Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0005037

Physical Location & Seq

Genomic Coordinates Forward (+)

555512 .. 556845

Gene Structure 1334 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G004900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGAATTTCAGTTTCAACAGCATAACCAAATTTGCTTCCCAGCTGCAGCTAACAAAGCTGTAGGCATTCCAATGGCCAAAGTGGGAAAGTTGAAGGGAAGAACTAGAAGCAACAACGCAAACAAGTTTGTTGGTGTGAGGCAGAGGCCTTCAGGGAGATGGGTAGCTGAGATCAAAGACACCACACAGAAGATAAGAATGTGGCTTGGAACCTTTGAGACTGCCGAAGAGGCTGCTCGAGCTTACGATGAAGCTGCCTGCCTTCTTCGCGGCTCAAATACTCGAACCAACTTTATTACACATGTCTCTTTGGATTCTCCTCTTGCTTCTCGAATCCGAAATCTACTTAACACCAAAAAAGGAGGATCAAGCAAACAAGGAATAGAGCAAACTAGTTCTAGTATTGCTTATCATGATGATATGAATGCCTCACATCCTCCCATATCTTCAACTACTAGTAGTGACAAGTACATGACTAGCAATATTAGGACTGCTAGTACAAGCACTTGTAATTCCACCAGCAGTGGCAGTGATACACTTTCTAGTGAGGTGTTTCAAGATTCTCAGCTGTTTGATGATGTCTACAGACCAGATTTGAGACACTGCAATGAGGAATTTGAGTTGAGCTCTTCTGCTTCTCAATCCAATCTTTCATGGGATGGATTTCAAACCGGGGTTGACGGGTTCTCATTTGCCCAACAAGTGTTTGATTTGCCGAAACATCAGGCAGCTACTGCTGCTTCTTCTTCTACTACTACTACTACTACTATTACTACAGCAGCTGAAGCTGATTCGGAGTTTCTGGAATTCGAAAGGATGAAAGTTGAAAGGCAGATATCAGCTTCCCTCTATGCAATGAATGGAGTGCAAGAGTATATGGATACAGTTTATGATCCTAACGAACCCTCTTGGGATCTTCCACCATTGTGCCCTTTGTTCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009791 GO:0009877 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0035864 GO:0035865 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048518 GO:0048522 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0080090 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

315

Amino Acids

34.64

Weight (kDa)

5.44

Isoelectric Point (pI)

