Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0005037

Physical Location & Seq

Genomic Coordinates Reverse (-)

1663211 .. 1672656

Gene Structure 9446 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00001220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3576 bp

ATGTTCCAATGCGTCTCCTCCGATTCGCCCAAGCTTCAAGAATCGGCGTTCTTGATATTCGCGCAGCTTTCTCAGTACATCGGCGACTCCTTGGTTCCGTTCATCAAGGAATTGCACGCCGTCTTCTTGCACTGCCTGAGCTCCTCCACCAACTCTGACGTTAAGATCGCTGCCTTGAATGCCGTGATTAATTTCATTCAGTGTTTGACCAGCTCCGGAGATAGGGATAGGTTTCAGGACCTATTGCCGGCGATGATGAGGACATTGATGGAGTCTTTGAACAACGGGAACGAGGCCACGGCGCAGGAGGCACTCGAGTTGTTCATCGAATTGGCTGGGACTGAGCCCAGGTTCCTCAGGAGGCAGATTGTGGAGGTGGTTGGGTCTATGCTGCAGGTTGCTGAAGCTGAGTCCTTGGAAGAAGGGACCAGGCACTTGGCCATAGAGTTTGTGATCACTCTAGCCGAGGCCAGGGAGCGAGCCCCGGGGATGATGAGGAAGTTGCCGCAGTTTATTAGTAGGTTGTTTGCCATTTTGATGAAGATGGTTTTGGATATCGAGGATGATCCCTCATGGCATACCGCCGAGACTGAAGATGAGGATGCTGGTGAGAGTGGTAATTACAGTGTTGGGCAGGAGTGTTTGGATAGGCTTGCCATTTCCTTGGGTGGGAATACCATTGTTCCCGTCGCGTCCGAGCAGTTGCCTGCTTATTTGGCTGCCCCCGAGTGGCAGAAACACCATGCAGCATTGATTGCCCTTGCACAGATTGCTGAGGGTTGTTCTAAGGTAATGATAAAAAATTTGGAGCAAGTGGTGGCAATGGTCTTGAACTCGTTTCAAGATCCTCATCCTCGTGTAAGGTGGGCAGCTATTAATGCAATTGGGCAGTTGTCTACTGATTTGGGCCCAGACCTGCAAGTTCAATATCATCAACGGGTGCTTCCGGCATTAGCTGCTGCCATGGATGATTTTCAGAACCCTCGTGTGCAGGCACATGCTGCTTCAGCAGTGCTCAACTTCAGTGAGAACTGTACACCAGATATTTTGACACCTTATTTGGATGGAATAGTGAGCAAATTGCTTGTACTTCTGCAGAATGGGAAACAAATGGTGCAAGAGGGGGCATTGACTGCTTTGGCATCAGTTGCTGATTCATCTCAGGAGCATTTCCAAAAATACTATGATGCCGTTATGCCTTACCTGAAAGCTATCTTGGTGAATGCAACTGATAAATCTAATCGCATGCTTCGGGCTAAATCCATGGAATGTATTAGCTTGGTTGGTATGGCTGTTGGAAAAGAGAAATTCAGGGATGATGCTAAGCAGGTCATGGAAGTGCTGATGTCATTGCAAGGGTCTCAAATGGAGGCAGATGACCCAACTACAAGTTACATGCTACAAGCATGGGCCAGACTCTGCAAGTGTTTAGGACAAGATTTCCTCCCATACATGAGCGTTGTAATGCCTCCTTTGCTTCAGTCTGCTCAACTTAAGCCAGATGTAACTATTACCTCCGCAGATGACAATAGTGATATCGATGAATCTGATGATGAAAGTATGGAAACAATTACTCTTGGAGATAAAAGGATTGGAATCAAGACTAGTGTATTGGAAGAAAAAGCTACAGCTTGCAATATGCTGTGTTGCTATGCAGATGAACTGAAAGAAGGTTTCTTTCCTTGGATTGATCAGGTTGCCCCAACTTTAGTTCCACTTCTTAAATTTTATTTCCATGAAGAAGTGAGGAAGGCAGCTGTTTCAGCAATGCCGGAGCTACTGCTTTCTGCAAAGTTAGCTATAGAGAAAGGGCTAGCTCAAGGTCGTAACGAAACCTATATAAAGCAATTGTCTGACTACATTGTTCCAGCTCTGGTGGAAGCATTGCATAAGGAACCTGATACAGAAATCTGCGCAAATATATTGGATGCGATAAATGAATGCATACAGATCTCTGGACCACTTTTAGATGAAAGCCAGGTCAGATCCATTGTTGAGGAGATAAAGCAGGTGATCACTGCCAGTTCAAGTAGGAAAAGAGAGAGAGCAGAAAGGACCCAAGCAGAAGATTTTGATGATGAGGAAAGGGAACTGATTAAAGAGGAAAATGAACAAGAGGAAGAAGTTTTTGATCAAGTCGGAGAAATTTTGGGAACTCTGATTAAAACATTCAAAGCCTCTTTCTTGCCTTTCTTTGATGAGCTATCAACATATCTAACACCTATGTGGGTAAGTAGCTTTTTTCGTTGCCTGAAGGAAGCAGCTTTTTCTGAGAGAGAAGGGATTGCAATATGCATCTTTGATGATGTTGCAGAGCAGTGTCGTGAAGCAGCTCTAAAATATTATGACACATTTCTTCCCTTTCTATTGGAGGCTTGTAATGATGAGAGCCCTGATGTTCGACAGGCAGCTGTATATGGACTTGGTGTCTGTGCAGAGTTTGGTGGATCTGTAATTAAACCTCTTATTCGCGTGGCTCTTTCGAGGCTAAATGTTGTGATTCAGCATCCCAATGCCCTGCAACCTGACAACATAATGGCATATGATAATGCGGTTTCTGCTCTAGGAAAGATTTGCCAATATCATCGTGATAGTATAGATGCACCTCAGGTCATCCCTGCATGGCTGAACTGTTTACCGATAAAAGGTGACGTGATTGAAGCCAAAGTTGTTCATGATCAGCTCTGCTCTATGGTTGAGAGCCTCTCTTCTCTTTCACCTTCTGGTATGGGAATTCAATCGCAGAAGCACGAAAAAGGGGTCTCGGCCGAGAAAGAAAGCAAGTTCAAGCAGAGGAGCAGCAGCAACAACAACACCAAAAGCAAGTTTGTTGGGGTGAGACAAAGGCCGTCAGGGAAATGGGTGGCAGAGATCAAGGACACAACAAAGAAGATTAGAATGTGGCTTGGAACATTTGAAACTGCCGAGGAAGCTGCTCGAGCTTATGATGAAGCTGCGTGCCTTCTTCGTGGTTCGAATACCAGAACCAACTTTACCAGTACTCATGTTCCTTCAAATTCTCCACTGTCTTTGAAAATCAAGAACCTCCTCAACCACAAAAAGAGCTTGAAACAACAAAGCCCTTCAACCCCCAACACCATAAAAACCACCCCTAAAGCTAGTACTAGAATTAGTAGTACTGTTACTGATAACAATATTCATAATTCTAGTTACTACAATACTAATTGCAGCTCTCTGCCTAGTTTCAAATCCCAGAACATTGAGGTCTCAGGTGATGCATATAGACCAGACCTCAGCAACTGCATTGGGGATCTTCAAGTACCGGCTATGTTCCACTTCGATCAACCATGGCAATTCTTAAGCGGGTTTGATCAGCTTCCGCATAACCATGAAGGGTTGTATTTAACAAAAGGCATTGCCACTGGAGTGTCACATAATGCAGCAGAGCCAAATCAGCTGACAGAATTCGAACACGCAGAGGTAGAAAGACAGATAACTTCTGCTTCATTTTATGCAGTGAACGAAGTCAACGAGTACTTGGAGAATGCATATGATGATGCAAGTGATGCTCTGTGGGATCTTCCTAGTCTGTCTCAGTTGTTCTGCCTTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000060 GO:0001101 GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006606 GO:0006607 GO:0006610 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032386 GO:0032388 GO:0032879 GO:0032880 GO:0033036 GO:0033157 GO:0033218 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0042221 GO:0042277 GO:0042306 GO:0042307 GO:0042886 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046822 GO:0046824 GO:0046907 GO:0048518 GO:0050789 GO:0050896 GO:0051049 GO:0051050 GO:0051169 GO:0051170 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0060341 GO:0065007 GO:0070013 GO:0070201 GO:0070727 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071702 GO:0071705 GO:0072594 GO:0090087 GO:0090316 GO:1900180 GO:1900182 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1903827 GO:1903829 GO:1904589 GO:1904591 GO:1904951

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HEAT HEAT_2 HEAT_EZ

Protein Analysis

1191

Amino Acids

132.16

Weight (kDa)

4.87

Isoelectric Point (pI)

46.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_IPO5	PF25780	1 - 127	3.1e-23	IPO5-like, TPR repeats
Importin_rep_4	PF18808	138 - 229	2.9e-22	Importin repeat
HEAT_2	PF13646	238 - 337	5e-07	HEAT repeats
HEAT_EZ	PF13513	244 - 298	3.5e-08	HEAT-like repeat
