Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0005037

Physical Location & Seq

Genomic Coordinates Reverse (-)

349525 .. 350367

Gene Structure 843 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1004500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGAACATCAAGCCCCGAAGCAGCAAAAGGGAGTCTTTGCCAACAAACAAGGCAAGTCCAAAGAGAGGACCAAATCCAAGTGCAAGTTTGTTGGGGTGAGACAAAGGCCATCCGGGAAGTGGGTTGCAGAGATCAAGGACACAACAAAGAAGATAAGAATGTGGCTTGGAACCTTTGAGACTGCCGAGGAAGCTGCTCGAGCTTACGACGAGGCTGCTTACCTTCTTCGGGGTTCGAATACCAGAACCAACTTCTCCACTCATGTCCCCTCCAACTCTCCACTTTCTTTGAAGATCAGAAACCTCCTCAACCAGAAAAAGGGCTTGAAACAAAGCCCTCCAAGTTCCAACCCCAACAGCTTAAATTTCACCCCTATAGCTACGACTGCTAGAATTACTAACAAATATACCACTTTCAGTGACGGTTCATCCAACTCCATTGCTACTTTTAGTGAGATTTTTCTGCCTAATTGCAAAAGCCAGAAAAATGTTCAGGTGTTCGATGATGCATATAGACCAGACGTCAGCAACTGCATCGGTGTTCTTCAACCGGGGTTGTTTCATAACCATTTCGGTCGCCAGTGGCCACTCTTAACTGGGTTTGATCAGCTTCCAGTAACCCACGAAGGGAACGATCTAGCGAAAGACATTGGTATGACATCGTCACCTAATGTTGCAGCAGAGCCAGAAGTGACAGAATTTGAGCGCTTGAAGGTAGAGAGGCAGATTTCAGCTTCGATTTATGCAATGAACGGAGTGAACGAGTACTTGGACAATGGGTACGACTCCGGTGATGCTCTCTGGGATCTTCCTAGTCTCTCTCAGTTGTTCTGCCTCGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009791 GO:0009877 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0035864 GO:0035865 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048519 GO:0048523 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0080090 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

281

Amino Acids

31.17

Weight (kDa)

9.06

Isoelectric Point (pI)