47.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19790
fragaria_vesca	FvH4_6g02490
malus_domestica	MD03G1004500.v1.1 MD11G1005200.v1.1 MD12G1004600.v1.1 MD14G1003100.v1.1
prunus_persica	Prupe.6G004400_v2.0.a1 Prupe.7G004900_v2.0.a1
pyrus_communis	pycom03g00470 pycom11g00430 pycom14g00100
rosa_chinensis	RchiOBHm_Chr3g0450351 RchiOBHm_Chr5g0083271
rosa_laevigata	RLG00000025736 RLG00000037025
rosa_multiflora	Rmu_sc0000330.1_g000004 Rmu_sc0011792.1_g000007
rosa_roxburghii	Rroxscaffold_1G00001220 Rroxscaffold_6G00428080
rosa_rugosa	Rorug02G0627100.1 Rorug05G0483900
rosa_samantha	Rh3AG027500 Rh3BG028200 Rh3CG026900 Rh3DG028100 Rh5BG560600 Rh5CG583300 Rh5DG569900
rosa_wichuraiana	Rw3G002140 Rw5G049960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	582
AccII	CGCG	1 cut(s)	270
AciI	CCGC	1 cut(s)	270
AclWI	GGATC	3 cut(s)	373, 887, 921
AcoI	YGGCCR	1 cut(s)	75
AcsI	RAATTY	4 cut(s)	5, 30, 614, 806
AcuI	CTGAAG	2 cut(s)	135, 804
AfaI	GTAC	2 cut(s)	470, 499
AflIII	ACRYGT	1 cut(s)	301
AgsI	TTSAA	6 cut(s)	17, 94, 450, 557, 668, 827
AhlI	ACTAGT	2 cut(s)	392, 455
AleI	CACNNNNGTG	1 cut(s)	925
Alw21I	GWGCWC	1 cut(s)	629
Alw26I	GTCTC	3 cut(s)	212, 310, 592
AlwI	GGATC	3 cut(s)	373, 887, 921
AlwNI	CAGNNNCTG	2 cut(s)	734, 782
Ama87I	CYCGRG	1 cut(s)	237
AoxI	GGCC	2 cut(s)	75, 146
ApeKI	GCWGC	7 cut(s)	44, 47, 233, 254, 728, 737, 779
ApoI	RAATTY	4 cut(s)	5, 30, 614, 806
AsuC2I	CCSGG	1 cut(s)	673
AsuII	TTCGAA	1 cut(s)	810
AvaI	CYCGRG	1 cut(s)	237
BaeGI	GKGCMC	1 cut(s)	932
BalI	TGGCCA	1 cut(s)	77
BanII	GRGCYC	1 cut(s)	629
Bbv12I	GWGCWC	1 cut(s)	629
BbvI	GCAGC	7 cut(s)	31, 59, 220, 241, 724, 740, 791
BccI	CCATC	2 cut(s)	153, 653
BcgI	CGANNNNNNTGC	4 cut(s)	215, 236, 249, 270
BciVI	GTATCC	1 cut(s)	874
BcnI	CCSGG	1 cut(s)	673
BcoDI	GTCTC	3 cut(s)	212, 310, 592
BcuI	ACTAGT	2 cut(s)	392, 455
BfaI	CTAG	7 cut(s)	105, 393, 399, 456, 477, 495, 543
BfmI	CTRYAG	4 cut(s)	45, 60, 583, 774
BfuI	GTATCC	1 cut(s)	874
BglI	GCCNNNNNGGC	1 cut(s)	230
BisI	GCNGC	8 cut(s)	45, 48, 234, 255, 271, 729, 738, 780
BlsI	GCNGC	8 cut(s)	46, 49, 235, 256, 272, 730, 739, 781
Bme1390I	CCNGG	1 cut(s)	673
BmeT110I	CYCGRG	1 cut(s)	237
BmiI	GGNNCC	1 cut(s)	211
BmrFI	CCNGG	1 cut(s)	673
BplI	GAGNNNNNCTC	2 cut(s)	611, 643
Bpu14I	TTCGAA	1 cut(s)	810
