RLG00000025736

ethylene-responsive transcription factor

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Reverse (-)
47957947 .. 47959445
1499 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025736

Sequence Viewer

Length: 1269 bp
ATGAGGATGAGGACTTGGTCTTACTTCAAACTTCAAGATCAGTCTGGTGCCTCCAAGTGGCAGCCATTCGTGCCTTCACCAGGGTTTTGTCAAGCGCTTGACTTGGAGAGGAAGGGGACAAGGAAACAAACAAACAGAAAAAACAGCGGGCACTTGCGCATAGAAAACTCAGAAAACCTTGCAATATATAACTCCTCAATTCCTCATCAACAACCAAAACAAGGAGATGCAGACGAGCTCTCCATTAGCATTCAGACCATAGCTAAGCTGATTAATACAAACTTGTTTGCAATTCATTTTTCCAAGTACAATCCCTTCCTTCCTATCTCGATACCTTCTTCCTCAAGTATCGAACTTCCAATAATGGAGTTTCAGTTCCAGCTGCAGAAACAGATTTCATTTCCGGCGGCGGCTCAATCACATAGAGCTTCAGGCATTCCAAGAAGCAGTAAAGGCAATAAGTTGAAGGGAGGTAGAAATAGAAGCAACAACACCAACAAGTTTGTTGGGGTGAGACAGAGACCTTCAGGGAGATGGGTAGCTGAGATCAAAGACACAACGCAAAAGATAAGGATGTGGCTTGGAACCTTTGAAACTGCTGAAGAGGCTGCTCGAGCTTACGACGAAGCTGCTTGCCTTCTTCGTGGCAACAATACTCGAACCAACTTCATCACACATGTCTCTTTGGATTCCCCTCTTGCTTCTCGAATCCAAAATCTCCTCAACACCAAAAAGCCAGGACCCAACTGCAAACAACAAATCCAAATGACTAGTAGTACTTCTTCTAGTACTGCCTCTCATCCCTCCACAGCTAAAAGTACTAGTAGCACAAGTACTAGCACTAGTTCCACTAGCAAGAGTTGCCTATCGAGTGAGGTATCGAATCAAGAGTCGTCTTATCATCAATCTTCTGATGATGATGTATACAAACCAGACTTGAGTAACTGCAATCAGCTCCCATTTGATCAGTTGAGTACTAGTACTACTATTTCTTCAAATTCTCATCAATCCAATATTTCTTGGGTTGATGGATTCTCATTTGCTCAGCAAATGTTTGCGACACCAAAAGATGAAGCTGCTTTGTCGAGCGAATTAACTTGCGCTGATGAACGTGGTGATTCGGATGAGTTGTTGGAATTCGAAAGGATGAAAGTCGAAAGACAGATATCAGCTTCATTGTATGCTATGAATGGTGTGCAAGAGTATATGGACACAGTTCATGATGCGAATGAAGCTCTTTGGGATCTTCAACCATTCTGTGCTTTGTGA

Protein Analysis

423

Amino Acids

46.96

Weight (kDa)

8.09

Isoelectric Point (pI)