TOR1L1_N	PF24714	250 - 447	2.4e-08	TORTIFOLIA1 N-terminal
HEAT_EZ	PF13513	328 - 382	5.8e-07	HEAT-like repeat
TPR_IMB1	PF25574	331 - 501	1e-11	Importin subunit beta-1-like, TPR repeats
Importin_rep_6	PF18829	638 - 740	2.5e-19	Importin repeat 6
HEAT	PF02985	785 - 813	2.3e-06	HEAT repeat
AP2	PF00847	941 - 991	8.2e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0005037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19790
fragaria_vesca	FvH4_6g02490
malus_domestica	MD03G1004500.v1.1 MD11G1005200.v1.1 MD12G1004600.v1.1 MD14G1003100.v1.1
prunus_persica	Prupe.6G004400_v2.0.a1 Prupe.7G004900_v2.0.a1
pyrus_communis	pycom03g00470 pycom11g00430 pycom14g00100
rosa_chinensis	RchiOBHm_Chr3g0450351 RchiOBHm_Chr5g0083271
rosa_laevigata	RLG00000025736 RLG00000037025
rosa_multiflora	Rmu_sc0000330.1_g000004 Rmu_sc0011792.1_g000007
rosa_roxburghii	Rroxscaffold_1G00001220 Rroxscaffold_6G00428080
rosa_rugosa	Rorug02G0627100.1 Rorug05G0483900
rosa_samantha	Rh3AG027500 Rh3BG028200 Rh3CG026900 Rh3DG028100 Rh5BG560600 Rh5CG583300 Rh5DG569900
rosa_wichuraiana	Rw3G002140 Rw5G049960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1999
Acc16I	TGCGCA	1 cut(s)	1915
Acc36I	ACCTGC	4 cut(s)	385, 924, 1318, 1999
AccI	GTMKAC	1 cut(s)	896
AccII	CGCG	3 cut(s)	62, 692, 2472
AccIII	TCCGGA	1 cut(s)	215
AciI	CCGC	6 cut(s)	506, 582, 1518, 2552, 3324, 3341
AclWI	GGATC	6 cut(s)	560, 839, 1980, 2455, 3279, 3546
AcoI	YGGCCR	2 cut(s)	438, 2766
AcsI	RAATTY	7 cut(s)	802, 1307, 1724, 2145, 2733, 3016, 3425
AcuI	CTGAAG	6 cut(s)	423, 612, 990, 1006, 1463, 2273
AfaI	GTAC	8 cut(s)	77, 1036, 1089, 3001, 3124, 3139, 3282, 3497
AfiI	CCNNNNNNNGG	6 cut(s)	222, 247, 471, 669, 729, 2645
AflII	CTTAAG	2 cut(s)	1493, 3319
AhdI	GACNNNNNGTC	1 cut(s)	2426
AhlI	ACTAGT	1 cut(s)	1604
AjiI	CACGTC	1 cut(s)	2653
AjnI	CCWGG	4 cut(s)	347, 428, 470, 1977
AjuI	GAANNNNNNNTTGG	4 cut(s)	533, 565, 1199, 1231
AleI	CACNNNNGTG	2 cut(s)	2224, 3386
Alw21I	GWGCWC	2 cut(s)	143, 1017
Alw26I	GTCTC	7 cut(s)	19, 581, 1365, 2767, 2833, 3232, 3558
AlwI	GGATC	6 cut(s)	560, 839, 1980, 2455, 3279, 3546
AlwNI	CAGNNNCTG	3 cut(s)	1151, 1419, 3261
Ama87I	CYCGRG	4 cut(s)	314, 484, 725, 2937
Aor13HI	TCCGGA	1 cut(s)	215
AoxI	GGCC	7 cut(s)	294, 438, 468, 907, 1410, 2766, 2846
ApaI	GGGCCC	1 cut(s)	911
ApoI	RAATTY	7 cut(s)	802, 1307, 1724, 2145, 2733, 3016, 3425
ArsI	GACNNNNNNTTYG	4 cut(s)	1042, 1074, 2745, 2777
AseI	ATTAAT	2 cut(s)	189, 876
AspLEI	GCGC	3 cut(s)	64, 304, 1916
AspS9I	GGNCC	7 cut(s)	238, 426, 907, 908, 1410, 1958, 2055
AsuC2I	CCSGG	2 cut(s)	485, 486