BpuMI	CCSGG	1 cut(s)	673
BsaJI	CCNNGG	1 cut(s)	672
Bse3DI	GCAATG	2 cut(s)	613, 861
BseDI	CCNNGG	1 cut(s)	672
BseGI	GGATG	3 cut(s)	433, 664, 822
BseMI	GCAATG	2 cut(s)	613, 861
BseMII	CTCAG	2 cut(s)	159, 578
BseRI	GAGGAG	1 cut(s)	309
BseSI	GKGCMC	1 cut(s)	932
BseXI	GCAGC	7 cut(s)	31, 59, 220, 241, 724, 740, 791
BseYI	CCCAGC	1 cut(s)	40
Bsh1236I	CGCG	1 cut(s)	270
BshFI	GGCC	2 cut(s)	77, 148
BsiHKAI	GWGCWC	1 cut(s)	629
BsiHKCI	CYCGRG	1 cut(s)	237
BsiSI	CCGG	1 cut(s)	672
BsmAI	GTCTC	3 cut(s)	212, 310, 592
BsmI	GAATGC	2 cut(s)	66, 430
BsnI	GGCC	2 cut(s)	77, 148
BsoBI	CYCGRG	1 cut(s)	237
Bsp119I	TTCGAA	1 cut(s)	810
Bsp1286I	GDGCHC	2 cut(s)	629, 932
Bsp143I	GATC	4 cut(s)	171, 365, 892, 913
BspACI	CCGC	1 cut(s)	270
BspANI	GGCC	2 cut(s)	77, 148
BspCNI	CTCAG	2 cut(s)	160, 577
BspFNI	CGCG	1 cut(s)	270
BspHI	TCATGA	1 cut(s)	412
BspLI	GGNNCC	1 cut(s)	211
BspMAI	CTGCAG	1 cut(s)	49
BspPI	GGATC	3 cut(s)	373, 887, 921
BspQI	GCTCTTC	1 cut(s)	634
BspT104I	TTCGAA	1 cut(s)	810
BsrDI	GCAATG	2 cut(s)	613, 861
BssECI	CCNNGG	1 cut(s)	672
BssMI	GATC	4 cut(s)	171, 365, 892, 913
Bst4CI	ACNGT	1 cut(s)	886
Bst6I	CTCTTC	2 cut(s)	222, 634
BstAPI	GCANNNNNTGC	1 cut(s)	734
BstBI	TTCGAA	1 cut(s)	810
BstC8I	GCNNGC	1 cut(s)	259
BstDEI	CTNAG	2 cut(s)	168, 564
BstF5I	GGATG	3 cut(s)	433, 664, 822
BstFNI	CGCG	1 cut(s)	270
BstKTI	GATC	4 cut(s)	174, 368, 895, 916
BstMAI	GTCTC	3 cut(s)	212, 310, 592
BstMBI	GATC	4 cut(s)	171, 365, 892, 913
BstMWI	GCNNNNNNNGC	7 cut(s)	56, 230, 239, 267, 734, 737, 785
BstNSI	RCATGY	1 cut(s)	305
BstSCI	CCNGG	1 cut(s)	671
BstSFI	CTRYAG	4 cut(s)	45, 60, 583, 774
BstSLI	GKGCMC	1 cut(s)	932
BstUI	CGCG	1 cut(s)	270
BstV1I	GCAGC	7 cut(s)	31, 59, 220, 241, 724, 740, 791
BstX2I	RGATCY	1 cut(s)	913
BstYI	RGATCY	1 cut(s)	913
BsuI	GTATCC	1 cut(s)	874
BsuRI	GGCC	2 cut(s)	77, 148
BtsCI	GGATG	3 cut(s)	433, 664, 822
BtsI	GCAGTG	3 cut(s)	529, 535, 601
BtsIMutI	CAGTG	3 cut(s)	529, 535, 601
Cac8I	GCNNGC	1 cut(s)	259
CaiI	CAGNNNCTG	2 cut(s)	734, 782
CciI	TCATGA	1 cut(s)	412
Csp6I	GTAC	2 cut(s)	469, 498
CviAII	CATG	4 cut(s)	302, 413, 472, 654
CviQI	GTAC	2 cut(s)	469, 498
DdeI	CTNAG	2 cut(s)	168, 564
DpnI	GATC	4 cut(s)	173, 367, 894, 915
DpnII	GATC	4 cut(s)	171, 365, 892, 913
EaeI	YGGCCR	1 cut(s)	75
Eam1104I	CTCTTC	2 cut(s)	222, 634