47.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 167 - 216 3.2e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 158
AccB1I GGYRCC 1 cut(s) 47
AccI GTMKAC 1 cut(s) 924
AciI CCGC 3 cut(s) 147, 407, 410
AclWI GGATC 1 cut(s) 1251
AcsI RAATTY 2 cut(s) 997, 1136
AcuI CTGAAG 3 cut(s) 414, 510, 621
AfaI GTAC 7 cut(s) 308, 778, 790, 820, 835, 976, 982
AfeI AGCGCT 1 cut(s) 96
AfiI CCNNNNNNNGG 3 cut(s) 57, 80, 221
AflIII ACRYGT 1 cut(s) 676
AgsI TTSAA 6 cut(s) 28, 35, 466, 593, 996, 1250
AhlI ACTAGT 4 cut(s) 770, 821, 842, 977
AjnI CCWGG 2 cut(s) 79, 736
AloI GAACNNNNNNTCC 2 cut(s) 359, 391
Alw21I GWGCWC 1 cut(s) 240
Alw26I GTCTC 3 cut(s) 508, 514, 685
AlwI GGATC 1 cut(s) 1251
Ama87I CYCGRG 1 cut(s) 612
Aor51HI AGCGCT 1 cut(s) 96
ApeKI GCWGC 5 cut(s) 61, 382, 608, 629, 1076
ApoI RAATTY 2 cut(s) 997, 1136
ArsI GACNNNNNNTTYG 2 cut(s) 875, 907
AseI ATTAAT 1 cut(s) 273
AspLEI GCGC 3 cut(s) 97, 159, 1103
AspS9I GGNCC 1 cut(s) 740
AsuHPI GGTGA 3 cut(s) 69, 523, 1127
AsuII TTCGAA 1 cut(s) 1140
AvaI CYCGRG 1 cut(s) 612
AvaII GGWCC 1 cut(s) 740
BaeGI GKGCMC 1 cut(s) 153
BanI GGYRCC 1 cut(s) 47
BanII GRGCYC 1 cut(s) 240
BarI GAAGNNNNNNTAC 4 cut(s) 299, 331, 766, 798
Bbv12I GWGCWC 1 cut(s) 240
BbvI GCAGC 5 cut(s) 73, 369, 595, 616, 1063
BccI CCATC 2 cut(s) 528, 1022
BcgI CGANNNNNNTGC 2 cut(s) 611, 645
BciT130I CCWGG 2 cut(s) 81, 738
BclI TGATCA 1 cut(s) 964
BcoDI GTCTC 3 cut(s) 508, 514, 685
BcuI ACTAGT 4 cut(s) 770, 821, 842, 977
BfaI CTAG 7 cut(s) 771, 786, 822, 837, 843, 852, 978
BfmI CTRYAG 1 cut(s) 383
BfoI RGCGCY 1 cut(s) 98
BisI GCNGC 7 cut(s) 62, 383, 408, 411, 609, 630, 1077
BlpI GCTNAGC 2 cut(s) 264, 1044
BlsI GCNGC 7 cut(s) 63, 384, 409, 412, 610, 631, 1078
BmcAI AGTACT 6 cut(s) 778, 790, 820, 835, 976, 982
Bme1390I CCNGG 2 cut(s) 81, 738
Bme18I GGWCC 1 cut(s) 740
BmeT110I CYCGRG 1 cut(s) 612
BmgT120I GGNCC 1 cut(s) 740
BmiI GGNNCC 3 cut(s) 49, 586, 742
BmrFI CCNGG 2 cut(s) 81, 738
BmsI GCATC 2 cut(s) 217, 1213
Bpu1102I GCTNAGC 2 cut(s) 264, 1044
Bpu14I TTCGAA 1 cut(s) 1140
BpuEI CTTGAG 2 cut(s) 328, 958
BsaI GGTCTC 1 cut(s) 514
BsaJI CCNNGG 1 cut(s) 80
BsaXI ACNNNNNCTCC 4 cut(s) 224, 254, 359, 389
Bsc4I CCNNNNNNNGG 3 cut(s) 57, 80, 221
BseBI CCWGG 2 cut(s) 81, 738
BseDI CCNNGG 1 cut(s) 80
BseGI GGATG 5 cut(s) 12, 579, 799, 1129, 1152
BseLI CCNNNNNNNGG 3 cut(s) 57, 80, 221
BseMII CTCAG 3 cut(s) 183, 534, 1058
BseRI GAGGAG 2 cut(s) 184, 710
BseSI GKGCMC 1 cut(s) 153
