Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0005037

Physical Location & Seq

Genomic Coordinates Forward (+)

1882587 .. 1883705

Gene Structure 1119 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG028200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGAAAACTCAGAAAACCTTGCAATATATAAATCCTCAATTCCTCATCAACAACCAAAACAAGGAGATGCAGACGAGCTCTCCACTAGCATTCAGACCATAGCTAAGCTGATTAATACAAACTCGTTTGCAATTCATTTTTCCAAGTACAATCCCTTCCTTCCTAGCTTCTTAAATCTCGATACCTCTTCTTCCTCAAGTATCGAACTTCGAATAATGGAGTTTCAGTTCCAGCTGCAGAAACAGATTTCATTTCCGGCGGCGGCTCAATCACATAGAGCTTCAGGCATTCCAAAAAGCAGCAAAGGCAATAAGTTGAAGGGAGGTAGAAATAGAAGCAACAACACCAACAAGTTTGTTGGGGTGAGACAGAGACCTTCAGGGAGATGGGTAGCTGAGATCAAAGACACAACGCAAAAGATAAGGATGTGGCTTGGAACCTTTGAAACTGCTGAAGAGGCTGCTCGAGCTTACGACGAAGCTGCTTGCCTTCTTCGTGGCAACAATACTCGAACCAACTTCATCACACATGTCTCTTTGGATTCCCCTCTTGCTTCTCGAATCCAAAATCTCCTCAACACCAAAAAGCCAGGATCCAATTGTGAACAACAAATCCAAATGACTAGCAGTACTTCTTCTAGTACTGCCTCTCATCCCCCCACAGCTAAAAGTACTAGTAGCACAAGTACTAGCGCTAGTTCCACTAGCAAGAGTTGTCTTTCGAGTGAGGTATCGAATCAAGAGTCGTCTCATCATCAATTTTCTGATGATGTATACAAGCCAGACTTGAGTAACTGCAATCAGCTCCCTTTTGATCAGTTGAGTACTAGCACTACTACTTCTTCAAATTCTTATCAACCCAATATTTCTTGGGTTGATGGATTCTCATTTGCTCAGCAAATGTTTGCGACACCAAAAGATGATGCTGCTTTGTCGAGCGAATTAACTTCCGCTGATGAACGTGGTGATTCGGATGAGTTGTTGGAATTCGAAAGGATGAAAGTCGAAAGACAGATATCAGCTTCATTGTATGCTATGAATGGTGTGCAAGAGTATATGGACACAGTTCATGATGCGAATGAAGCTCTTTGGGATCTTCAACCATTCTGTGCTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009791 GO:0009877 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0035864 GO:0035865 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048518 GO:0048522 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0080090 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

372

Amino Acids

41.1

Weight (kDa)

5.8

Isoelectric Point (pI)

