
CaiI	CAGNNNCTG	1 cut(s)	531
CfoI	GCGC	1 cut(s)	579
Cfr13I	GGNCC	1 cut(s)	69
CseI	GACGC	1 cut(s)	782
Csp6I	GTAC	1 cut(s)	745
CspCI	CAANNNNNGTGG	2 cut(s)	270, 305
CviAII	CATG	1 cut(s)	263
CviQI	GTAC	1 cut(s)	745
DdeI	CTNAG	1 cut(s)	801
DinI	GGCGCC	1 cut(s)	578
DpnI	GATC	5 cut(s)	134, 296, 606, 636, 786
DpnII	GATC	5 cut(s)	132, 294, 604, 634, 784
DriI	GACNNNNNGTC	1 cut(s)	521
EaeI	YGGCCR	1 cut(s)	584
Eam1105I	GACNNNNNGTC	1 cut(s)	521
Eco47I	GGWCC	1 cut(s)	69
Eco88I	CYCGRG	1 cut(s)	198
EcoT22I	ATGCAT	1 cut(s)	511
EgeI	GGCGCC	1 cut(s)	578
EheI	GGCGCC	1 cut(s)	578
FaeI	CATG	1 cut(s)	266
FaiI	YATR	9 cut(s)	264, 299, 377, 408, 511, 513, 656, 723, 789
FalI	AAGNNNNNCTT	2 cut(s)	20, 52
FaqI	GGGAC	1 cut(s)	251
FatI	CATG	1 cut(s)	262
FbaI	TGATCA	1 cut(s)	604
Fnu4HI	GCNGC	4 cut(s)	23, 195, 216, 678
FokI	GGATG	1 cut(s)	97
Fsp4HI	GCNGC	4 cut(s)	23, 195, 216, 678
FspBI	CTAG	3 cut(s)	390, 638, 792
GlaI	GCGC	1 cut(s)	578
GluI	GCNGC	4 cut(s)	23, 195, 216, 678
HaeII	RGCGCY	1 cut(s)	580
HaeIII	GGCC	2 cut(s)	109, 586
HapII	CCGG	4 cut(s)	17, 114, 551, 768
HgaI	GACGC	1 cut(s)	782
HhaI	GCGC	1 cut(s)	579
Hin1I	GRCGYC	2 cut(s)	522, 577
Hin1II	CATG	1 cut(s)	266
Hin6I	GCGC	1 cut(s)	577
HinP1I	GCGC	1 cut(s)	577
HinfI	GANTC	1 cut(s)	764
HpaII	CCGG	4 cut(s)	17, 114, 551, 768
HphI	GGTGA	3 cut(s)	109, 657, 782
Hpy99I	CGWCG	1 cut(s)	212
HpyAV	CCTTC	4 cut(s)	233, 279, 348, 620
HpyCH4III	ACNGT	1 cut(s)	425
HpyCH4IV	ACGT	1 cut(s)	522
HpyCH4V	TGCA	7 cut(s)	84, 128, 474, 509, 534, 677, 725
HpyF10VI	GCNNNNNNNGC	3 cut(s)	191, 200, 583
HpyF3I	CTNAG	1 cut(s)	801
HpySE526I	ACGT	1 cut(s)	522
Hsp92I	GRCGYC	2 cut(s)	522, 577
Hsp92II	CATG	1 cut(s)	266
HspAI	GCGC	1 cut(s)	577
KasI	GGCGCC	1 cut(s)	576
Ksp22I	TGATCA	1 cut(s)	604
Kzo9I	GATC	5 cut(s)	132, 294, 604, 634, 784
LmnI	GCTCC	3 cut(s)	19, 191, 734
Lsp1109I	GCAGC	4 cut(s)	34, 181, 202, 689
LweI	GCATC	2 cut(s)	496, 543
MaeI	CTAG	3 cut(s)	390, 638, 792
MaeII	ACGT	1 cut(s)	522
MaeIII	GTNAC	6 cut(s)	419, 563, 616, 663, 758, 770
MalI	GATC	5 cut(s)	134, 296, 606, 636, 786
MboI	GATC	5 cut(s)	132, 294, 604, 634, 784
MboII	GAAGA	4 cut(s)	163, 218, 304, 536
MlsI	TGGCCA	1 cut(s)	586
MluCI	AATT	4 cut(s)	364, 393, 469, 689
MluNI	TGGCCA	1 cut(s)	586
Mly113I	GGCGCC	1 cut(s)	577
MlyI	GAGTC	1 cut(s)	758
MmeI	TCCRAC	2 cut(s)	297, 372
MnlI	CCTC	7 cut(s)	60, 181, 205, 314, 317, 688, 693