BseXI GCAGC 5 cut(s) 73, 369, 595, 616, 1063
BshNI GGYRCC 1 cut(s) 47
BsiHKAI GWGCWC 1 cut(s) 240
BsiHKCI CYCGRG 1 cut(s) 612
BsiSI CCGG 1 cut(s) 404
BslFI GGGAC 1 cut(s) 130
BslI CCNNNNNNNGG 3 cut(s) 57, 80, 221
BsmAI GTCTC 3 cut(s) 508, 514, 685
BsmFI GGGAC 1 cut(s) 130
BsmI GAATGC 2 cut(s) 249, 435
Bso31I GGTCTC 1 cut(s) 514
BsoBI CYCGRG 1 cut(s) 612
Bsp119I TTCGAA 1 cut(s) 1140
Bsp1286I GDGCHC 2 cut(s) 153, 240
Bsp143I GATC 4 cut(s) 37, 546, 964, 1243
Bsp1720I GCTNAGC 2 cut(s) 264, 1044
BspACI CCGC 3 cut(s) 147, 407, 410
BspCNI CTCAG 3 cut(s) 182, 535, 1057
BspHI TCATGA 1 cut(s) 1219
BspLI GGNNCC 3 cut(s) 49, 586, 742
BspMAI CTGCAG 1 cut(s) 387
BspPI GGATC 1 cut(s) 1251
BspT104I TTCGAA 1 cut(s) 1140
BspT107I GGYRCC 1 cut(s) 47
BspTNI GGTCTC 1 cut(s) 514
BssECI CCNNGG 1 cut(s) 80
BssMI GATC 4 cut(s) 37, 546, 964, 1243
BssNAI GTATAC 1 cut(s) 925
Bst1107I GTATAC 1 cut(s) 925
Bst2UI CCWGG 2 cut(s) 81, 738
Bst4CI ACNGT 1 cut(s) 1216
Bst6I CTCTTC 1 cut(s) 597
BstAPI GCANNNNNTGC 1 cut(s) 861
BstBI TTCGAA 1 cut(s) 1140
BstC8I GCNNGC 2 cut(s) 149, 634
BstDEI CTNAG 4 cut(s) 169, 264, 543, 1044
BstENI CCTNNNNNAGG 1 cut(s) 78
BstF5I GGATG 5 cut(s) 12, 579, 799, 1129, 1152
BstH2I RGCGCY 1 cut(s) 98
BstHHI GCGC 3 cut(s) 97, 159, 1103
BstKTI GATC 4 cut(s) 40, 549, 967, 1246
BstMAI GTCTC 3 cut(s) 508, 514, 685
BstMBI GATC 4 cut(s) 37, 546, 964, 1243
BstMWI GCNNNNNNNGC 6 cut(s) 70, 453, 605, 614, 861, 1232
BstNI CCWGG 2 cut(s) 81, 738
BstNSI RCATGY 1 cut(s) 680
BstSCI CCNGG 2 cut(s) 79, 736
BstSFI CTRYAG 1 cut(s) 383
BstSLI GKGCMC 1 cut(s) 153
BstV1I GCAGC 5 cut(s) 73, 369, 595, 616, 1063
BstX2I RGATCY 1 cut(s) 1243
BstYI RGATCY 1 cut(s) 1243
BstZ17I GTATAC 1 cut(s) 925
BtsCI GGATG 5 cut(s) 12, 579, 799, 1129, 1152
Cac8I GCNNGC 2 cut(s) 149, 634
CciI TCATGA 1 cut(s) 1219
CfoI GCGC 3 cut(s) 97, 159, 1103
Cfr13I GGNCC 1 cut(s) 740
Csp6I GTAC 7 cut(s) 307, 777, 789, 819, 834, 975, 981
CviAII CATG 2 cut(s) 677, 1220
CviQI GTAC 7 cut(s) 307, 777, 789, 819, 834, 975, 981
DdeI CTNAG 4 cut(s) 169, 264, 543, 1044
DpnI GATC 4 cut(s) 39, 548, 966, 1245
DpnII GATC 4 cut(s) 37, 546, 964, 1243
Eam1104I CTCTTC 1 cut(s) 597
EarI CTCTTC 1 cut(s) 597
Ecl136II GAGCTC 1 cut(s) 238
Eco24I GRGCYC 1 cut(s) 240
Eco31I GGTCTC 1 cut(s) 514
Eco32I GATATC 1 cut(s) 1167
Eco47I GGWCC 1 cut(s) 740
Eco47III AGCGCT 1 cut(s) 96
Eco53kI GAGCTC 1 cut(s) 238
Eco57I CTGAAG 3 cut(s) 414, 510, 621
Eco88I CYCGRG 1 cut(s) 612