EarI	CTCTTC	2 cut(s)	222, 634
Ecl136II	GAGCTC	1 cut(s)	627
Eco147I	AGGCCT	1 cut(s)	148
Eco24I	GRGCYC	1 cut(s)	629
Eco32I	GATATC	1 cut(s)	837
Eco53kI	GAGCTC	1 cut(s)	627
Eco57I	CTGAAG	2 cut(s)	135, 804
Eco88I	CYCGRG	1 cut(s)	237
EcoICRI	GAGCTC	1 cut(s)	627
EcoRI	GAATTC	1 cut(s)	806
EcoRV	GATATC	1 cut(s)	837
EcoT38I	GRGCYC	1 cut(s)	629
FaeI	CATG	4 cut(s)	305, 416, 475, 657
FatI	CATG	4 cut(s)	301, 412, 471, 653
FblI	GTMKAC	1 cut(s)	582
Fnu4HI	GCNGC	8 cut(s)	45, 48, 234, 255, 271, 729, 738, 780
FokI	GGATG	3 cut(s)	420, 671, 829
FriOI	GRGCYC	1 cut(s)	629
Fsp4HI	GCNGC	8 cut(s)	45, 48, 234, 255, 271, 729, 738, 780
FspBI	CTAG	7 cut(s)	105, 393, 399, 456, 477, 495, 543
GluI	GCNGC	8 cut(s)	45, 48, 234, 255, 271, 729, 738, 780
GsaI	CCCAGC	1 cut(s)	44
HaeIII	GGCC	2 cut(s)	77, 148
HapII	CCGG	1 cut(s)	672
Hin1II	CATG	4 cut(s)	305, 416, 475, 657
HincII	GTYRAC	1 cut(s)	679
HindII	GTYRAC	1 cut(s)	679
HinfI	GANTC	4 cut(s)	314, 333, 560, 791
HpaII	CCGG	1 cut(s)	672
Hpy166II	GTNNAC	2 cut(s)	583, 679
Hpy188I	TCNGA	2 cut(s)	338, 796
Hpy188III	TCNNGA	4 cut(s)	330, 413, 557, 803
Hpy8I	GTNNAC	2 cut(s)	583, 679
HpyAV	CCTTC	3 cut(s)	88, 159, 272
HpyCH4III	ACNGT	1 cut(s)	886
HpyCH4V	TGCA	4 cut(s)	47, 606, 854, 868
HpyF10VI	GCNNNNNNNGC	7 cut(s)	56, 230, 239, 267, 734, 737, 785
HpyF3I	CTNAG	2 cut(s)	168, 564
Hsp92II	CATG	4 cut(s)	305, 416, 475, 657
Kzo9I	GATC	4 cut(s)	171, 365, 892, 913
LguI	GCTCTTC	1 cut(s)	634
LpnPI	CCDG	8 cut(s)	54, 138, 271, 532, 603, 685, 710, 788
Lsp1109I	GCAGC	7 cut(s)	31, 59, 220, 241, 724, 740, 791
MaeI	CTAG	7 cut(s)	105, 393, 399, 456, 477, 495, 543
MaeIII	GTNAC	1 cut(s)	461
MalI	GATC	4 cut(s)	173, 367, 894, 915
MboI	GATC	4 cut(s)	171, 365, 892, 913
MboII	GAAGA	9 cut(s)	111, 202, 239, 257, 438, 621, 735, 738, 908
MflI	RGATCY	1 cut(s)	913
MhlI	GDGCHC	2 cut(s)	629, 932
MlsI	TGGCCA	1 cut(s)	77
MluCI	AATT	5 cut(s)	5, 30, 511, 614, 806
MluNI	TGGCCA	1 cut(s)	77
Mox20I	TGGCCA	1 cut(s)	77
MscI	TGGCCA	1 cut(s)	77
MseI	TTAA	1 cut(s)	348
MslI	CAYNNNNRTG	3 cut(s)	71, 606, 925
Msp20I	TGGCCA	1 cut(s)	77
MspA1I	CMGCKG	3 cut(s)	44, 568, 782
MspI	CCGG	1 cut(s)	672
MspR9I	CCNGG	1 cut(s)	673
Mva1269I	GAATGC	2 cut(s)	66, 430
MvnI	CGCG	1 cut(s)	270
MwoI	GCNNNNNNNGC	7 cut(s)	56, 230, 239, 267, 734, 737, 785