Mox20I	TGGCCA	1 cut(s)	586
Mph1103I	ATGCAT	1 cut(s)	511
MscI	TGGCCA	1 cut(s)	586
MseI	TTAA	1 cut(s)	593
MslI	CAYNNNNRTG	1 cut(s)	653
Msp20I	TGGCCA	1 cut(s)	586
MspI	CCGG	4 cut(s)	17, 114, 551, 768
MspR9I	CCNGG	3 cut(s)	17, 115, 552
MwoI	GCNNNNNNNGC	3 cut(s)	191, 200, 583
NarI	GGCGCC	1 cut(s)	577
NciI	CCSGG	3 cut(s)	17, 115, 552
NdeII	GATC	5 cut(s)	132, 294, 604, 634, 784
NlaIII	CATG	1 cut(s)	266
NlaIV	GGNNCC	2 cut(s)	172, 578
NmeAIII	GCCGAG	2 cut(s)	211, 795
NmuCI	GTSAC	3 cut(s)	419, 663, 770
NsiI	ATGCAT	1 cut(s)	511
NspV	TTCGAA	1 cut(s)	236
PaeR7I	CTCGAG	1 cut(s)	198
PflFI	GACNNNGTC	1 cut(s)	661
PfoI	TCCNGGA	1 cut(s)	113
PkrI	GCNGC	4 cut(s)	24, 196, 217, 679
PleI	GAGTC	1 cut(s)	758
PluTI	GGCGCC	1 cut(s)	580
PpsI	GAGTC	1 cut(s)	758
PspN4I	GGNNCC	2 cut(s)	172, 578
PspPI	GGNCC	1 cut(s)	69
PspXI	VCTCGAGB	1 cut(s)	198
PstNI	CAGNNNCTG	1 cut(s)	531
PsyI	GACNNNGTC	1 cut(s)	661
RsaI	GTAC	1 cut(s)	746
RsaNI	GTAC	1 cut(s)	745
RseI	CAYNNNNRTG	1 cut(s)	653
SaqAI	TTAA	1 cut(s)	593
SatI	GCNGC	4 cut(s)	23, 195, 216, 678
Sau3AI	GATC	5 cut(s)	132, 294, 604, 634, 784
Sau96I	GGNCC	1 cut(s)	69
ScaI	AGTACT	1 cut(s)	746
SchI	GAGTC	1 cut(s)	758
ScrFI	CCNGG	3 cut(s)	17, 115, 552
SfaNI	GCATC	2 cut(s)	496, 543
SfcI	CTRYAG	1 cut(s)	375
SfoI	GGCGCC	1 cut(s)	578
Sfr274I	CTCGAG	1 cut(s)	198
SfuI	TTCGAA	1 cut(s)	236
SinI	GGWCC	1 cut(s)	69
SlaI	CTCGAG	1 cut(s)	198
SmiMI	CAYNNNNRTG	1 cut(s)	653
SmlI	CTYRAG	1 cut(s)	198
SmoI	CTYRAG	1 cut(s)	198
SpeI	ACTAGT	1 cut(s)	791
Sse9I	AATT	4 cut(s)	364, 393, 469, 689
SspDI	GGCGCC	1 cut(s)	576
SspMI	CTAG	3 cut(s)	390, 638, 792
StyD4I	CCNGG	3 cut(s)	15, 113, 550
TaaI	ACNGT	1 cut(s)	425
TaiI	ACGT	1 cut(s)	525
TaqI	TCGA	3 cut(s)	199, 236, 716
TasI	AATT	4 cut(s)	364, 393, 469, 689
TatI	WGTACW	1 cut(s)	744
Tru1I	TTAA	1 cut(s)	593
Tru9I	TTAA	1 cut(s)	593
TscAI	CASTG	2 cut(s)	424, 587
TseFI	GTSAC	3 cut(s)	419, 663, 770
TseI	GCWGC	4 cut(s)	22, 194, 215, 677
Tsp45I	GTSAC	3 cut(s)	419, 663, 770
TspDTI	ATGAA	1 cut(s)	743
TspRI	CASTG	2 cut(s)	424, 587
Tth111I	GACNNNGTC	1 cut(s)	661
VpaK11BI	GGWCC	1 cut(s)	69
XapI	RAATTY	2 cut(s)	364, 689
XcmI	CCANNNNNNNNNTGG	1 cut(s)	117
XhoI	CTCGAG	1 cut(s)	198
XspI	CTAG	3 cut(s)	390, 638, 792
ZraI	GACGTC	1 cut(s)	523
ZrmI	AGTACT	1 cut(s)	746
Zsp2I	ATGCAT	1 cut(s)	511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.