39.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	28 - 78	2e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0005037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19790
fragaria_vesca	FvH4_6g02490
malus_domestica	MD03G1004500.v1.1 MD11G1005200.v1.1 MD12G1004600.v1.1 MD14G1003100.v1.1
prunus_persica	Prupe.6G004400_v2.0.a1 Prupe.7G004900_v2.0.a1
pyrus_communis	pycom03g00470 pycom11g00430 pycom14g00100
rosa_chinensis	RchiOBHm_Chr3g0450351 RchiOBHm_Chr5g0083271
rosa_laevigata	RLG00000025736 RLG00000037025
rosa_multiflora	Rmu_sc0000330.1_g000004 Rmu_sc0011792.1_g000007
rosa_roxburghii	Rroxscaffold_1G00001220 Rroxscaffold_6G00428080
rosa_rugosa	Rorug02G0627100.1 Rorug05G0483900
rosa_samantha	Rh3AG027500 Rh3BG028200 Rh3CG026900 Rh3DG028100 Rh5BG560600 Rh5CG583300 Rh5DG569900
rosa_wichuraiana	Rw3G002140 Rw5G049960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	525
AclWI	GGATC	1 cut(s)	813
AcoI	YGGCCR	1 cut(s)	584
AcsI	RAATTY	2 cut(s)	364, 698
AcyI	GRCGYC	1 cut(s)	522
AfaI	GTAC	2 cut(s)	767, 782
AfeI	AGCGCT	1 cut(s)	707
AfiI	CCNNNNNNNGG	5 cut(s)	66, 120, 229, 319, 627
AgsI	TTSAA	4 cut(s)	292, 328, 548, 712
AhdI	GACNNNNNGTC	1 cut(s)	521
AjuI	GAANNNNNNNTTGG	2 cut(s)	752, 784
AluBI	AGCT	6 cut(s)	194, 203, 360, 380, 610, 734
AluI	AGCT	6 cut(s)	194, 203, 360, 380, 610, 734
Alw26I	GTCTC	3 cut(s)	94, 173, 821
AlwI	GGATC	1 cut(s)	813
AlwNI	CAGNNNCTG	1 cut(s)	531
Ama87I	CYCGRG	1 cut(s)	198
Aor51HI	AGCGCT	1 cut(s)	707
AoxI	GGCC	2 cut(s)	107, 584
ApeKI	GCWGC	4 cut(s)	22, 194, 215, 677
ApoI	RAATTY	2 cut(s)	364, 698
AspLEI	GCGC	1 cut(s)	708
AspS9I	GGNCC	1 cut(s)	69
AsuC2I	CCSGG	2 cut(s)	115, 552
AsuHPI	GGTGA	4 cut(s)	109, 361, 657, 803
AsuII	TTCGAA	1 cut(s)	236
AvaI	CYCGRG	1 cut(s)	198
AvaII	GGWCC	1 cut(s)	69
BalI	TGGCCA	1 cut(s)	586
BbvI	GCAGC	4 cut(s)	34, 181, 202, 689
BccI	CCATC	1 cut(s)	118
BcgI	CGANNNNNNTGC	6 cut(s)	176, 197, 210, 231, 517, 551
BclI	TGATCA	1 cut(s)	604
BcnI	CCSGG	2 cut(s)	115, 552
BcoDI	GTCTC	3 cut(s)	94, 173, 821
BfaI	CTAG	3 cut(s)	390, 638, 813
BfmI	CTRYAG	1 cut(s)	375
BfoI	RGCGCY	1 cut(s)	709
BisI	GCNGC	4 cut(s)	23, 195, 216, 678
BlsI	GCNGC	4 cut(s)	24, 196, 217, 679
BmcAI	AGTACT	1 cut(s)	767
Bme1390I	CCNGG	2 cut(s)	115, 552
Bme18I	GGWCC	1 cut(s)	69
