Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0005037

Physical Location & Seq

Genomic Coordinates Forward (+)

64427 .. 65389

Gene Structure 963 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g00100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGAGTTTCAGTTCCAACAGCCGAAGCAAGTTTCTTTTGCAGCTGCAGGCATTCCAAAAAGCAGCAGCAAAGTAGGGAAGTTGAAGGGAAGAAATAATAATCGTAGAAGCAACAACAACGCAAACAAGTTTGTTGGCGTGAGACAGAGGCCTTCGGGAAGATGGGTTGCCGAGATCAAAGACACTACTCAAAAAATAAGGATGTGGCTCGGAACCTTCGAGACCGCGGAGGAGGCTGCCCGTTCTTATGATGAAGCTGCCTGCCTTCTTCGCGGTTCAAACGCTCGAACCAACTTCATCACCCACGTATCTTTGGACTCCCCTCTCGCTTCTCGCATTTGGAATTTACTCAACACGAAAAAAGGAGGAGGAGGAGCCACTAAACAACTAGCACTACTACATCACCAAAGCAGTAGTACTAGCACTACTACTAGTACTAGTTCTGATCATGATCATCTGCCGCCTCCGTCTAAACAACTAGCACGGAAAAGTAGTACTTGTACTTCAACTAGCAGAGGCAGCGACACAACTTCCCCTTCGAGCGAGGTGTTTCAAGATAATTCTCTGCTGTTTGACAATGTCTACAAACCGGATTTGAGAAACTGCAATGAGGACTTTGAGTTGAGTTCTTCCTCCAATACTTCTCAATCCGACCTTCCTTCATGGGTGTCATATCAAACGGGGGTTGACTGCTTCTCGTTTGCTCAACAAGCGTTTGAGTTTCCGAAACATCAGGCGGCTGCTGCTTTGTCCTCTGCGGAGAGTAATACGACTACTACTAGTACTATTATTACGGCAGGTGAGGCTGATTCGGGGCTGATGGATTTCGAAAGGTTGAAAGTGGAGAGACAGATATCGGCTTCGCTTTATGCAATGAATGGGATGCAAGAGTATATGGAAACAGTTCATGATCCTAACGAGGCGCTCTGGGATCTTCCGCCGTTGTGTTCTTTGTTCTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009791 GO:0009877 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0035864 GO:0035865 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048518 GO:0048522 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0080090 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

321

Amino Acids

35.15

Weight (kDa)

6.66

Isoelectric Point (pI)