EcoICRI GAGCTC 1 cut(s) 238
EcoNI CCTNNNNNAGG 1 cut(s) 78
EcoO109I RGGNCCY 1 cut(s) 740
EcoRI GAATTC 1 cut(s) 1136
EcoRII CCWGG 2 cut(s) 79, 736
EcoRV GATATC 1 cut(s) 1167
EcoT38I GRGCYC 1 cut(s) 240
FaeI CATG 2 cut(s) 680, 1223
FaqI GGGAC 1 cut(s) 130
FatI CATG 2 cut(s) 676, 1219
FauI CCCGC 1 cut(s) 140
FbaI TGATCA 1 cut(s) 964
FblI GTMKAC 1 cut(s) 924
Fnu4HI GCNGC 7 cut(s) 62, 383, 408, 411, 609, 630, 1077
FokI GGATG 5 cut(s) 19, 586, 786, 1136, 1159
FriOI GRGCYC 1 cut(s) 240
Fsp4HI GCNGC 7 cut(s) 62, 383, 408, 411, 609, 630, 1077
FspBI CTAG 7 cut(s) 771, 786, 822, 837, 843, 852, 978
FspI TGCGCA 1 cut(s) 158
GlaI GCGC 3 cut(s) 96, 158, 1102
GluI GCNGC 7 cut(s) 62, 383, 408, 411, 609, 630, 1077
HaeII RGCGCY 1 cut(s) 98
HapII CCGG 1 cut(s) 404
HhaI GCGC 3 cut(s) 97, 159, 1103
Hin1II CATG 2 cut(s) 680, 1223
Hin6I GCGC 3 cut(s) 95, 157, 1101
HinP1I GCGC 3 cut(s) 95, 157, 1101
HinfI GANTC 6 cut(s) 689, 708, 883, 890, 1032, 1118
HpaII CCGG 1 cut(s) 404
HphI GGTGA 3 cut(s) 69, 523, 1127
Hpy166II GTNNAC 1 cut(s) 925
Hpy188I TCNGA 4 cut(s) 172, 255, 913, 1123
Hpy188III TCNNGA 5 cut(s) 35, 328, 705, 887, 1220
Hpy8I GTNNAC 1 cut(s) 925
Hpy99I CGWCG 1 cut(s) 626
HpyAV CCTTC 8 cut(s) 84, 106, 325, 329, 345, 460, 534, 647
HpyCH4III ACNGT 1 cut(s) 1216
HpyCH4IV ACGT 1 cut(s) 1111
HpyCH4V TGCA 7 cut(s) 182, 230, 290, 385, 750, 948, 1198
HpyF10VI GCNNNNNNNGC 6 cut(s) 70, 453, 605, 614, 861, 1232
HpyF3I CTNAG 4 cut(s) 169, 264, 543, 1044
HpySE526I ACGT 1 cut(s) 1111
Hsp92II CATG 2 cut(s) 680, 1223
HspAI GCGC 3 cut(s) 95, 157, 1101
Ksp22I TGATCA 1 cut(s) 964
Kzo9I GATC 4 cut(s) 37, 546, 964, 1243
LmnI GCTCC 1 cut(s) 960
Lsp1109I GCAGC 5 cut(s) 73, 369, 595, 616, 1063
LweI GCATC 2 cut(s) 217, 1213
MaeI CTAG 7 cut(s) 771, 786, 822, 837, 843, 852, 978
MaeII ACGT 1 cut(s) 1111
MaeIII GTNAC 1 cut(s) 941
MalI GATC 4 cut(s) 39, 548, 966, 1245
MboI GATC 4 cut(s) 37, 546, 964, 1243
MboII GAAGA 7 cut(s) 330, 614, 632, 774, 900, 984, 1238
MflI RGATCY 1 cut(s) 1243
MhlI GDGCHC 2 cut(s) 153, 240
MluCI AATT 5 cut(s) 198, 291, 997, 1091, 1136
MlyI GAGTC 1 cut(s) 899
MmeI TCCRAC 1 cut(s) 1113
MseI TTAA 2 cut(s) 273, 1094
MspA1I CMGCKG 2 cut(s) 147, 382
MspI CCGG 1 cut(s) 404
MspR9I CCNGG 2 cut(s) 81, 738
Mva1269I GAATGC 2 cut(s) 249, 435
MvaI CCWGG 2 cut(s) 81, 738
MwoI GCNNNNNNNGC 6 cut(s) 70, 453, 605, 614, 861, 1232
NdeII GATC 4 cut(s) 37, 546, 964, 1243
NlaIII CATG 2 cut(s) 680, 1223