43.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	118 - 167	2.7e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19790
fragaria_vesca	FvH4_6g02490
malus_domestica	MD03G1004500.v1.1 MD11G1005200.v1.1 MD12G1004600.v1.1 MD14G1003100.v1.1
prunus_persica	Prupe.6G004400_v2.0.a1 Prupe.7G004900_v2.0.a1
pyrus_communis	pycom03g00470 pycom11g00430 pycom14g00100
rosa_chinensis	RchiOBHm_Chr3g0450351 RchiOBHm_Chr5g0083271
rosa_laevigata	RLG00000025736 RLG00000037025
rosa_multiflora	Rmu_sc0000330.1_g000004 Rmu_sc0011792.1_g000007
rosa_roxburghii	Rroxscaffold_1G00001220 Rroxscaffold_6G00428080
rosa_rugosa	Rorug02G0627100.1 Rorug05G0483900
rosa_samantha	Rh3AG027500 Rh3BG028200 Rh3CG026900 Rh3DG028100 Rh5BG560600 Rh5CG583300 Rh5DG569900
rosa_wichuraiana	Rw3G002140 Rw5G049960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	774
AciI	CCGC	3 cut(s)	260, 263, 951
AclWI	GGATC	3 cut(s)	588, 601, 1101
AcsI	RAATTY	2 cut(s)	847, 986
AcuI	CTGAAG	3 cut(s)	267, 363, 474
AfaI	GTAC	6 cut(s)	149, 631, 643, 673, 688, 826
AfeI	AGCGCT	1 cut(s)	694
AfiI	CCNNNNNNNGG	1 cut(s)	62
AflIII	ACRYGT	1 cut(s)	529
AgsI	TTSAA	4 cut(s)	319, 446, 846, 1100
AhlI	ACTAGT	1 cut(s)	674
AjnI	CCWGG	1 cut(s)	589
AloI	GAACNNNNNNTCC	4 cut(s)	212, 244, 597, 629
Alw21I	GWGCWC	1 cut(s)	81
Alw26I	GTCTC	4 cut(s)	361, 367, 538, 753
AlwI	GGATC	3 cut(s)	588, 601, 1101
Ama87I	CYCGRG	1 cut(s)	465
Aor51HI	AGCGCT	1 cut(s)	694
ApeKI	GCWGC	5 cut(s)	235, 300, 461, 482, 926
ApoI	RAATTY	2 cut(s)	847, 986
ArsI	GACNNNNNNTTYG	2 cut(s)	728, 760
AseI	ATTAAT	1 cut(s)	114
AspLEI	GCGC	1 cut(s)	695
AsuHPI	GGTGA	2 cut(s)	376, 977
AsuII	TTCGAA	2 cut(s)	211, 990
AvaI	CYCGRG	1 cut(s)	465
BamHI	GGATCC	1 cut(s)	593
BanII	GRGCYC	1 cut(s)	81
BarI	GAAGNNNNNNTAC	2 cut(s)	140, 172
Bbv12I	GWGCWC	1 cut(s)	81
BbvI	GCAGC	5 cut(s)	222, 312, 448, 469, 913
BccI	CCATC	2 cut(s)	381, 872
BcgI	CGANNNNNNTGC	2 cut(s)	464, 498
BciT130I	CCWGG	1 cut(s)	591
BclI	TGATCA	1 cut(s)	814
BcoDI	GTCTC	4 cut(s)	361, 367, 538, 753
BcuI	ACTAGT	1 cut(s)	674
BfaI	CTAG	9 cut(s)	87, 165, 624, 639, 675, 690, 696, 705, 828
BfmI	CTRYAG	1 cut(s)	236
BfoI	RGCGCY	1 cut(s)	696
BisI	GCNGC	7 cut(s)	236, 261, 264, 301, 462, 483, 927
BlpI	GCTNAGC	2 cut(s)	105, 894
BlsI	GCNGC	7 cut(s)	237, 262, 265, 302, 463, 484, 928
BmcAI	AGTACT	5 cut(s)	631, 643, 673, 688, 826
Bme1390I	CCNGG	1 cut(s)	591
BmeT110I	CYCGRG	1 cut(s)	465