NciI	CCSGG	1 cut(s)	673
NdeII	GATC	4 cut(s)	171, 365, 892, 913
NlaIII	CATG	4 cut(s)	305, 416, 475, 657
NlaIV	GGNNCC	1 cut(s)	211
NmuCI	GTSAC	1 cut(s)	461
NspI	RCATGY	1 cut(s)	305
NspV	TTCGAA	1 cut(s)	810
OliI	CACNNNNGTG	1 cut(s)	925
PaeR7I	CTCGAG	1 cut(s)	237
PagI	TCATGA	1 cut(s)	412
PceI	AGGCCT	1 cut(s)	148
PciI	ACATGT	1 cut(s)	301
PciSI	GCTCTTC	1 cut(s)	634
PctI	GAATGC	2 cut(s)	66, 430
PfeI	GAWTC	4 cut(s)	314, 333, 560, 791
PkrI	GCNGC	8 cut(s)	46, 49, 235, 256, 272, 730, 739, 781
PscI	ACATGT	1 cut(s)	301
Psp124BI	GAGCTC	1 cut(s)	629
PspFI	CCCAGC	1 cut(s)	40
PspN4I	GGNNCC	1 cut(s)	211
PspXI	VCTCGAGB	1 cut(s)	237
PstI	CTGCAG	1 cut(s)	49
PstNI	CAGNNNCTG	2 cut(s)	734, 782
PsuI	RGATCY	1 cut(s)	913
PvuII	CAGCTG	3 cut(s)	44, 568, 782
RsaI	GTAC	2 cut(s)	470, 499
RsaNI	GTAC	2 cut(s)	469, 498
RseI	CAYNNNNRTG	3 cut(s)	71, 606, 925
SacI	GAGCTC	1 cut(s)	629
SapI	GCTCTTC	1 cut(s)	634
SaqAI	TTAA	1 cut(s)	348
SatI	GCNGC	8 cut(s)	45, 48, 234, 255, 271, 729, 738, 780
Sau3AI	GATC	4 cut(s)	171, 365, 892, 913
ScrFI	CCNGG	1 cut(s)	673
SduI	GDGCHC	2 cut(s)	629, 932
SfcI	CTRYAG	4 cut(s)	45, 60, 583, 774
Sfr274I	CTCGAG	1 cut(s)	237
SfuI	TTCGAA	1 cut(s)	810
SlaI	CTCGAG	1 cut(s)	237
SmiMI	CAYNNNNRTG	3 cut(s)	71, 606, 925
SmlI	CTYRAG	1 cut(s)	237
SmoI	CTYRAG	1 cut(s)	237
SpeI	ACTAGT	2 cut(s)	392, 455
Sse9I	AATT	5 cut(s)	5, 30, 511, 614, 806
SseBI	AGGCCT	1 cut(s)	148
SsiI	CCGC	1 cut(s)	270
SspI	AATATT	1 cut(s)	484
SspMI	CTAG	7 cut(s)	105, 393, 399, 456, 477, 495, 543
SstI	GAGCTC	1 cut(s)	629
StuI	AGGCCT	1 cut(s)	148
StyD4I	CCNGG	1 cut(s)	671
TaaI	ACNGT	1 cut(s)	886
TaqI	TCGA	4 cut(s)	238, 283, 331, 810
TasI	AATT	5 cut(s)	5, 30, 511, 614, 806
TatI	WGTACW	2 cut(s)	468, 497
TauI	GCSGC	1 cut(s)	273
TfiI	GAWTC	4 cut(s)	314, 333, 560, 791
Tru1I	TTAA	1 cut(s)	348
Tru9I	TTAA	1 cut(s)	348
TscAI	CASTG	3 cut(s)	529, 535, 608
TseFI	GTSAC	1 cut(s)	461
TseI	GCWGC	7 cut(s)	44, 47, 233, 254, 728, 737, 779
Tsp45I	GTSAC	1 cut(s)	461
TspDTI	ATGAA	5 cut(s)	264, 437, 642, 833, 872
TspRI	CASTG	3 cut(s)	529, 535, 608
XapI	RAATTY	4 cut(s)	5, 30, 614, 806
XceI	RCATGY	1 cut(s)	305
XhoI	CTCGAG	1 cut(s)	237
XmiI	GTMKAC	1 cut(s)	582
XspI	CTAG	7 cut(s)	105, 393, 399, 456, 477, 495, 543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.