NlaIV GGNNCC 3 cut(s) 49, 586, 742
NsbI TGCGCA 1 cut(s) 158
NspI RCATGY 1 cut(s) 680
NspV TTCGAA 1 cut(s) 1140
PaeR7I CTCGAG 1 cut(s) 612
PagI TCATGA 1 cut(s) 1219
PciI ACATGT 1 cut(s) 676
PctI GAATGC 2 cut(s) 249, 435
PfeI GAWTC 5 cut(s) 689, 708, 883, 1032, 1118
PflFI GACNNNGTC 1 cut(s) 16
PkrI GCNGC 7 cut(s) 63, 384, 409, 412, 610, 631, 1078
PleI GAGTC 1 cut(s) 898
PpsI GAGTC 1 cut(s) 898
PpuMI RGGWCCY 1 cut(s) 740
PscI ACATGT 1 cut(s) 676
PshBI ATTAAT 1 cut(s) 273
Psp124BI GAGCTC 1 cut(s) 240
Psp5II RGGWCCY 1 cut(s) 740
Psp6I CCWGG 2 cut(s) 79, 736
PspGI CCWGG 2 cut(s) 79, 736
PspN4I GGNNCC 3 cut(s) 49, 586, 742
PspPI GGNCC 1 cut(s) 740
PspPPI RGGWCCY 1 cut(s) 740
PspXI VCTCGAGB 1 cut(s) 612
PstI CTGCAG 1 cut(s) 387
PsuI RGATCY 1 cut(s) 1243
PsyI GACNNNGTC 1 cut(s) 16
PvuII CAGCTG 1 cut(s) 382
RsaI GTAC 7 cut(s) 308, 778, 790, 820, 835, 976, 982
RsaNI GTAC 7 cut(s) 307, 777, 789, 819, 834, 975, 981
SacI GAGCTC 1 cut(s) 240
SaqAI TTAA 2 cut(s) 273, 1094
SatI GCNGC 7 cut(s) 62, 383, 408, 411, 609, 630, 1077
Sau3AI GATC 4 cut(s) 37, 546, 964, 1243
Sau96I GGNCC 1 cut(s) 740
ScaI AGTACT 6 cut(s) 778, 790, 820, 835, 976, 982
SchI GAGTC 1 cut(s) 899
ScrFI CCNGG 2 cut(s) 81, 738
SduI GDGCHC 2 cut(s) 153, 240
SfaNI GCATC 2 cut(s) 217, 1213
SfcI CTRYAG 1 cut(s) 383
Sfr274I CTCGAG 1 cut(s) 612
SfuI TTCGAA 1 cut(s) 1140
SinI GGWCC 1 cut(s) 740
SlaI CTCGAG 1 cut(s) 612
SmlI CTYRAG 3 cut(s) 343, 612, 937
SmoI CTYRAG 3 cut(s) 343, 612, 937
SpeI ACTAGT 4 cut(s) 770, 821, 842, 977
Sse9I AATT 5 cut(s) 198, 291, 997, 1091, 1136
SsiI CCGC 3 cut(s) 147, 407, 410
SspI AATATT 1 cut(s) 1015
SspMI CTAG 7 cut(s) 771, 786, 822, 837, 843, 852, 978
SstI GAGCTC 1 cut(s) 240
StyD4I CCNGG 2 cut(s) 79, 736
TaaI ACNGT 1 cut(s) 1216
TaiI ACGT 1 cut(s) 1114
TasI AATT 5 cut(s) 198, 291, 997, 1091, 1136
TatI WGTACW 7 cut(s) 306, 776, 788, 818, 833, 974, 980
TauI GCSGC 2 cut(s) 410, 413
TfiI GAWTC 5 cut(s) 689, 708, 883, 1032, 1118
Tru1I TTAA 2 cut(s) 273, 1094
Tru9I TTAA 2 cut(s) 273, 1094
TseI GCWGC 5 cut(s) 61, 382, 608, 629, 1076
Tth111I GACNNNGTC 1 cut(s) 16
VpaK11BI GGWCC 1 cut(s) 740
VspI ATTAAT 1 cut(s) 273
XagI CCTNNNNNAGG 1 cut(s) 78
XapI RAATTY 2 cut(s) 997, 1136
XceI RCATGY 1 cut(s) 680
XhoI CTCGAG 1 cut(s) 612
XmiI GTMKAC 1 cut(s) 924
XspI CTAG 7 cut(s) 771, 786, 822, 837, 843, 852, 978
ZrmI AGTACT 6 cut(s) 778, 790, 820, 835, 976, 982
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.