AsuHPI	GGTGA	7 cut(s)	620, 1231, 2023, 2660, 2709, 2848, 3245
AsuII	TTCGAA	2 cut(s)	2975, 3429
AsuNHI	GCTAGC	1 cut(s)	1813
AvaI	CYCGRG	4 cut(s)	314, 484, 725, 2937
AvaII	GGWCC	4 cut(s)	238, 426, 1958, 2055
AxyI	CCTNAGG	2 cut(s)	356, 2607
BaeGI	GKGCMC	1 cut(s)	911
BalI	TGGCCA	1 cut(s)	440
BanII	GRGCYC	5 cut(s)	143, 348, 484, 911, 2393
BauI	CACGAG	2 cut(s)	855, 984
BbsI	GAAGAC	1 cut(s)	115
Bbv12I	GWGCWC	2 cut(s)	143, 1017
BbvCI	CCTCAGC	2 cut(s)	774, 3254
BccI	CCATC	3 cut(s)	262, 538, 1058
BceAI	ACGGC	5 cut(s)	104, 167, 315, 1175, 2833
BcgI	CGANNNNNNTGC	2 cut(s)	2915, 2949
BciT130I	CCWGG	4 cut(s)	349, 430, 472, 1979
BclI	TGATCA	6 cut(s)	453, 1690, 2013, 2131, 2677, 3331
BcnI	CCSGG	2 cut(s)	485, 486
BcoDI	GTCTC	7 cut(s)	19, 581, 1365, 2767, 2833, 3232, 3558
BcuI	ACTAGT	1 cut(s)	1604
BfaI	CTAG	9 cut(s)	461, 1605, 1814, 2564, 3120, 3126, 3168, 3201, 3546
BfmI	CTRYAG	4 cut(s)	392, 1094, 1626, 1800
BfrI	CTTAAG	2 cut(s)	1493, 3319
BfuAI	ACCTGC	4 cut(s)	385, 924, 1318, 1999
BglII	AGATCT	1 cut(s)	1950
BlpI	GCTNAGC	1 cut(s)	1323
BmcAI	AGTACT	4 cut(s)	3001, 3124, 3139, 3497
Bme1390I	CCNGG	6 cut(s)	349, 430, 472, 485, 486, 1979
Bme18I	GGWCC	4 cut(s)	238, 426, 1958, 2055
BmeRI	GACNNNNNGTC	1 cut(s)	2426
BmeT110I	CYCGRG	4 cut(s)	314, 484, 725, 2937
BmgBI	CACGTC	1 cut(s)	2653
BmgT120I	GGNCC	7 cut(s)	238, 426, 907, 908, 1410, 1958, 2055
BmiI	GGNNCC	6 cut(s)	96, 353, 427, 909, 1896, 2057
BmrFI	CCNGG	6 cut(s)	349, 430, 472, 485, 486, 1979
BmtI	GCTAGC	1 cut(s)	1817
BpiI	GAAGAC	1 cut(s)	115
BplI	GAGNNNNNCTC	2 cut(s)	2690, 2722
BpmI	CTGGAG	1 cut(s)	3405
Bpu10I	CCTNAGC	3 cut(s)	137, 774, 3254
Bpu1102I	GCTNAGC	1 cut(s)	1323
Bpu14I	TTCGAA	2 cut(s)	2975, 3429
BpuEI	CTTGAG	1 cut(s)	1803
BpuMI	CCSGG	2 cut(s)	485, 486
Bsa29I	ATCGAT	1 cut(s)	1539
BsaBI	GATNNNNATC	2 cut(s)	849, 1595
BsaI	GGTCTC	3 cut(s)	1365, 2767, 3232
BsaWI	WCCGGW	1 cut(s)	215
Bsc4I	CCNNNNNNNGG	6 cut(s)	222, 247, 471, 669, 729, 2645
Bse118I	RCCGGY	2 cut(s)	247, 3283
Bse1I	ACTGG	3 cut(s)	2022, 2997, 3388
Bse21I	CCTNAGG	2 cut(s)	356, 2607
Bse3DI	GCAATG	5 cut(s)	828, 1349, 1773, 1883, 3375
Bse8I	GATNNNNATC	2 cut(s)	849, 1595
BseAI	TCCGGA	1 cut(s)	215
BseBI	CCWGG	4 cut(s)	349, 430, 472, 1979
BseCI	ATCGAT	1 cut(s)	1539
BseJI	GATNNNNATC	2 cut(s)	849, 1595
BseLI	CCNNNNNNNGG	6 cut(s)	222, 247, 471, 669, 729, 2645
BseMI	GCAATG	5 cut(s)	828, 1349, 1773, 1883, 3375
BseNI	ACTGG	3 cut(s)	2022, 2997, 3388
BseRI	GAGGAG	5 cut(s)	7, 133, 2012, 2809, 3038
BseSI	GKGCMC	1 cut(s)	911
BseX3I	CGGCCG	1 cut(s)	2766
BseYI	CCCAGC	1 cut(s)	335
BsgI	GTGCAG	2 cut(s)	1010, 2454
Bsh1236I	CGCG	3 cut(s)	62, 692, 2472
Bsh1285I	CGRYCG	1 cut(s)	2769