BmeRI	GACNNNNNGTC	1 cut(s)	521
BmeT110I	CYCGRG	1 cut(s)	198
BmgT120I	GGNCC	1 cut(s)	69
BmiI	GGNNCC	1 cut(s)	172
BmrFI	CCNGG	2 cut(s)	115, 552
BmrI	ACTGGG	1 cut(s)	606
BmsI	GCATC	3 cut(s)	496, 543, 784
BmuI	ACTGGG	1 cut(s)	606
Bpu14I	TTCGAA	1 cut(s)	236
BpuMI	CCSGG	2 cut(s)	115, 552
BsaHI	GRCGYC	1 cut(s)	522
BsaJI	CCNNGG	3 cut(s)	186, 551, 835
BsaWI	WCCGGW	1 cut(s)	788
Bsc4I	CCNNNNNNNGG	5 cut(s)	66, 120, 229, 319, 627
Bse1I	ACTGG	3 cut(s)	580, 601, 614
Bse3DI	GCAATG	2 cut(s)	438, 753
BseDI	CCNNGG	3 cut(s)	186, 551, 835
BseGI	GGATG	2 cut(s)	110, 428
BseLI	CCNNNNNNNGG	5 cut(s)	66, 120, 229, 319, 627
BseMI	GCAATG	2 cut(s)	438, 753
BseMII	CTCAG	1 cut(s)	836
BseNI	ACTGG	3 cut(s)	580, 601, 614
BseRI	GAGGAG	1 cut(s)	296
BseXI	GCAGC	4 cut(s)	34, 181, 202, 689
Bsh1285I	CGRYCG	1 cut(s)	577
BshFI	GGCC	2 cut(s)	109, 586
BsiEI	CGRYCG	1 cut(s)	577
BsiHKCI	CYCGRG	1 cut(s)	198
BsiSI	CCGG	3 cut(s)	114, 551, 789
BslFI	GGGAC	1 cut(s)	251
BslI	CCNNNNNNNGG	5 cut(s)	66, 120, 229, 319, 627
BsmAI	GTCTC	3 cut(s)	94, 173, 821
BsmFI	GGGAC	1 cut(s)	251
BsnI	GGCC	2 cut(s)	109, 586
BsoBI	CYCGRG	1 cut(s)	198
Bsp119I	TTCGAA	1 cut(s)	236
Bsp143I	GATC	5 cut(s)	132, 294, 604, 634, 805
BspANI	GGCC	2 cut(s)	109, 586
BspCNI	CTCAG	1 cut(s)	835
BspLI	GGNNCC	1 cut(s)	172
BspPI	GGATC	1 cut(s)	813
BspT104I	TTCGAA	1 cut(s)	236
BsrDI	GCAATG	2 cut(s)	438, 753
BsrI	ACTGG	3 cut(s)	580, 601, 614
BssECI	CCNNGG	3 cut(s)	186, 551, 835
BssMI	GATC	5 cut(s)	132, 294, 604, 634, 805
BssNI	GRCGYC	1 cut(s)	522
Bst4CI	ACNGT	1 cut(s)	425
BstACI	GRCGYC	1 cut(s)	522
BstBI	TTCGAA	1 cut(s)	236
BstDEI	CTNAG	1 cut(s)	822
BstF5I	GGATG	2 cut(s)	110, 428
BstH2I	RGCGCY	1 cut(s)	709
BstHHI	GCGC	1 cut(s)	708
BstKTI	GATC	5 cut(s)	135, 297, 607, 637, 808
BstMAI	GTCTC	3 cut(s)	94, 173, 821
BstMBI	GATC	5 cut(s)	132, 294, 604, 634, 805
BstMCI	CGRYCG	1 cut(s)	577
BstMWI	GCNNNNNNNGC	3 cut(s)	191, 200, 386
BstSCI	CCNGG	2 cut(s)	113, 550
BstSFI	CTRYAG	1 cut(s)	375
BstV1I	GCAGC	4 cut(s)	34, 181, 202, 689
BstX2I	RGATCY	1 cut(s)	805
BstYI	RGATCY	1 cut(s)	805
BsuRI	GGCC	2 cut(s)	109, 586
BtsCI	GGATG	2 cut(s)	110, 428
BtsIMutI	CAGTG	2 cut(s)	424, 587
CaiI	CAGNNNCTG	1 cut(s)	531
CfoI	GCGC	1 cut(s)	708
Cfr13I	GGNCC	1 cut(s)	69
Csp6I	GTAC	2 cut(s)	766, 781