BmiI	GGNNCC	2 cut(s)	439, 595
BmrFI	CCNGG	1 cut(s)	591
BmsI	GCATC	3 cut(s)	58, 913, 1063
Bpu1102I	GCTNAGC	2 cut(s)	105, 894
Bpu14I	TTCGAA	2 cut(s)	211, 990
BpuEI	CTTGAG	2 cut(s)	181, 808
BsaI	GGTCTC	1 cut(s)	367
BsaXI	ACNNNNNCTCC	4 cut(s)	65, 95, 212, 242
Bsc4I	CCNNNNNNNGG	1 cut(s)	62
BseBI	CCWGG	1 cut(s)	591
BseGI	GGATG	4 cut(s)	432, 652, 979, 1002
BseLI	CCNNNNNNNGG	1 cut(s)	62
BseMII	CTCAG	3 cut(s)	24, 387, 908
BseRI	GAGGAG	1 cut(s)	563
BseXI	GCAGC	5 cut(s)	222, 312, 448, 469, 913
BsiHKAI	GWGCWC	1 cut(s)	81
BsiHKCI	CYCGRG	1 cut(s)	465
BsiSI	CCGG	1 cut(s)	257
BslI	CCNNNNNNNGG	1 cut(s)	62
BsmAI	GTCTC	4 cut(s)	361, 367, 538, 753
BsmBI	CGTCTC	1 cut(s)	753
BsmI	GAATGC	2 cut(s)	90, 288
Bso31I	GGTCTC	1 cut(s)	367
BsoBI	CYCGRG	1 cut(s)	465
Bsp119I	TTCGAA	2 cut(s)	211, 990
Bsp1286I	GDGCHC	1 cut(s)	81
Bsp143I	GATC	4 cut(s)	399, 593, 814, 1093
Bsp1720I	GCTNAGC	2 cut(s)	105, 894
BspACI	CCGC	3 cut(s)	260, 263, 951
BspCNI	CTCAG	3 cut(s)	23, 388, 907
BspHI	TCATGA	1 cut(s)	1069
BspLI	GGNNCC	2 cut(s)	439, 595
BspMAI	CTGCAG	1 cut(s)	240
BspPI	GGATC	3 cut(s)	588, 601, 1101
BspT104I	TTCGAA	2 cut(s)	211, 990
BspTNI	GGTCTC	1 cut(s)	367
BssMI	GATC	4 cut(s)	399, 593, 814, 1093
BssNAI	GTATAC	1 cut(s)	775
Bst1107I	GTATAC	1 cut(s)	775
Bst2UI	CCWGG	1 cut(s)	591
Bst4CI	ACNGT	1 cut(s)	1066
Bst6I	CTCTTC	2 cut(s)	193, 450
BstBI	TTCGAA	2 cut(s)	211, 990
BstC8I	GCNNGC	1 cut(s)	487
BstDEI	CTNAG	4 cut(s)	10, 105, 396, 894
BstF5I	GGATG	4 cut(s)	432, 652, 979, 1002
BstH2I	RGCGCY	1 cut(s)	696
BstHHI	GCGC	1 cut(s)	695
BstKTI	GATC	4 cut(s)	402, 596, 817, 1096
BstMAI	GTCTC	4 cut(s)	361, 367, 538, 753
BstMBI	GATC	4 cut(s)	399, 593, 814, 1093
BstMWI	GCNNNNNNNGC	4 cut(s)	306, 458, 467, 1082
BstNI	CCWGG	1 cut(s)	591
BstNSI	RCATGY	1 cut(s)	533
BstSCI	CCNGG	1 cut(s)	589
BstSFI	CTRYAG	1 cut(s)	236
BstV1I	GCAGC	5 cut(s)	222, 312, 448, 469, 913
BstX2I	RGATCY	2 cut(s)	593, 1093
BstYI	RGATCY	2 cut(s)	593, 1093
BstZ17I	GTATAC	1 cut(s)	775
BtsCI	GGATG	4 cut(s)	432, 652, 979, 1002
Cac8I	GCNNGC	1 cut(s)	487
CciI	TCATGA	1 cut(s)	1069
CfoI	GCGC	1 cut(s)	695
Csp6I	GTAC	6 cut(s)	148, 630, 642, 672, 687, 825
CviAII	CATG	2 cut(s)	530, 1070
CviQI	GTAC	6 cut(s)	148, 630, 642, 672, 687, 825
DdeI	CTNAG	4 cut(s)	10, 105, 396, 894
DpnI	GATC	4 cut(s)	401, 595, 816, 1095
DpnII	GATC	4 cut(s)	399, 593, 814, 1093
Eam1104I	CTCTTC	2 cut(s)	193, 450
EarI	CTCTTC	2 cut(s)	193, 450
Ecl136II	GAGCTC	1 cut(s)	79
