Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0005037

Physical Location & Seq

Genomic Coordinates Reverse (-)

86538987 .. 86539833

Gene Structure 847 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G049960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGGACTTCAATCACAGAAGCACGAAAAGAGGGTCTTGGCCGAGAAAGAAAGCAAGTTCAAGCAGAGGAGCAGCAGCAACAACAACACCAAAAGCAAGTTTGTTGGGGTGAGACAGAGGCCGTCAGGGAAATGGGTGGCAGAGATCAAGGACACAACAAAGAAGATTAGAATGTGGCTTGGAACATTTGAAACTGCCGAGGAAGCCGCTCGAGCTTATGATGAAGCTGCGTGCCTTCTTCGTGGTTCGAATACCAGAACCAACTTTACCAGTAGTCATGTTCCTTCAAATTCTCCACTGTCTTTGAAAATCAAGAACCTCCTCAACCACAAAAAGACCTTGAAACAACAAAGCCCTTCAACCCCCAACACCATAAAAACCACCCCTAAAGCTAGTACTAGAATTAGTAGTACTATTACTGATAACAATATTCATAGTTCTAGTTACTACAATGCTAATTGCAGCTCTCTGCCTAGTTTCAAATCCCAGAGCATTGAGGTCTCAGGTGATGCATATAGACCAGACCTCAGCAACTGCATTGGGGATCTTCAAGTACCGGCTATGTTCCACTTAGATCAACCATGGCAATTCTTAAGCGGGATTGATCAGCTTCCGCATAACCATGAAGGGCTTGCAGCAGAGCCAAATCAGCCGACAGAATTCGAACACGCAGAGGTAGAAAGACAGATAACTTCTGCTTCATTTTATGCAATGAACGAAGTCAACGATGATGCTCTGTGGGATCTTCCTAGTCTGTCTCAGTTGTTCTGCCTTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009791 GO:0009877 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0035864 GO:0035865 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048519 GO:0048523 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0080090 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

259

Amino Acids

28.95

Weight (kDa)

8.6

Isoelectric Point (pI)

