Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0005037

Physical Location & Seq

Genomic Coordinates Forward (+)

87635058 .. 87636402

Gene Structure 1345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000037025

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGGACTTCAATCGCAGAAGCACGAGAAGAGGGTCTTGGCCGAGAAAGAAAGCAAGTTCAAGCAGAGGAGCAGCAGCAACAACAACACCAAAAGCAAGTTTGTTGGGGTGAGACAAAGGCCGTCAGGGAAATGGGTGGCAGAGATCAAGGACACAACAAAGAAGATCAGAATGTGGCTTGGAACATTCGAAACTGCCGAGGAAGCAGCTCGAGCTTATGATGAAGCTGCGTGCCTCCTTCGTGGTTCGAATACCAGAACCAACTTTACCAGTACTCATGTTCCTTCAAATTCGCCACTGTCTTTGAAAATCAAGAACCTCCTCAACCACAAAAAGAGCTTGAAACAACAAAGCCCTTCAACCCCCAACACCATAAAAACCACCCCTAAAGCTAGTACTAGAATTAGTAGTACTATTACTGATAACAATATTCATAGTTCTAGTTACTACAATGCTAATTGCAGCTCTCTGCCTAGTTTCAAATCCCAGAGCATTGAGGTCCCAGGTGATGCATATAGACCAGACCTCAGCAACTGCATTGGGGATCTTCAAGTACCGGCTATGTTCCACTTCGATCAACCATGGCAATTCTTAAGCGGGTTTGATCAGCTTCCGCATAACCATGAAGGGCTGTATTTAACAAAAGGCATTGCCACTGGAGTGTCACATAGTGCAGCAGAGCCAAATCAGCTGACAGAATTCGAACACGCGGAGGTAGAGAGACAGATAACTTCTGCTTCATTTTATGCAATGAACGAAGTCAACGAGTACTTGGAGAATGCATATGATGATGCAAGTGATGCTCTGTGGGATCTTCCTAGTCTGTCTCAGTTGTTCTGCCTTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009791 GO:0009877 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0035864 GO:0035865 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048519 GO:0048523 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0080090 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

283

Amino Acids

31.51

Weight (kDa)

7.71

Isoelectric Point (pI)