Eco24I	GRGCYC	1 cut(s)	81
Eco31I	GGTCTC	1 cut(s)	367
Eco32I	GATATC	1 cut(s)	1017
Eco47III	AGCGCT	1 cut(s)	694
Eco53kI	GAGCTC	1 cut(s)	79
Eco57I	CTGAAG	3 cut(s)	267, 363, 474
Eco88I	CYCGRG	1 cut(s)	465
EcoICRI	GAGCTC	1 cut(s)	79
EcoRI	GAATTC	1 cut(s)	986
EcoRII	CCWGG	1 cut(s)	589
EcoRV	GATATC	1 cut(s)	1017
EcoT38I	GRGCYC	1 cut(s)	81
Esp3I	CGTCTC	1 cut(s)	753
FaeI	CATG	2 cut(s)	533, 1073
FalI	AAGNNNNNCTT	2 cut(s)	770, 802
FatI	CATG	2 cut(s)	529, 1069
FbaI	TGATCA	1 cut(s)	814
FblI	GTMKAC	1 cut(s)	774
Fnu4HI	GCNGC	7 cut(s)	236, 261, 264, 301, 462, 483, 927
FokI	GGATG	4 cut(s)	439, 639, 986, 1009
FriOI	GRGCYC	1 cut(s)	81
Fsp4HI	GCNGC	7 cut(s)	236, 261, 264, 301, 462, 483, 927
FspBI	CTAG	9 cut(s)	87, 165, 624, 639, 675, 690, 696, 705, 828
GlaI	GCGC	1 cut(s)	694
GluI	GCNGC	7 cut(s)	236, 261, 264, 301, 462, 483, 927
HaeII	RGCGCY	1 cut(s)	696
HapII	CCGG	1 cut(s)	257
HhaI	GCGC	1 cut(s)	695
Hin1II	CATG	2 cut(s)	533, 1073
Hin6I	GCGC	1 cut(s)	693
HinP1I	GCGC	1 cut(s)	693
HinfI	GANTC	6 cut(s)	542, 561, 736, 743, 882, 968
HpaII	CCGG	1 cut(s)	257
HphI	GGTGA	2 cut(s)	376, 977
Hpy166II	GTNNAC	2 cut(s)	605, 775
Hpy188I	TCNGA	4 cut(s)	13, 96, 766, 973
Hpy188III	TCNNGA	4 cut(s)	179, 558, 740, 1070
Hpy8I	GTNNAC	2 cut(s)	605, 775
Hpy99I	CGWCG	1 cut(s)	479
HpyAV	CCTTC	5 cut(s)	166, 170, 313, 387, 500
HpyCH4III	ACNGT	1 cut(s)	1066
HpyCH4IV	ACGT	1 cut(s)	961
HpyCH4V	TGCA	6 cut(s)	23, 71, 131, 238, 798, 1048
HpyF10VI	GCNNNNNNNGC	4 cut(s)	306, 458, 467, 1082
HpyF3I	CTNAG	4 cut(s)	10, 105, 396, 894
HpySE526I	ACGT	1 cut(s)	961
Hsp92II	CATG	2 cut(s)	533, 1073
HspAI	GCGC	1 cut(s)	693
Ksp22I	TGATCA	1 cut(s)	814
Kzo9I	GATC	4 cut(s)	399, 593, 814, 1093
LmnI	GCTCC	1 cut(s)	810
LpnPI	CCDG	7 cut(s)	245, 270, 270, 366, 576, 603, 795
Lsp1109I	GCAGC	5 cut(s)	222, 312, 448, 469, 913
LweI	GCATC	3 cut(s)	58, 913, 1063
MaeI	CTAG	9 cut(s)	87, 165, 624, 639, 675, 690, 696, 705, 828
MaeII	ACGT	1 cut(s)	961
MaeIII	GTNAC	1 cut(s)	791
MalI	GATC	4 cut(s)	401, 595, 816, 1095
MboI	GATC	4 cut(s)	399, 593, 814, 1093
MboII	GAAGA	7 cut(s)	180, 183, 467, 485, 627, 834, 1088
MfeI	CAATTG	1 cut(s)	598
MflI	RGATCY	2 cut(s)	593, 1093
MhlI	GDGCHC	1 cut(s)	81
MluCI	AATT	7 cut(s)	39, 132, 598, 758, 847, 941, 986
MlyI	GAGTC	1 cut(s)	752
MmeI	TCCRAC	1 cut(s)	963
MseI	TTAA	3 cut(s)	114, 173, 944
MspA1I	CMGCKG	2 cut(s)	235, 953
MspI	CCGG	1 cut(s)	257
MspR9I	CCNGG	1 cut(s)	591