48.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	43 - 92	1.7e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19790
fragaria_vesca	FvH4_6g02490
malus_domestica	MD03G1004500.v1.1 MD11G1005200.v1.1 MD12G1004600.v1.1 MD14G1003100.v1.1
prunus_persica	Prupe.6G004400_v2.0.a1 Prupe.7G004900_v2.0.a1
pyrus_communis	pycom03g00470 pycom11g00430 pycom14g00100
rosa_chinensis	RchiOBHm_Chr3g0450351 RchiOBHm_Chr5g0083271
rosa_laevigata	RLG00000025736 RLG00000037025
rosa_multiflora	Rmu_sc0000330.1_g000004 Rmu_sc0011792.1_g000007
rosa_roxburghii	Rroxscaffold_1G00001220 Rroxscaffold_6G00428080
rosa_rugosa	Rorug02G0627100.1 Rorug05G0483900
rosa_samantha	Rh3AG027500 Rh3BG028200 Rh3CG026900 Rh3DG028100 Rh5BG560600 Rh5CG583300 Rh5DG569900
rosa_wichuraiana	Rw3G002140 Rw5G049960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	788
Acc36I	ACCTGC	1 cut(s)	788
AccI	GTMKAC	1 cut(s)	582
AccII	CGCG	2 cut(s)	227, 273
AciI	CCGC	7 cut(s)	225, 227, 273, 461, 737, 758, 938
AclWI	GGATC	2 cut(s)	905, 939
AcsI	RAATTY	1 cut(s)	343
AfaI	GTAC	5 cut(s)	418, 436, 496, 502, 784
AgsI	TTSAA	5 cut(s)	85, 279, 507, 554, 838
AhlI	ACTAGT	3 cut(s)	431, 437, 779
AloI	GAACNNNNNNTCC	1 cut(s)	28
AluBI	AGCT	2 cut(s)	44, 257
AluI	AGCT	2 cut(s)	44, 257
Alw26I	GTCTC	3 cut(s)	136, 215, 841
AlwI	GGATC	2 cut(s)	905, 939
AoxI	GGCC	1 cut(s)	149
ApeKI	GCWGC	9 cut(s)	41, 44, 63, 66, 236, 257, 519, 740, 743
ApoI	RAATTY	1 cut(s)	343
Asp700I	GAANNNNTTC	1 cut(s)	903
AspLEI	GCGC	1 cut(s)	925
AsuHPI	GGTGA	3 cut(s)	292, 395, 812
AsuII	TTCGAA	1 cut(s)	828
BaeI	ACNNNNGTAYC	2 cut(s)	291, 324
BarI	GAAGNNNNNNTAC	2 cut(s)	487, 519
BbvI	GCAGC	9 cut(s)	31, 53, 75, 78, 223, 244, 531, 727, 730
BccI	CCATC	2 cut(s)	156, 814
BceAI	ACGGC	2 cut(s)	810, 925
BclI	TGATCA	2 cut(s)	445, 451
BcoDI	GTCTC	3 cut(s)	136, 215, 841
BcuI	ACTAGT	3 cut(s)	431, 437, 779
BfaI	CTAG	7 cut(s)	389, 420, 432, 438, 479, 510, 780
BfmI	CTRYAG	1 cut(s)	45
BfoI	RGCGCY	1 cut(s)	926
BfuAI	ACCTGC	1 cut(s)	788
BmcAI	AGTACT	4 cut(s)	418, 436, 496, 784
BmiI	GGNNCC	2 cut(s)	214, 376
BmsI	GCATC	1 cut(s)	873
Bpu14I	TTCGAA	1 cut(s)	828
BsaAI	YACGTR	1 cut(s)	307
BsaBI	GATNNNNATC	1 cut(s)	450
BsaI	GGTCTC	1 cut(s)	215
BsaJI	CCNNGG	1 cut(s)	225
BsaWI	WCCGGW	1 cut(s)	589
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bse3DI	GCAATG	2 cut(s)	613, 879
Bse8I	GATNNNNATC	1 cut(s)	450
BseDI	CCNNGG	1 cut(s)	225
BseGI	GGATG	2 cut(s)	207, 888
BseJI	GATNNNNATC	1 cut(s)	450
BseMI	GCAATG	2 cut(s)	613, 879
BseRI	GAGGAG	4 cut(s)	245, 381, 384, 387
BseXI	GCAGC	9 cut(s)	31, 53, 75, 78, 223, 244, 531, 727, 730
Bsh1236I	CGCG	2 cut(s)	227, 273
BshFI	GGCC	1 cut(s)	151
BsiSI	CCGG	1 cut(s)	590
BsmAI	GTCTC	3 cut(s)	136, 215, 841
BsmI	GAATGC	1 cut(s)	51
BsnI	GGCC	1 cut(s)	151