55.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	32 - 82	1e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19790
fragaria_vesca	FvH4_6g02490
malus_domestica	MD03G1004500.v1.1 MD11G1005200.v1.1 MD12G1004600.v1.1 MD14G1003100.v1.1
prunus_persica	Prupe.6G004400_v2.0.a1 Prupe.7G004900_v2.0.a1
pyrus_communis	pycom03g00470 pycom11g00430 pycom14g00100
rosa_chinensis	RchiOBHm_Chr3g0450351 RchiOBHm_Chr5g0083271
rosa_laevigata	RLG00000025736 RLG00000037025
rosa_multiflora	Rmu_sc0000330.1_g000004 Rmu_sc0011792.1_g000007
rosa_roxburghii	Rroxscaffold_1G00001220 Rroxscaffold_6G00428080
rosa_rugosa	Rorug02G0627100.1 Rorug05G0483900
rosa_samantha	Rh3AG027500 Rh3BG028200 Rh3CG026900 Rh3DG028100 Rh5BG560600 Rh5CG583300 Rh5DG569900
rosa_wichuraiana	Rw3G002140 Rw5G049960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	209
AciI	CCGC	3 cut(s)	207, 597, 614
AclWI	GGATC	2 cut(s)	552, 750
AcoI	YGGCCR	1 cut(s)	39
AcsI	RAATTY	2 cut(s)	289, 659
AfaI	GTAC	3 cut(s)	397, 412, 555
AflII	CTTAAG	1 cut(s)	592
AgsI	TTSAA	9 cut(s)	11, 61, 191, 288, 307, 343, 360, 481, 551
AluBI	AGCT	5 cut(s)	215, 227, 392, 465, 610
AluI	AGCT	5 cut(s)	215, 227, 392, 465, 610
Alw26I	GTCTC	3 cut(s)	106, 505, 762
AlwI	GGATC	2 cut(s)	552, 750
AlwNI	CAGNNNCTG	1 cut(s)	534
Ama87I	CYCGRG	1 cut(s)	210
AoxI	GGCC	2 cut(s)	39, 119
ApeKI	GCWGC	5 cut(s)	72, 75, 227, 462, 635
ApoI	RAATTY	2 cut(s)	289, 659
ArsI	GACNNNNNNTTYG	2 cut(s)	18, 50
AsuHPI	GGTGA	2 cut(s)	121, 518
AsuII	TTCGAA	2 cut(s)	248, 663
AvaI	CYCGRG	1 cut(s)	210
BbvCI	CCTCAGC	1 cut(s)	527
BbvI	GCAGC	5 cut(s)	84, 87, 214, 474, 647
BceAI	ACGGC	1 cut(s)	106
BclI	TGATCA	1 cut(s)	604
BcoDI	GTCTC	3 cut(s)	106, 505, 762
BfaI	CTAG	5 cut(s)	393, 399, 441, 474, 750
BfrI	CTTAAG	1 cut(s)	592
BisI	GCNGC	6 cut(s)	73, 76, 207, 228, 463, 636
BlsI	GCNGC	6 cut(s)	74, 77, 208, 229, 464, 637
BmcAI	AGTACT	2 cut(s)	397, 412
BmeT110I	CYCGRG	1 cut(s)	210
BmsI	GCATC	2 cut(s)	499, 721
Bpu10I	CCTNAGC	1 cut(s)	527
Bpu14I	TTCGAA	2 cut(s)	248, 663
BsaI	GGTCTC	1 cut(s)	505
BsaJI	CCNNGG	3 cut(s)	198, 581, 772
Bse118I	RCCGGY	1 cut(s)	556
Bse1I	ACTGG	1 cut(s)	270
Bse3DI	GCAATG	1 cut(s)	717
BseDI	CCNNGG	3 cut(s)	198, 581, 772
BseMI	GCAATG	1 cut(s)	717
BseMII	CTCAG	3 cut(s)	516, 541, 773
BseNI	ACTGG	1 cut(s)	270
BseRI	GAGGAG	2 cut(s)	82, 311
BseXI	GCAGC	5 cut(s)	84, 87, 214, 474, 647
BshFI	GGCC	2 cut(s)	41, 121
BsiHKCI	CYCGRG	1 cut(s)	210
BsiSI	CCGG	1 cut(s)	557
BslFI	GGGAC	1 cut(s)	18
BsmAI	GTCTC	3 cut(s)	106, 505, 762
BsmFI	GGGAC	1 cut(s)	18
BsnI	GGCC	2 cut(s)	41, 121