BshFI	GGCC	7 cut(s)	296, 440, 470, 909, 1412, 2768, 2848
BshVI	ATCGAT	1 cut(s)	1539
BsiEI	CGRYCG	1 cut(s)	2769
BsiHKAI	GWGCWC	2 cut(s)	143, 1017
BsiHKCI	CYCGRG	4 cut(s)	314, 484, 725, 2937
BsiSI	CCGG	6 cut(s)	216, 248, 485, 947, 1772, 3284
BslFI	GGGAC	2 cut(s)	352, 439
BslI	CCNNNNNNNGG	6 cut(s)	222, 247, 471, 669, 729, 2645
BsmAI	GTCTC	7 cut(s)	19, 581, 1365, 2767, 2833, 3232, 3558
BsmBI	CGTCTC	1 cut(s)	19
BsmFI	GGGAC	2 cut(s)	352, 439
BsmI	GAATGC	4 cut(s)	184, 1228, 1946, 3511
BsnI	GGCC	7 cut(s)	296, 440, 470, 909, 1412, 2768, 2848
Bso31I	GGTCTC	3 cut(s)	1365, 2767, 3232
BsoBI	CYCGRG	4 cut(s)	314, 484, 725, 2937
Bsp119I	TTCGAA	2 cut(s)	2975, 3429
Bsp120I	GGGCCC	1 cut(s)	907
Bsp1286I	GDGCHC	6 cut(s)	143, 348, 484, 911, 1017, 2393
Bsp13I	TCCGGA	1 cut(s)	215
Bsp1407I	TGTACA	1 cut(s)	1034
Bsp1720I	GCTNAGC	1 cut(s)	1323
Bsp19I	CCATGG	3 cut(s)	963, 1263, 3308
BspACI	CCGC	6 cut(s)	506, 582, 1518, 2552, 3324, 3341
BspANI	GGCC	7 cut(s)	296, 440, 470, 909, 1412, 2768, 2848
BspDI	ATCGAT	1 cut(s)	1539
BspEI	TCCGGA	1 cut(s)	215
BspFNI	CGCG	3 cut(s)	62, 692, 2472
BspHI	TCATGA	1 cut(s)	2674
BspLI	GGNNCC	6 cut(s)	96, 353, 427, 909, 1896, 2057
BspMAI	CTGCAG	2 cut(s)	396, 1098
BspMI	ACCTGC	4 cut(s)	385, 924, 1318, 1999
BspOI	GCTAGC	1 cut(s)	1817
BspPI	GGATC	6 cut(s)	560, 839, 1980, 2455, 3279, 3546
BspT104I	TTCGAA	2 cut(s)	2975, 3429
BspTI	CTTAAG	2 cut(s)	1493, 3319
BspTNI	GGTCTC	3 cut(s)	1365, 2767, 3232
BsrDI	GCAATG	5 cut(s)	828, 1349, 1773, 1883, 3375
BsrFI	RCCGGY	2 cut(s)	247, 3283
BsrGI	TGTACA	1 cut(s)	1034
BsrI	ACTGG	3 cut(s)	2022, 2997, 3388
BssAI	RCCGGY	2 cut(s)	247, 3283
BssSI	CACGAG	2 cut(s)	855, 984
BssT1I	CCWWGG	8 cut(s)	90, 414, 663, 963, 1263, 1682, 3308, 3568
Bst2BI	CACGAG	2 cut(s)	855, 984
Bst2UI	CCWGG	4 cut(s)	349, 430, 472, 1979
Bst4CI	ACNGT	5 cut(s)	626, 1034, 2633, 3027, 3142
Bst6I	CTCTTC	1 cut(s)	2713
BstAFI	CTTAAG	2 cut(s)	1493, 3319
BstAPI	GCANNNNNTGC	7 cut(s)	755, 770, 956, 1001, 1133, 1148, 3527
BstAUI	TGTACA	1 cut(s)	1034
BstBI	TTCGAA	2 cut(s)	2975, 3429
BstDSI	CCRYGG	4 cut(s)	297, 963, 1263, 3308
BstFNI	CGCG	3 cut(s)	62, 692, 2472
BstHHI	GCGC	3 cut(s)	64, 304, 1916
BstMAI	GTCTC	7 cut(s)	19, 581, 1365, 2767, 2833, 3232, 3558
BstMCI	CGRYCG	1 cut(s)	2769
BstNI	CCWGG	4 cut(s)	349, 430, 472, 1979
BstNSI	RCATGY	3 cut(s)	1001, 1249, 1399
BstSCI	CCNGG	6 cut(s)	347, 428, 470, 483, 484, 1977
BstSFI	CTRYAG	4 cut(s)	392, 1094, 1626, 1800
BstSLI	GKGCMC	1 cut(s)	911
BstUI	CGCG	3 cut(s)	62, 692, 2472
BstV2I	GAAGAC	1 cut(s)	115
BstX2I	RGATCY	6 cut(s)	844, 1950, 1985, 2447, 3271, 3538
BstXI	CCANNNNNNTGG	2 cut(s)	436, 664