MunI	CAATTG	1 cut(s)	598
Mva1269I	GAATGC	2 cut(s)	90, 288
MvaI	CCWGG	1 cut(s)	591
MwoI	GCNNNNNNNGC	4 cut(s)	306, 458, 467, 1082
NdeII	GATC	4 cut(s)	399, 593, 814, 1093
NlaIII	CATG	2 cut(s)	533, 1073
NlaIV	GGNNCC	2 cut(s)	439, 595
NspI	RCATGY	1 cut(s)	533
NspV	TTCGAA	2 cut(s)	211, 990
PaeR7I	CTCGAG	1 cut(s)	465
PagI	TCATGA	1 cut(s)	1069
PciI	ACATGT	1 cut(s)	529
PctI	GAATGC	2 cut(s)	90, 288
PfeI	GAWTC	5 cut(s)	542, 561, 736, 882, 968
PkrI	GCNGC	7 cut(s)	237, 262, 265, 302, 463, 484, 928
PleI	GAGTC	1 cut(s)	751
PpsI	GAGTC	1 cut(s)	751
PscI	ACATGT	1 cut(s)	529
PshBI	ATTAAT	1 cut(s)	114
Psp124BI	GAGCTC	1 cut(s)	81
Psp6I	CCWGG	1 cut(s)	589
PspGI	CCWGG	1 cut(s)	589
PspN4I	GGNNCC	2 cut(s)	439, 595
PspXI	VCTCGAGB	1 cut(s)	465
PstI	CTGCAG	1 cut(s)	240
PsuI	RGATCY	2 cut(s)	593, 1093
PvuII	CAGCTG	1 cut(s)	235
RsaI	GTAC	6 cut(s)	149, 631, 643, 673, 688, 826
RsaNI	GTAC	6 cut(s)	148, 630, 642, 672, 687, 825
SacI	GAGCTC	1 cut(s)	81
SaqAI	TTAA	3 cut(s)	114, 173, 944
SatI	GCNGC	7 cut(s)	236, 261, 264, 301, 462, 483, 927
Sau3AI	GATC	4 cut(s)	399, 593, 814, 1093
ScaI	AGTACT	5 cut(s)	631, 643, 673, 688, 826
SchI	GAGTC	1 cut(s)	752
ScrFI	CCNGG	1 cut(s)	591
SduI	GDGCHC	1 cut(s)	81
SfaNI	GCATC	3 cut(s)	58, 913, 1063
SfcI	CTRYAG	1 cut(s)	236
Sfr274I	CTCGAG	1 cut(s)	465
SfuI	TTCGAA	2 cut(s)	211, 990
SlaI	CTCGAG	1 cut(s)	465
SmlI	CTYRAG	3 cut(s)	196, 465, 787
SmoI	CTYRAG	3 cut(s)	196, 465, 787
SpeI	ACTAGT	1 cut(s)	674
Sse9I	AATT	7 cut(s)	39, 132, 598, 758, 847, 941, 986
SsiI	CCGC	3 cut(s)	260, 263, 951
SspI	AATATT	1 cut(s)	865
SspMI	CTAG	9 cut(s)	87, 165, 624, 639, 675, 690, 696, 705, 828
SstI	GAGCTC	1 cut(s)	81
StyD4I	CCNGG	1 cut(s)	589
TaaI	ACNGT	1 cut(s)	1066
TaiI	ACGT	1 cut(s)	964
TasI	AATT	7 cut(s)	39, 132, 598, 758, 847, 941, 986
TatI	WGTACW	6 cut(s)	147, 629, 641, 671, 686, 824
TauI	GCSGC	2 cut(s)	263, 266
TfiI	GAWTC	5 cut(s)	542, 561, 736, 882, 968
Tru1I	TTAA	3 cut(s)	114, 173, 944
Tru9I	TTAA	3 cut(s)	114, 173, 944
TseI	GCWGC	5 cut(s)	235, 300, 461, 482, 926
TspDTI	ATGAA	9 cut(s)	125, 240, 511, 972, 1013, 1014, 1052, 1058, 1095
VspI	ATTAAT	1 cut(s)	114
XapI	RAATTY	2 cut(s)	847, 986
XceI	RCATGY	1 cut(s)	533
XhoI	CTCGAG	1 cut(s)	465
XmiI	GTMKAC	1 cut(s)	774
XspI	CTAG	9 cut(s)	87, 165, 624, 639, 675, 690, 696, 705, 828
ZrmI	AGTACT	5 cut(s)	631, 643, 673, 688, 826

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.