51.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	32 - 82	1.2e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19790
fragaria_vesca	FvH4_6g02490
malus_domestica	MD03G1004500.v1.1 MD11G1005200.v1.1 MD12G1004600.v1.1 MD14G1003100.v1.1
prunus_persica	Prupe.6G004400_v2.0.a1 Prupe.7G004900_v2.0.a1
pyrus_communis	pycom03g00470 pycom11g00430 pycom14g00100
rosa_chinensis	RchiOBHm_Chr3g0450351 RchiOBHm_Chr5g0083271
rosa_laevigata	RLG00000025736 RLG00000037025
rosa_multiflora	Rmu_sc0000330.1_g000004 Rmu_sc0011792.1_g000007
rosa_roxburghii	Rroxscaffold_1G00001220 Rroxscaffold_6G00428080
rosa_rugosa	Rorug02G0627100.1 Rorug05G0483900
rosa_samantha	Rh3AG027500 Rh3BG028200 Rh3CG026900 Rh3DG028100 Rh5BG560600 Rh5CG583300 Rh5DG569900
rosa_wichuraiana	Rw3G002140 Rw5G049960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	710
AciI	CCGC	3 cut(s)	597, 614, 710
AclWI	GGATC	2 cut(s)	552, 819
AcoI	YGGCCR	1 cut(s)	39
AcsI	RAATTY	2 cut(s)	289, 698
AdeI	CACNNNGTG	1 cut(s)	671
AfaI	GTAC	5 cut(s)	274, 397, 412, 555, 770
AflII	CTTAAG	1 cut(s)	592
AgsI	TTSAA	8 cut(s)	11, 61, 288, 307, 343, 360, 481, 551
AjnI	CCWGG	1 cut(s)	502
AjuI	GAANNNNNNNTTGG	2 cut(s)	20, 52
AleI	CACNNNNGTG	1 cut(s)	659
AluBI	AGCT	8 cut(s)	209, 215, 227, 339, 392, 465, 610, 691
AluI	AGCT	8 cut(s)	209, 215, 227, 339, 392, 465, 610, 691
Alw26I	GTCTC	3 cut(s)	106, 715, 831
AlwI	GGATC	2 cut(s)	552, 819
AlwNI	CAGNNNCTG	1 cut(s)	534
Ama87I	CYCGRG	1 cut(s)	210
AoxI	GGCC	2 cut(s)	39, 119
ApeKI	GCWGC	6 cut(s)	72, 75, 206, 227, 462, 674
ApoI	RAATTY	2 cut(s)	289, 698
AspS9I	GGNCC	1 cut(s)	499
AsuHPI	GGTGA	2 cut(s)	121, 518
AsuII	TTCGAA	3 cut(s)	189, 248, 702
AvaI	CYCGRG	1 cut(s)	210
AvaII	GGWCC	1 cut(s)	499
BauI	CACGAG	1 cut(s)	23
BbvCI	CCTCAGC	1 cut(s)	527
BbvI	GCAGC	6 cut(s)	84, 87, 214, 218, 474, 686
BceAI	ACGGC	1 cut(s)	106
BciT130I	CCWGG	1 cut(s)	504
BclI	TGATCA	1 cut(s)	604
BcoDI	GTCTC	3 cut(s)	106, 715, 831
BfaI	CTAG	5 cut(s)	393, 399, 441, 474, 819
BfrI	CTTAAG	1 cut(s)	592
BisI	GCNGC	6 cut(s)	73, 76, 207, 228, 463, 675
BlsI	GCNGC	6 cut(s)	74, 77, 208, 229, 464, 676
BmcAI	AGTACT	4 cut(s)	274, 397, 412, 770
Bme1390I	CCNGG	1 cut(s)	504
Bme18I	GGWCC	1 cut(s)	499
BmeT110I	CYCGRG	1 cut(s)	210
BmgT120I	GGNCC	1 cut(s)	499
BmiI	GGNNCC	1 cut(s)	501
BmrFI	CCNGG	1 cut(s)	504
BmsI	GCATC	3 cut(s)	499, 781, 790
BpmI	CTGGAG	1 cut(s)	678
Bpu10I	CCTNAGC	1 cut(s)	527
Bpu14I	TTCGAA	3 cut(s)	189, 248, 702
BsaJI	CCNNGG	4 cut(s)	198, 502, 581, 841
Bse118I	RCCGGY	1 cut(s)	556
Bse1I	ACTGG	2 cut(s)	270, 661
Bse3DI	GCAATG	2 cut(s)	648, 756
BseBI	CCWGG	1 cut(s)	504
BseDI	CCNNGG	4 cut(s)	198, 502, 581, 841
BseMI	GCAATG	2 cut(s)	648, 756
BseMII	CTCAG	2 cut(s)	541, 842
BseNI	ACTGG	2 cut(s)	270, 661
BseRI	GAGGAG	2 cut(s)	82, 311
BseXI	GCAGC	6 cut(s)	84, 87, 214, 218, 474, 686
BsgI	GTGCAG	1 cut(s)	693
Bsh1236I	CGCG	1 cut(s)	710
BshFI	GGCC	2 cut(s)	41, 121