CspCI	CAANNNNNGTGG	2 cut(s)	270, 305
CviAII	CATG	1 cut(s)	263
CviQI	GTAC	2 cut(s)	766, 781
DdeI	CTNAG	1 cut(s)	822
DpnI	GATC	5 cut(s)	134, 296, 606, 636, 807
DpnII	GATC	5 cut(s)	132, 294, 604, 634, 805
DriI	GACNNNNNGTC	1 cut(s)	521
EaeI	YGGCCR	1 cut(s)	584
Eam1105I	GACNNNNNGTC	1 cut(s)	521
Eco47I	GGWCC	1 cut(s)	69
Eco47III	AGCGCT	1 cut(s)	707
Eco88I	CYCGRG	1 cut(s)	198
EcoT22I	ATGCAT	1 cut(s)	511
FaeI	CATG	1 cut(s)	266
FaiI	YATR	8 cut(s)	264, 377, 408, 511, 513, 564, 656, 744
FalI	AAGNNNNNCTT	2 cut(s)	20, 52
FaqI	GGGAC	1 cut(s)	251
FatI	CATG	1 cut(s)	262
FbaI	TGATCA	1 cut(s)	604
Fnu4HI	GCNGC	4 cut(s)	23, 195, 216, 678
FokI	GGATG	2 cut(s)	97, 415
Fsp4HI	GCNGC	4 cut(s)	23, 195, 216, 678
FspBI	CTAG	3 cut(s)	390, 638, 813
GlaI	GCGC	1 cut(s)	707
GluI	GCNGC	4 cut(s)	23, 195, 216, 678
HaeII	RGCGCY	1 cut(s)	709
HaeIII	GGCC	2 cut(s)	109, 586
HapII	CCGG	3 cut(s)	114, 551, 789
HhaI	GCGC	1 cut(s)	708
Hin1I	GRCGYC	1 cut(s)	522
Hin1II	CATG	1 cut(s)	266
Hin6I	GCGC	1 cut(s)	706
HinP1I	GCGC	1 cut(s)	706
HinfI	GANTC	2 cut(s)	33, 785
HpaII	CCGG	3 cut(s)	114, 551, 789
HphI	GGTGA	4 cut(s)	109, 361, 657, 803
Hpy166II	GTNNAC	1 cut(s)	760
Hpy188I	TCNGA	1 cut(s)	299
Hpy8I	GTNNAC	1 cut(s)	760
Hpy99I	CGWCG	1 cut(s)	212
HpyAV	CCTTC	3 cut(s)	233, 620, 706
HpyCH4III	ACNGT	1 cut(s)	425
HpyCH4IV	ACGT	1 cut(s)	522
HpyCH4V	TGCA	7 cut(s)	84, 128, 474, 509, 534, 677, 746
HpyF10VI	GCNNNNNNNGC	3 cut(s)	191, 200, 386
HpyF3I	CTNAG	1 cut(s)	822
HpySE526I	ACGT	1 cut(s)	522
Hsp92I	GRCGYC	1 cut(s)	522
Hsp92II	CATG	1 cut(s)	266
HspAI	GCGC	1 cut(s)	706
Ksp22I	TGATCA	1 cut(s)	604
Kzo9I	GATC	5 cut(s)	132, 294, 604, 634, 805
Lsp1109I	GCAGC	4 cut(s)	34, 181, 202, 689
LweI	GCATC	3 cut(s)	496, 543, 784
MaeI	CTAG	3 cut(s)	390, 638, 813
MaeII	ACGT	1 cut(s)	522
MaeIII	GTNAC	4 cut(s)	419, 616, 663, 691
MalI	GATC	5 cut(s)	134, 296, 606, 636, 807
MboI	GATC	5 cut(s)	132, 294, 604, 634, 805
MboII	GAAGA	5 cut(s)	163, 218, 304, 536, 800
MflI	RGATCY	1 cut(s)	805
MlsI	TGGCCA	1 cut(s)	586
MluCI	AATT	4 cut(s)	364, 393, 469, 698
MluNI	TGGCCA	1 cut(s)	586
MlyI	GAGTC	2 cut(s)	42, 779
MmeI	TCCRAC	3 cut(s)	297, 372, 456
MnlI	CCTC	8 cut(s)	60, 181, 205, 280, 314, 317, 348, 714
Mox20I	TGGCCA	1 cut(s)	586
Mph1103I	ATGCAT	1 cut(s)	511
MscI	TGGCCA	1 cut(s)	586