Bso31I	GGTCTC	1 cut(s)	505
BsoBI	CYCGRG	1 cut(s)	210
Bsp119I	TTCGAA	2 cut(s)	248, 663
Bsp143I	GATC	5 cut(s)	144, 544, 574, 604, 742
Bsp19I	CCATGG	1 cut(s)	581
BspACI	CCGC	3 cut(s)	207, 597, 614
BspANI	GGCC	2 cut(s)	41, 121
BspCNI	CTCAG	3 cut(s)	515, 540, 772
BspPI	GGATC	2 cut(s)	552, 750
BspT104I	TTCGAA	2 cut(s)	248, 663
BspTI	CTTAAG	1 cut(s)	592
BspTNI	GGTCTC	1 cut(s)	505
BsrBI	CCGCTC	1 cut(s)	209
BsrDI	GCAATG	1 cut(s)	717
BsrFI	RCCGGY	1 cut(s)	556
BsrI	ACTGG	1 cut(s)	270
BssAI	RCCGGY	1 cut(s)	556
BssECI	CCNNGG	3 cut(s)	198, 581, 772
BssMI	GATC	5 cut(s)	144, 544, 574, 604, 742
BssT1I	CCWWGG	2 cut(s)	581, 772
Bst4CI	ACNGT	1 cut(s)	300
BstAFI	CTTAAG	1 cut(s)	592
BstBI	TTCGAA	2 cut(s)	248, 663
BstC8I	GCNNGC	2 cut(s)	232, 633
BstDEI	CTNAG	4 cut(s)	502, 527, 571, 759
BstDSI	CCRYGG	1 cut(s)	581
BstKTI	GATC	5 cut(s)	147, 547, 577, 607, 745
BstMAI	GTCTC	3 cut(s)	106, 505, 762
BstMBI	GATC	5 cut(s)	144, 544, 574, 604, 742
BstMWI	GCNNNNNNNGC	3 cut(s)	203, 212, 649
BstV1I	GCAGC	5 cut(s)	84, 87, 214, 474, 647
BstX2I	RGATCY	2 cut(s)	544, 742
BstYI	RGATCY	2 cut(s)	544, 742
BsuRI	GGCC	2 cut(s)	41, 121
BtgI	CCRYGG	1 cut(s)	581
BtsIMutI	CAGTG	1 cut(s)	296
Cac8I	GCNNGC	2 cut(s)	232, 633
CaiI	CAGNNNCTG	1 cut(s)	534
Cfr10I	RCCGGY	1 cut(s)	556
Csp6I	GTAC	3 cut(s)	396, 411, 554
CspCI	CAANNNNNGTGG	2 cut(s)	285, 320
CviAII	CATG	3 cut(s)	278, 582, 623
CviQI	GTAC	3 cut(s)	396, 411, 554
DdeI	CTNAG	4 cut(s)	502, 527, 571, 759
DpnI	GATC	5 cut(s)	146, 546, 576, 606, 744
DpnII	GATC	5 cut(s)	144, 544, 574, 604, 742
EaeI	YGGCCR	1 cut(s)	39
Eco130I	CCWWGG	2 cut(s)	581, 772
Eco31I	GGTCTC	1 cut(s)	505
Eco88I	CYCGRG	1 cut(s)	210
EcoRI	GAATTC	1 cut(s)	659
EcoT14I	CCWWGG	2 cut(s)	581, 772
EcoT22I	ATGCAT	1 cut(s)	514
ErhI	CCWWGG	2 cut(s)	581, 772
FaeI	CATG	3 cut(s)	281, 585, 626
FalI	AAGNNNNNCTT	2 cut(s)	20, 52
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	3 cut(s)	277, 581, 622
FauI	CCCGC	1 cut(s)	590
FbaI	TGATCA	1 cut(s)	604
Fnu4HI	GCNGC	6 cut(s)	73, 76, 207, 228, 463, 636
Fsp4HI	GCNGC	6 cut(s)	73, 76, 207, 228, 463, 636
FspBI	CTAG	5 cut(s)	393, 399, 441, 474, 750
GluI	GCNGC	6 cut(s)	73, 76, 207, 228, 463, 636
HaeIII	GGCC	2 cut(s)	41, 121
HapII	CCGG	1 cut(s)	557
Hin1II	CATG	3 cut(s)	281, 585, 626
HincII	GTYRAC	1 cut(s)	724
HindII	GTYRAC	1 cut(s)	724
HpaII	CCGG	1 cut(s)	557
HphI	GGTGA	2 cut(s)	121, 518
Hpy166II	GTNNAC	1 cut(s)	724
Hpy188III	TCNNGA	1 cut(s)	313
Hpy8I	GTNNAC	1 cut(s)	724
HpyAV	CCTTC	4 cut(s)	245, 294, 366, 620
HpyCH4III	ACNGT	1 cut(s)	300
HpyCH4V	TGCA	5 cut(s)	462, 512, 537, 635, 710