BstYI	RGATCY	6 cut(s)	844, 1950, 1985, 2447, 3271, 3538
BstZI	CGGCCG	1 cut(s)	2766
Bsu15I	ATCGAT	1 cut(s)	1539
Bsu36I	CCTNAGG	2 cut(s)	356, 2607
BsuRI	GGCC	7 cut(s)	296, 440, 470, 909, 1412, 2768, 2848
BsuTUI	ATCGAT	1 cut(s)	1539
BtgI	CCRYGG	4 cut(s)	297, 963, 1263, 3308
BtgZI	GCGATG	1 cut(s)	266
BtrI	CACGTC	1 cut(s)	2653
BtsI	GCAGTG	5 cut(s)	130, 1017, 2016, 2324, 3483
BveI	ACCTGC	4 cut(s)	385, 924, 1318, 1999
CaiI	CAGNNNCTG	3 cut(s)	1151, 1419, 3261
CciI	TCATGA	1 cut(s)	2674
CfoI	GCGC	3 cut(s)	64, 304, 1916
Cfr10I	RCCGGY	2 cut(s)	247, 3283
Cfr13I	GGNCC	7 cut(s)	238, 426, 907, 908, 1410, 1958, 2055
Cfr9I	CCCGGG	1 cut(s)	484
ClaI	ATCGAT	1 cut(s)	1539
CseI	GACGC	1 cut(s)	681
Csp6I	GTAC	8 cut(s)	76, 1035, 1088, 3000, 3123, 3138, 3281, 3496
CspCI	CAANNNNNGTGG	2 cut(s)	3012, 3047
CviQI	GTAC	8 cut(s)	76, 1035, 1088, 3000, 3123, 3138, 3281, 3496
DriI	GACNNNNNGTC	1 cut(s)	2426
EaeI	YGGCCR	2 cut(s)	438, 2766
EagI	CGGCCG	1 cut(s)	2766
Eam1104I	CTCTTC	1 cut(s)	2713
Eam1105I	GACNNNNNGTC	1 cut(s)	2426
EarI	CTCTTC	1 cut(s)	2713
Ecl136II	GAGCTC	1 cut(s)	141
EclXI	CGGCCG	1 cut(s)	2766
Eco130I	CCWWGG	8 cut(s)	90, 414, 663, 963, 1263, 1682, 3308, 3568
Eco24I	GRGCYC	5 cut(s)	143, 348, 484, 911, 2393
Eco31I	GGTCTC	3 cut(s)	1365, 2767, 3232
Eco32I	GATATC	2 cut(s)	556, 1537
Eco47I	GGWCC	4 cut(s)	238, 426, 1958, 2055
Eco52I	CGGCCG	1 cut(s)	2766
Eco53kI	GAGCTC	1 cut(s)	141
Eco57I	CTGAAG	6 cut(s)	423, 612, 990, 1006, 1463, 2273
Eco81I	CCTNAGG	2 cut(s)	356, 2607
Eco88I	CYCGRG	4 cut(s)	314, 484, 725, 2937
EcoICRI	GAGCTC	1 cut(s)	141
EcoO109I	RGGNCCY	2 cut(s)	238, 2055
EcoRI	GAATTC	2 cut(s)	2733, 3425
EcoRII	CCWGG	4 cut(s)	347, 428, 470, 1977
EcoRV	GATATC	2 cut(s)	556, 1537
EcoT14I	CCWWGG	8 cut(s)	90, 414, 663, 963, 1263, 1682, 3308, 3568
EcoT22I	ATGCAT	4 cut(s)	1946, 2297, 3241, 3511
EcoT38I	GRGCYC	5 cut(s)	143, 348, 484, 911, 2393
ErhI	CCWWGG	8 cut(s)	90, 414, 663, 963, 1263, 1682, 3308, 3568
Esp3I	CGTCTC	1 cut(s)	19
FaqI	GGGAC	2 cut(s)	352, 439
FauI	CCCGC	1 cut(s)	3317
FauNDI	CATATG	2 cut(s)	2542, 3511
FbaI	TGATCA	6 cut(s)	453, 1690, 2013, 2131, 2677, 3331
FblI	GTMKAC	1 cut(s)	896
FriOI	GRGCYC	5 cut(s)	143, 348, 484, 911, 2393
FspBI	CTAG	9 cut(s)	461, 1605, 1814, 2564, 3120, 3126, 3168, 3201, 3546
FspI	TGCGCA	1 cut(s)	1915
GlaI	GCGC	3 cut(s)	63, 303, 1915
GsaI	CCCAGC	1 cut(s)	339
GsuI	CTGGAG	1 cut(s)	3405
HaeIII	GGCC	7 cut(s)	296, 440, 470, 909, 1412, 2768, 2848
HapII	CCGG	6 cut(s)	216, 248, 485, 947, 1772, 3284
HgaI	GACGC	1 cut(s)	681
HhaI	GCGC	3 cut(s)	64, 304, 1916
Hin6I	GCGC	3 cut(s)	62, 302, 1914
HinP1I	GCGC	3 cut(s)	62, 302, 1914
HincII	GTYRAC	1 cut(s)	3490