BsiHKCI	CYCGRG	1 cut(s)	210
BsiSI	CCGG	1 cut(s)	557
BslFI	GGGAC	2 cut(s)	18, 485
BsmAI	GTCTC	3 cut(s)	106, 715, 831
BsmFI	GGGAC	2 cut(s)	18, 485
BsmI	GAATGC	1 cut(s)	784
BsnI	GGCC	2 cut(s)	41, 121
BsoBI	CYCGRG	1 cut(s)	210
Bsp119I	TTCGAA	3 cut(s)	189, 248, 702
Bsp143I	GATC	6 cut(s)	144, 165, 544, 574, 604, 811
Bsp19I	CCATGG	1 cut(s)	581
BspACI	CCGC	3 cut(s)	597, 614, 710
BspANI	GGCC	2 cut(s)	41, 121
BspCNI	CTCAG	2 cut(s)	540, 841
BspFNI	CGCG	1 cut(s)	710
BspLI	GGNNCC	1 cut(s)	501
BspPI	GGATC	2 cut(s)	552, 819
BspT104I	TTCGAA	3 cut(s)	189, 248, 702
BspTI	CTTAAG	1 cut(s)	592
BsrDI	GCAATG	2 cut(s)	648, 756
BsrFI	RCCGGY	1 cut(s)	556
BsrI	ACTGG	2 cut(s)	270, 661
BssAI	RCCGGY	1 cut(s)	556
BssECI	CCNNGG	4 cut(s)	198, 502, 581, 841
BssMI	GATC	6 cut(s)	144, 165, 544, 574, 604, 811
BssSI	CACGAG	1 cut(s)	23
BssT1I	CCWWGG	2 cut(s)	581, 841
Bst2BI	CACGAG	1 cut(s)	23
Bst2UI	CCWGG	1 cut(s)	504
Bst4CI	ACNGT	1 cut(s)	300
Bst6I	CTCTTC	1 cut(s)	23
BstAFI	CTTAAG	1 cut(s)	592
BstAPI	GCANNNNNTGC	1 cut(s)	800
BstBI	TTCGAA	3 cut(s)	189, 248, 702
BstC8I	GCNNGC	1 cut(s)	232
BstDEI	CTNAG	2 cut(s)	527, 828
BstDSI	CCRYGG	1 cut(s)	581
BstFNI	CGCG	1 cut(s)	710
BstKTI	GATC	6 cut(s)	147, 168, 547, 577, 607, 814
BstMAI	GTCTC	3 cut(s)	106, 715, 831
BstMBI	GATC	6 cut(s)	144, 165, 544, 574, 604, 811
BstMWI	GCNNNNNNNGC	4 cut(s)	203, 212, 688, 800
BstNI	CCWGG	1 cut(s)	504
BstSCI	CCNGG	1 cut(s)	502
BstUI	CGCG	1 cut(s)	710
BstV1I	GCAGC	6 cut(s)	84, 87, 214, 218, 474, 686
BstX2I	RGATCY	2 cut(s)	544, 811
BstYI	RGATCY	2 cut(s)	544, 811
BsuRI	GGCC	2 cut(s)	41, 121
BtgI	CCRYGG	1 cut(s)	581
BtsIMutI	CAGTG	2 cut(s)	296, 654
Cac8I	GCNNGC	1 cut(s)	232
CaiI	CAGNNNCTG	1 cut(s)	534
Cfr10I	RCCGGY	1 cut(s)	556
Cfr13I	GGNCC	1 cut(s)	499
Csp6I	GTAC	5 cut(s)	273, 396, 411, 554, 769
CspCI	CAANNNNNGTGG	2 cut(s)	285, 320
CviAII	CATG	3 cut(s)	278, 582, 623
CviQI	GTAC	5 cut(s)	273, 396, 411, 554, 769
DdeI	CTNAG	2 cut(s)	527, 828
DpnI	GATC	6 cut(s)	146, 167, 546, 576, 606, 813
DpnII	GATC	6 cut(s)	144, 165, 544, 574, 604, 811
DraIII	CACNNNGTG	1 cut(s)	671
EaeI	YGGCCR	1 cut(s)	39
Eam1104I	CTCTTC	1 cut(s)	23
EarI	CTCTTC	1 cut(s)	23
Eco130I	CCWWGG	2 cut(s)	581, 841
Eco47I	GGWCC	1 cut(s)	499
Eco88I	CYCGRG	1 cut(s)	210
EcoO109I	RGGNCCY	1 cut(s)	499
EcoRI	GAATTC	1 cut(s)	698
EcoRII	CCWGG	1 cut(s)	502
EcoT14I	CCWWGG	2 cut(s)	581, 841
EcoT22I	ATGCAT	2 cut(s)	514, 784
ErhI	CCWWGG	2 cut(s)	581, 841
FaeI	CATG	3 cut(s)	281, 585, 626
FalI	AAGNNNNNCTT	2 cut(s)	20, 52
FaqI	GGGAC	2 cut(s)	18, 485
FatI	CATG	3 cut(s)	277, 581, 622
FauI	CCCGC	1 cut(s)	590
FauNDI	CATATG	1 cut(s)	784
FbaI	TGATCA	1 cut(s)	604
Fnu4HI	GCNGC	6 cut(s)	73, 76, 207, 228, 463, 675
Fsp4HI	GCNGC	6 cut(s)	73, 76, 207, 228, 463, 675
FspBI	CTAG	5 cut(s)	393, 399, 441, 474, 819
GluI	GCNGC	6 cut(s)	73, 76, 207, 228, 463, 675
GsuI	CTGGAG	1 cut(s)	678
HaeIII	GGCC	2 cut(s)	41, 121