MseI	TTAA	2 cut(s)	362, 593
MslI	CAYNNNNRTG	1 cut(s)	653
Msp20I	TGGCCA	1 cut(s)	586
MspI	CCGG	3 cut(s)	114, 551, 789
MspR9I	CCNGG	2 cut(s)	115, 552
MwoI	GCNNNNNNNGC	3 cut(s)	191, 200, 386
NciI	CCSGG	2 cut(s)	115, 552
NdeII	GATC	5 cut(s)	132, 294, 604, 634, 805
NlaIII	CATG	1 cut(s)	266
NlaIV	GGNNCC	1 cut(s)	172
NmeAIII	GCCGAG	2 cut(s)	211, 816
NmuCI	GTSAC	3 cut(s)	419, 663, 691
NsiI	ATGCAT	1 cut(s)	511
NspV	TTCGAA	1 cut(s)	236
PaeR7I	CTCGAG	1 cut(s)	198
PcsI	WCGNNNNNNNCGW	2 cut(s)	630, 759
PflFI	GACNNNGTC	1 cut(s)	661
PfoI	TCCNGGA	1 cut(s)	113
PkrI	GCNGC	4 cut(s)	24, 196, 217, 679
PleI	GAGTC	2 cut(s)	41, 779
PpsI	GAGTC	2 cut(s)	41, 779
PspN4I	GGNNCC	1 cut(s)	172
PspPI	GGNCC	1 cut(s)	69
PspXI	VCTCGAGB	1 cut(s)	198
PstNI	CAGNNNCTG	1 cut(s)	531
PsuI	RGATCY	1 cut(s)	805
PsyI	GACNNNGTC	1 cut(s)	661
RsaI	GTAC	2 cut(s)	767, 782
RsaNI	GTAC	2 cut(s)	766, 781
RseI	CAYNNNNRTG	1 cut(s)	653
SaqAI	TTAA	2 cut(s)	362, 593
SatI	GCNGC	4 cut(s)	23, 195, 216, 678
Sau3AI	GATC	5 cut(s)	132, 294, 604, 634, 805
Sau96I	GGNCC	1 cut(s)	69
ScaI	AGTACT	1 cut(s)	767
SchI	GAGTC	2 cut(s)	42, 779
ScrFI	CCNGG	2 cut(s)	115, 552
SfaNI	GCATC	3 cut(s)	496, 543, 784
SfcI	CTRYAG	1 cut(s)	375
Sfr274I	CTCGAG	1 cut(s)	198
SfuI	TTCGAA	1 cut(s)	236
SinI	GGWCC	1 cut(s)	69
SlaI	CTCGAG	1 cut(s)	198
SmiMI	CAYNNNNRTG	1 cut(s)	653
SmlI	CTYRAG	1 cut(s)	198
SmoI	CTYRAG	1 cut(s)	198
Sse9I	AATT	4 cut(s)	364, 393, 469, 698
SspMI	CTAG	3 cut(s)	390, 638, 813
StyD4I	CCNGG	2 cut(s)	113, 550
TaaI	ACNGT	1 cut(s)	425
TaiI	ACGT	1 cut(s)	525
TaqI	TCGA	4 cut(s)	199, 236, 501, 737
TaqII	GACCGA	1 cut(s)	563
TasI	AATT	4 cut(s)	364, 393, 469, 698
TatI	WGTACW	1 cut(s)	765
Tru1I	TTAA	2 cut(s)	362, 593
Tru9I	TTAA	2 cut(s)	362, 593
TscAI	CASTG	2 cut(s)	424, 587
TseFI	GTSAC	3 cut(s)	419, 663, 691
TseI	GCWGC	4 cut(s)	22, 194, 215, 677
Tsp45I	GTSAC	3 cut(s)	419, 663, 691
TspDTI	ATGAA	3 cut(s)	417, 551, 764
TspGWI	ACGGA	1 cut(s)	768
TspRI	CASTG	2 cut(s)	424, 587
Tth111I	GACNNNGTC	1 cut(s)	661
VpaK11BI	GGWCC	1 cut(s)	69
XapI	RAATTY	2 cut(s)	364, 698
XcmI	CCANNNNNNNNNTGG	1 cut(s)	117
XhoI	CTCGAG	1 cut(s)	198
XspI	CTAG	3 cut(s)	390, 638, 813
ZraI	GACGTC	1 cut(s)	523
ZrmI	AGTACT	1 cut(s)	767
Zsp2I	ATGCAT	1 cut(s)	511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.