HpyF10VI	GCNNNNNNNGC	3 cut(s)	203, 212, 649
HpyF3I	CTNAG	4 cut(s)	502, 527, 571, 759
Hsp92II	CATG	3 cut(s)	281, 585, 626
Ksp22I	TGATCA	1 cut(s)	604
Kzo9I	GATC	5 cut(s)	144, 544, 574, 604, 742
LmnI	GCTCC	1 cut(s)	69
LpnPI	CCDG	7 cut(s)	111, 268, 283, 489, 500, 534, 570
Lsp1109I	GCAGC	5 cut(s)	84, 87, 214, 474, 647
LweI	GCATC	2 cut(s)	499, 721
MaeI	CTAG	5 cut(s)	393, 399, 441, 474, 750
MaeIII	GTNAC	1 cut(s)	443
MalI	GATC	5 cut(s)	146, 546, 576, 606, 744
MbiI	CCGCTC	1 cut(s)	209
MboI	GATC	5 cut(s)	144, 544, 574, 604, 742
MboII	GAAGA	4 cut(s)	175, 230, 539, 737
MflI	RGATCY	2 cut(s)	544, 742
MluCI	AATT	5 cut(s)	289, 402, 457, 587, 659
MnlI	CCTC	9 cut(s)	24, 60, 111, 193, 329, 332, 490, 536, 667
Mph1103I	ATGCAT	1 cut(s)	514
MseI	TTAA	1 cut(s)	593
MslI	CAYNNNNRTG	1 cut(s)	621
MspCI	CTTAAG	1 cut(s)	592
MspI	CCGG	1 cut(s)	557
MwoI	GCNNNNNNNGC	3 cut(s)	203, 212, 649
NcoI	CCATGG	1 cut(s)	581
NdeII	GATC	5 cut(s)	144, 544, 574, 604, 742
NlaIII	CATG	3 cut(s)	281, 585, 626
NmeAIII	GCCGAG	2 cut(s)	67, 223
NsiI	ATGCAT	1 cut(s)	514
NspV	TTCGAA	2 cut(s)	248, 663
PaeR7I	CTCGAG	1 cut(s)	210
PcsI	WCGNNNNNNNCGW	1 cut(s)	723
PkrI	GCNGC	6 cut(s)	74, 77, 208, 229, 464, 637
PspXI	VCTCGAGB	1 cut(s)	210
PsrI	GAACNNNNNNTAC	2 cut(s)	250, 282
PstNI	CAGNNNCTG	1 cut(s)	534
PsuI	RGATCY	2 cut(s)	544, 742
RsaI	GTAC	3 cut(s)	397, 412, 555
RsaNI	GTAC	3 cut(s)	396, 411, 554
RseI	CAYNNNNRTG	1 cut(s)	621
SaqAI	TTAA	1 cut(s)	593
SatI	GCNGC	6 cut(s)	73, 76, 207, 228, 463, 636
Sau3AI	GATC	5 cut(s)	144, 544, 574, 604, 742
ScaI	AGTACT	2 cut(s)	397, 412
SfaNI	GCATC	2 cut(s)	499, 721
Sfr274I	CTCGAG	1 cut(s)	210
SfuI	TTCGAA	2 cut(s)	248, 663
SlaI	CTCGAG	1 cut(s)	210
SmiMI	CAYNNNNRTG	1 cut(s)	621
SmlI	CTYRAG	2 cut(s)	210, 592
SmoI	CTYRAG	2 cut(s)	210, 592
Sse9I	AATT	5 cut(s)	289, 402, 457, 587, 659
SsiI	CCGC	3 cut(s)	207, 597, 614
SspI	AATATT	1 cut(s)	430
SspMI	CTAG	5 cut(s)	393, 399, 441, 474, 750
StyI	CCWWGG	2 cut(s)	581, 772
TaaI	ACNGT	1 cut(s)	300
TaqI	TCGA	3 cut(s)	211, 248, 663
TasI	AATT	5 cut(s)	289, 402, 457, 587, 659
TatI	WGTACW	2 cut(s)	395, 410
TauI	GCSGC	1 cut(s)	209
Tru1I	TTAA	1 cut(s)	593
Tru9I	TTAA	1 cut(s)	593
TscAI	CASTG	1 cut(s)	303
TseI	GCWGC	5 cut(s)	72, 75, 227, 462, 635
TspDTI	ATGAA	5 cut(s)	237, 422, 639, 690, 728
TspRI	CASTG	1 cut(s)	303
Vha464I	CTTAAG	1 cut(s)	592
XapI	RAATTY	2 cut(s)	289, 659
XhoI	CTCGAG	1 cut(s)	210
XspI	CTAG	5 cut(s)	393, 399, 441, 474, 750
ZrmI	AGTACT	2 cut(s)	397, 412
Zsp2I	ATGCAT	1 cut(s)	514

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.