HindII	GTYRAC	1 cut(s)	3490
HindIII	AAGCTT	1 cut(s)	32
HpaII	CCGG	6 cut(s)	216, 248, 485, 947, 1772, 3284
HphI	GGTGA	7 cut(s)	620, 1231, 2023, 2660, 2709, 2848, 3245
Hpy166II	GTNNAC	5 cut(s)	897, 1037, 2636, 3481, 3490
Hpy8I	GTNNAC	5 cut(s)	897, 1037, 2636, 3481, 3490
Hpy99I	CGWCG	1 cut(s)	692
HpyCH4III	ACNGT	5 cut(s)	626, 1034, 2633, 3027, 3142
HpyCH4IV	ACGT	2 cut(s)	159, 2652
HpySE526I	ACGT	2 cut(s)	159, 2652
HspAI	GCGC	3 cut(s)	62, 302, 1914
Kpn2I	TCCGGA	1 cut(s)	215
KroI	GCCGGC	1 cut(s)	247
KroNI	GCCGGC	1 cut(s)	249
Ksp22I	TGATCA	6 cut(s)	453, 1690, 2013, 2131, 2677, 3331
LmnI	GCTCC	7 cut(s)	146, 218, 475, 808, 1165, 1774, 2796
MaeI	CTAG	9 cut(s)	461, 1605, 1814, 2564, 3120, 3126, 3168, 3201, 3546
MaeII	ACGT	2 cut(s)	159, 2652
MaeIII	GTNAC	7 cut(s)	1391, 1504, 1826, 2648, 3142, 3170, 3390
MfeI	CAATTG	2 cut(s)	882, 1847
MflI	RGATCY	6 cut(s)	844, 1950, 1985, 2447, 3271, 3538
MhlI	GDGCHC	6 cut(s)	143, 348, 484, 911, 1017, 2393
MlsI	TGGCCA	1 cut(s)	440
MluNI	TGGCCA	1 cut(s)	440
MlyI	GAGTC	4 cut(s)	80, 281, 419, 1410
MmeI	TCCRAC	2 cut(s)	1276, 2119
Mox20I	TGGCCA	1 cut(s)	440
Mph1103I	ATGCAT	4 cut(s)	1946, 2297, 3241, 3511
MroI	TCCGGA	1 cut(s)	215
MroNI	GCCGGC	1 cut(s)	247
MscI	TGGCCA	1 cut(s)	440
MslI	CAYNNNNRTG	7 cut(s)	536, 855, 1337, 2224, 2511, 3348, 3386
Msp20I	TGGCCA	1 cut(s)	440
MspA1I	CMGCKG	3 cut(s)	1757, 2411, 3418
MspCI	CTTAAG	2 cut(s)	1493, 3319
MspI	CCGG	6 cut(s)	216, 248, 485, 947, 1772, 3284
MspR9I	CCNGG	6 cut(s)	349, 430, 472, 485, 486, 1979
MunI	CAATTG	2 cut(s)	882, 1847
Mva1269I	GAATGC	4 cut(s)	184, 1228, 1946, 3511
MvaI	CCWGG	4 cut(s)	349, 430, 472, 1979
MvnI	CGCG	3 cut(s)	62, 692, 2472
NaeI	GCCGGC	1 cut(s)	249
NciI	CCSGG	2 cut(s)	485, 486
NcoI	CCATGG	3 cut(s)	963, 1263, 3308
NdeI	CATATG	2 cut(s)	2542, 3511
NgoMIV	GCCGGC	1 cut(s)	247
NheI	GCTAGC	1 cut(s)	1813
NlaIV	GGNNCC	6 cut(s)	96, 353, 427, 909, 1896, 2057
NmeAIII	GCCGAG	5 cut(s)	490, 610, 2744, 2794, 2950
NmuCI	GTSAC	2 cut(s)	2648, 3390
NsbI	TGCGCA	1 cut(s)	1915
NsiI	ATGCAT	4 cut(s)	1946, 2297, 3241, 3511
NspI	RCATGY	3 cut(s)	1001, 1249, 1399
NspV	TTCGAA	2 cut(s)	2975, 3429
OliI	CACNNNNGTG	2 cut(s)	2224, 3386
PaeI	GCATGC	1 cut(s)	1249
PaeR7I	CTCGAG	2 cut(s)	314, 2937
PagI	TCATGA	1 cut(s)	2674
PaqCI	CACCTGC	1 cut(s)	1999
PcsI	WCGNNNNNNNCGW	1 cut(s)	3489
PctI	GAATGC	4 cut(s)	184, 1228, 1946, 3511
PdiI	GCCGGC	1 cut(s)	249
PfeI	GAWTC	6 cut(s)	23, 41, 1154, 1544, 1596, 2500
PleI	GAGTC	4 cut(s)	80, 280, 418, 1410
PpsI	GAGTC	4 cut(s)	80, 280, 418, 1410
PpuMI	RGGWCCY	2 cut(s)	238, 2055
PshBI	ATTAAT	2 cut(s)	189, 876
Psp124BI	GAGCTC	1 cut(s)	143