Bso31I	GGTCTC	1 cut(s)	215
Bsp119I	TTCGAA	1 cut(s)	828
Bsp143I	GATC	5 cut(s)	174, 445, 451, 910, 931
BspACI	CCGC	7 cut(s)	225, 227, 273, 461, 737, 758, 938
BspANI	GGCC	1 cut(s)	151
BspFNI	CGCG	2 cut(s)	227, 273
BspHI	TCATGA	2 cut(s)	448, 907
BspLI	GGNNCC	2 cut(s)	214, 376
BspMAI	CTGCAG	1 cut(s)	49
BspMI	ACCTGC	1 cut(s)	788
BspPI	GGATC	2 cut(s)	905, 939
BspT104I	TTCGAA	1 cut(s)	828
BspTNI	GGTCTC	1 cut(s)	215
BsrDI	GCAATG	2 cut(s)	613, 879
BssECI	CCNNGG	1 cut(s)	225
BssMI	GATC	5 cut(s)	174, 445, 451, 910, 931
Bst4CI	ACNGT	1 cut(s)	904
BstBAI	YACGTR	1 cut(s)	307
BstBI	TTCGAA	1 cut(s)	828
BstC8I	GCNNGC	2 cut(s)	49, 262
BstDSI	CCRYGG	1 cut(s)	225
BstF5I	GGATG	2 cut(s)	207, 888
BstFNI	CGCG	2 cut(s)	227, 273
BstH2I	RGCGCY	1 cut(s)	926
BstHHI	GCGC	1 cut(s)	925
BstKTI	GATC	5 cut(s)	177, 448, 454, 913, 934
BstMAI	GTCTC	3 cut(s)	136, 215, 841
BstMBI	GATC	5 cut(s)	174, 445, 451, 910, 931
BstMWI	GCNNNNNNNGC	6 cut(s)	233, 270, 519, 710, 743, 803
BstSFI	CTRYAG	1 cut(s)	45
BstUI	CGCG	2 cut(s)	227, 273
BstV1I	GCAGC	9 cut(s)	31, 53, 75, 78, 223, 244, 531, 727, 730
BstX2I	RGATCY	1 cut(s)	931
BstYI	RGATCY	1 cut(s)	931
BsuRI	GGCC	1 cut(s)	151
BtgI	CCRYGG	1 cut(s)	225
BtsCI	GGATG	2 cut(s)	207, 888
BveI	ACCTGC	1 cut(s)	788
Cac8I	GCNNGC	2 cut(s)	49, 262
CciI	TCATGA	2 cut(s)	448, 907
CfoI	GCGC	1 cut(s)	925
Cfr42I	CCGCGG	1 cut(s)	228
Csp6I	GTAC	5 cut(s)	417, 435, 495, 501, 783
CviAII	CATG	3 cut(s)	449, 663, 908
CviQI	GTAC	5 cut(s)	417, 435, 495, 501, 783
DpnI	GATC	5 cut(s)	176, 447, 453, 912, 933
DpnII	GATC	5 cut(s)	174, 445, 451, 910, 931
EciI	GGCGGA	1 cut(s)	927
Eco147I	AGGCCT	1 cut(s)	151
Eco31I	GGTCTC	1 cut(s)	215
Eco32I	GATATC	1 cut(s)	855
EcoRV	GATATC	1 cut(s)	855
FaeI	CATG	3 cut(s)	452, 666, 911
FaiI	YATR	8 cut(s)	249, 450, 664, 673, 870, 894, 896, 909
FalI	AAGNNNNNCTT	2 cut(s)	481, 513
FatI	CATG	3 cut(s)	448, 662, 907
FbaI	TGATCA	2 cut(s)	445, 451
FblI	GTMKAC	1 cut(s)	582
FokI	GGATG	2 cut(s)	214, 895
FspBI	CTAG	7 cut(s)	389, 420, 432, 438, 479, 510, 780
GlaI	GCGC	1 cut(s)	924
HaeII	RGCGCY	1 cut(s)	926
HaeIII	GGCC	1 cut(s)	151
HapII	CCGG	1 cut(s)	590
HhaI	GCGC	1 cut(s)	925
Hin1II	CATG	3 cut(s)	452, 666, 911
Hin6I	GCGC	1 cut(s)	923
HinP1I	GCGC	1 cut(s)	923
HincII	GTYRAC	1 cut(s)	688
HindII	GTYRAC	1 cut(s)	688
HinfI	GANTC	2 cut(s)	317, 809
HpaII	CCGG	1 cut(s)	590
HphI	GGTGA	3 cut(s)	292, 395, 812
Hpy166II	GTNNAC	2 cut(s)	583, 688
Hpy188I	TCNGA	4 cut(s)	212, 445, 652, 726
Hpy188III	TCNNGA	5 cut(s)	156, 220, 449, 554, 908
Hpy8I	GTNNAC	2 cut(s)	583, 688
HpyAV	CCTTC	7 cut(s)	79, 162, 226, 275, 546, 665, 669
HpyCH4III	ACNGT	1 cut(s)	904
HpyCH4IV	ACGT	1 cut(s)	306
HpyCH4V	TGCA	5 cut(s)	41, 47, 606, 872, 886
HpyF10VI	GCNNNNNNNGC	6 cut(s)	233, 270, 519, 710, 743, 803