Psp5II	RGGWCCY	2 cut(s)	238, 2055
Psp6I	CCWGG	4 cut(s)	347, 428, 470, 1977
PspFI	CCCAGC	1 cut(s)	335
PspGI	CCWGG	4 cut(s)	347, 428, 470, 1977
PspN4I	GGNNCC	6 cut(s)	96, 353, 427, 909, 1896, 2057
PspOMI	GGGCCC	1 cut(s)	907
PspPI	GGNCC	7 cut(s)	238, 426, 907, 908, 1410, 1958, 2055
PspPPI	RGGWCCY	2 cut(s)	238, 2055
PspXI	VCTCGAGB	2 cut(s)	314, 2937
PsrI	GAACNNNNNNTAC	2 cut(s)	2977, 3009
PstI	CTGCAG	2 cut(s)	396, 1098
PstNI	CAGNNNCTG	3 cut(s)	1151, 1419, 3261
PsuI	RGATCY	6 cut(s)	844, 1950, 1985, 2447, 3271, 3538
PvuII	CAGCTG	3 cut(s)	1757, 2411, 3418
RsaI	GTAC	8 cut(s)	77, 1036, 1089, 3001, 3124, 3139, 3282, 3497
RsaNI	GTAC	8 cut(s)	76, 1035, 1088, 3000, 3123, 3138, 3281, 3496
RseI	CAYNNNNRTG	7 cut(s)	536, 855, 1337, 2224, 2511, 3348, 3386
SacI	GAGCTC	1 cut(s)	143
Sau96I	GGNCC	7 cut(s)	238, 426, 907, 908, 1410, 1958, 2055
ScaI	AGTACT	4 cut(s)	3001, 3124, 3139, 3497
SchI	GAGTC	4 cut(s)	80, 281, 419, 1410
ScrFI	CCNGG	6 cut(s)	349, 430, 472, 485, 486, 1979
SduI	GDGCHC	6 cut(s)	143, 348, 484, 911, 1017, 2393
SfcI	CTRYAG	4 cut(s)	392, 1094, 1626, 1800
Sfr274I	CTCGAG	2 cut(s)	314, 2937
SfuI	TTCGAA	2 cut(s)	2975, 3429
SinI	GGWCC	4 cut(s)	238, 426, 1958, 2055
SlaI	CTCGAG	2 cut(s)	314, 2937
SmaI	CCCGGG	1 cut(s)	486
SmiMI	CAYNNNNRTG	7 cut(s)	536, 855, 1337, 2224, 2511, 3348, 3386
SmlI	CTYRAG	5 cut(s)	314, 1493, 1818, 2937, 3319
SmoI	CTYRAG	5 cut(s)	314, 1493, 1818, 2937, 3319
SpeI	ACTAGT	1 cut(s)	1604
SphI	GCATGC	1 cut(s)	1249
SsiI	CCGC	6 cut(s)	506, 582, 1518, 2552, 3324, 3341
SspI	AATATT	2 cut(s)	2342, 3157
SspMI	CTAG	9 cut(s)	461, 1605, 1814, 2564, 3120, 3126, 3168, 3201, 3546
SstI	GAGCTC	1 cut(s)	143
StyD4I	CCNGG	6 cut(s)	347, 428, 470, 483, 484, 1977
StyI	CCWWGG	8 cut(s)	90, 414, 663, 963, 1263, 1682, 3308, 3568
TaaI	ACNGT	5 cut(s)	626, 1034, 2633, 3027, 3142
TaiI	ACGT	2 cut(s)	162, 2655
TatI	WGTACW	7 cut(s)	75, 1034, 1087, 2999, 3122, 3137, 3495
TauI	GCSGC	1 cut(s)	508
TfiI	GAWTC	6 cut(s)	23, 41, 1154, 1544, 1596, 2500
TseFI	GTSAC	2 cut(s)	2648, 3390
Tsp45I	GTSAC	2 cut(s)	2648, 3390
TspGWI	ACGGA	1 cut(s)	87
TspMI	CCCGGG	1 cut(s)	484
Vha464I	CTTAAG	2 cut(s)	1493, 3319
VpaK11BI	GGWCC	4 cut(s)	238, 426, 1958, 2055
VspI	ATTAAT	2 cut(s)	189, 876
XapI	RAATTY	7 cut(s)	802, 1307, 1724, 2145, 2733, 3016, 3425
XceI	RCATGY	3 cut(s)	1001, 1249, 1399
XhoI	CTCGAG	2 cut(s)	314, 2937
XmaI	CCCGGG	1 cut(s)	484
XmiI	GTMKAC	1 cut(s)	896
XspI	CTAG	9 cut(s)	461, 1605, 1814, 2564, 3120, 3126, 3168, 3201, 3546
ZrmI	AGTACT	4 cut(s)	3001, 3124, 3139, 3497
Zsp2I	ATGCAT	4 cut(s)	1946, 2297, 3241, 3511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.