HpySE526I	ACGT	1 cut(s)	306
Hsp92II	CATG	3 cut(s)	452, 666, 911
HspAI	GCGC	1 cut(s)	923
Ksp22I	TGATCA	2 cut(s)	445, 451
KspI	CCGCGG	1 cut(s)	228
Kzo9I	GATC	5 cut(s)	174, 445, 451, 910, 931
LmnI	GCTCC	1 cut(s)	374
LpnPI	CCDG	6 cut(s)	33, 274, 603, 719, 783, 913
Lsp1109I	GCAGC	9 cut(s)	31, 53, 75, 78, 223, 244, 531, 727, 730
LweI	GCATC	1 cut(s)	873
MaeI	CTAG	7 cut(s)	389, 420, 432, 438, 479, 510, 780
MaeII	ACGT	1 cut(s)	306
MalI	GATC	5 cut(s)	176, 447, 453, 912, 933
MboI	GATC	5 cut(s)	174, 445, 451, 910, 931
MboII	GAAGA	5 cut(s)	102, 171, 260, 621, 926
MflI	RGATCY	1 cut(s)	931
MluCI	AATT	2 cut(s)	343, 559
MlyI	GAGTC	1 cut(s)	311
MmeI	TCCRAC	2 cut(s)	40, 675
MroXI	GAANNNNTTC	1 cut(s)	903
MspA1I	CMGCKG	2 cut(s)	44, 227
MspI	CCGG	1 cut(s)	590
Mva1269I	GAATGC	1 cut(s)	51
MvnI	CGCG	2 cut(s)	227, 273
MwoI	GCNNNNNNNGC	6 cut(s)	233, 270, 519, 710, 743, 803
NdeII	GATC	5 cut(s)	174, 445, 451, 910, 931
NlaIII	CATG	3 cut(s)	452, 666, 911
NlaIV	GGNNCC	2 cut(s)	214, 376
NmeAIII	GCCGAG	1 cut(s)	196
NspV	TTCGAA	1 cut(s)	828
PagI	TCATGA	2 cut(s)	448, 907
PaqCI	CACCTGC	1 cut(s)	788
PceI	AGGCCT	1 cut(s)	151
PcsI	WCGNNNNNNNCGW	1 cut(s)	216
PctI	GAATGC	1 cut(s)	51
PdmI	GAANNNNTTC	1 cut(s)	903
PfeI	GAWTC	1 cut(s)	809
PflFI	GACNNNGTC	1 cut(s)	578
PleI	GAGTC	1 cut(s)	311
PpsI	GAGTC	1 cut(s)	311
Ppu21I	YACGTR	1 cut(s)	307
PspN4I	GGNNCC	2 cut(s)	214, 376
PstI	CTGCAG	1 cut(s)	49
PsuI	RGATCY	1 cut(s)	931
PsyI	GACNNNGTC	1 cut(s)	578
PvuII	CAGCTG	1 cut(s)	44
RsaI	GTAC	5 cut(s)	418, 436, 496, 502, 784
RsaNI	GTAC	5 cut(s)	417, 435, 495, 501, 783
SacII	CCGCGG	1 cut(s)	228
Sau3AI	GATC	5 cut(s)	174, 445, 451, 910, 931
ScaI	AGTACT	4 cut(s)	418, 436, 496, 784
SchI	GAGTC	1 cut(s)	311
SetI	ASST	8 cut(s)	46, 218, 259, 309, 549, 657, 802, 836
SfaNI	GCATC	1 cut(s)	873
SfcI	CTRYAG	1 cut(s)	45
Sfr303I	CCGCGG	1 cut(s)	228
SfuI	TTCGAA	1 cut(s)	828
SgrBI	CCGCGG	1 cut(s)	228
SpeI	ACTAGT	3 cut(s)	431, 437, 779
Sse9I	AATT	2 cut(s)	343, 559
SseBI	AGGCCT	1 cut(s)	151
SsiI	CCGC	7 cut(s)	225, 227, 273, 461, 737, 758, 938
SspMI	CTAG	7 cut(s)	389, 420, 432, 438, 479, 510, 780
StuI	AGGCCT	1 cut(s)	151
TaaI	ACNGT	1 cut(s)	904
TaiI	ACGT	1 cut(s)	309
TaqI	TCGA	4 cut(s)	219, 286, 539, 828
TasI	AATT	2 cut(s)	343, 559
TatI	WGTACW	5 cut(s)	416, 434, 494, 500, 782
TauI	GCSGC	2 cut(s)	463, 740
TfiI	GAWTC	1 cut(s)	809
TseI	GCWGC	9 cut(s)	41, 44, 63, 66, 236, 257, 519, 740, 743
TspDTI	ATGAA	5 cut(s)	267, 286, 651, 890, 896
TspGWI	ACGGA	2 cut(s)	456, 499
Tth111I	GACNNNGTC	1 cut(s)	578
XapI	RAATTY	1 cut(s)	343
XmiI	GTMKAC	1 cut(s)	582
XmnI	GAANNNNTTC	1 cut(s)	903
XspI	CTAG	7 cut(s)	389, 420, 432, 438, 479, 510, 780
ZrmI	AGTACT	4 cut(s)	418, 436, 496, 784

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.