HapII	CCGG	1 cut(s)	557
Hin1II	CATG	3 cut(s)	281, 585, 626
HincII	GTYRAC	1 cut(s)	763
HindII	GTYRAC	1 cut(s)	763
HpaII	CCGG	1 cut(s)	557
HphI	GGTGA	2 cut(s)	121, 518
Hpy166II	GTNNAC	1 cut(s)	763
Hpy188I	TCNGA	1 cut(s)	170
Hpy188III	TCNNGA	1 cut(s)	313
Hpy8I	GTNNAC	1 cut(s)	763
HpyAV	CCTTC	4 cut(s)	248, 294, 366, 620
HpyCH4III	ACNGT	1 cut(s)	300
HpyCH4V	TGCA	7 cut(s)	462, 512, 537, 674, 749, 782, 794
HpyF10VI	GCNNNNNNNGC	4 cut(s)	203, 212, 688, 800
HpyF3I	CTNAG	2 cut(s)	527, 828
Hsp92II	CATG	3 cut(s)	281, 585, 626
Ksp22I	TGATCA	1 cut(s)	604
Kzo9I	GATC	6 cut(s)	144, 165, 544, 574, 604, 811
LmnI	GCTCC	1 cut(s)	69
LpnPI	CCDG	9 cut(s)	111, 268, 283, 489, 500, 516, 534, 570, 642
Lsp1109I	GCAGC	6 cut(s)	84, 87, 214, 218, 474, 686
LweI	GCATC	3 cut(s)	499, 781, 790
MaeI	CTAG	5 cut(s)	393, 399, 441, 474, 819
MaeIII	GTNAC	2 cut(s)	443, 663
MalI	GATC	6 cut(s)	146, 167, 546, 576, 606, 813
MboI	GATC	6 cut(s)	144, 165, 544, 574, 604, 811
MboII	GAAGA	4 cut(s)	40, 175, 539, 806
MflI	RGATCY	2 cut(s)	544, 811
MluCI	AATT	5 cut(s)	289, 402, 457, 587, 698
MnlI	CCTC	9 cut(s)	24, 60, 193, 245, 329, 332, 490, 536, 706
Mph1103I	ATGCAT	2 cut(s)	514, 784
MseI	TTAA	2 cut(s)	593, 638
MslI	CAYNNNNRTG	2 cut(s)	621, 659
MspA1I	CMGCKG	1 cut(s)	691
MspCI	CTTAAG	1 cut(s)	592
MspI	CCGG	1 cut(s)	557
MspR9I	CCNGG	1 cut(s)	504
Mva1269I	GAATGC	1 cut(s)	784
MvaI	CCWGG	1 cut(s)	504
MvnI	CGCG	1 cut(s)	710
MwoI	GCNNNNNNNGC	4 cut(s)	203, 212, 688, 800
NcoI	CCATGG	1 cut(s)	581
NdeI	CATATG	1 cut(s)	784
NdeII	GATC	6 cut(s)	144, 165, 544, 574, 604, 811
NlaIII	CATG	3 cut(s)	281, 585, 626
NlaIV	GGNNCC	1 cut(s)	501
NmeAIII	GCCGAG	2 cut(s)	67, 223
NmuCI	GTSAC	1 cut(s)	663
NsiI	ATGCAT	2 cut(s)	514, 784
NspV	TTCGAA	3 cut(s)	189, 248, 702
OliI	CACNNNNGTG	1 cut(s)	659
PaeR7I	CTCGAG	1 cut(s)	210
PcsI	WCGNNNNNNNCGW	2 cut(s)	195, 762
PctI	GAATGC	1 cut(s)	784
PkrI	GCNGC	6 cut(s)	74, 77, 208, 229, 464, 676
PpuMI	RGGWCCY	1 cut(s)	499
Psp5II	RGGWCCY	1 cut(s)	499
Psp6I	CCWGG	1 cut(s)	502
PspGI	CCWGG	1 cut(s)	502
PspN4I	GGNNCC	1 cut(s)	501
PspPI	GGNCC	1 cut(s)	499
PspPPI	RGGWCCY	1 cut(s)	499
PspXI	VCTCGAGB	1 cut(s)	210
PsrI	GAACNNNNNNTAC	2 cut(s)	250, 282
PstNI	CAGNNNCTG	1 cut(s)	534
PsuI	RGATCY	2 cut(s)	544, 811
PvuII	CAGCTG	1 cut(s)	691
RsaI	GTAC	5 cut(s)	274, 397, 412, 555, 770
RsaNI	GTAC	5 cut(s)	273, 396, 411, 554, 769
RseI	CAYNNNNRTG	2 cut(s)	621, 659
SaqAI	TTAA	2 cut(s)	593, 638
SatI	GCNGC	6 cut(s)	73, 76, 207, 228, 463, 675
Sau3AI	GATC	6 cut(s)	144, 165, 544, 574, 604, 811
Sau96I	GGNCC	1 cut(s)	499
ScaI	AGTACT	4 cut(s)	274, 397, 412, 770
ScrFI	CCNGG	1 cut(s)	504
SfaNI	GCATC	3 cut(s)	499, 781, 790
Sfr274I	CTCGAG	1 cut(s)	210
SfuI	TTCGAA	3 cut(s)	189, 248, 702
SinI	GGWCC	1 cut(s)	499
SlaI	CTCGAG	1 cut(s)	210
SmiMI	CAYNNNNRTG	2 cut(s)	621, 659
SmlI	CTYRAG	2 cut(s)	210, 592
SmoI	CTYRAG	2 cut(s)	210, 592
Sse9I	AATT	5 cut(s)	289, 402, 457, 587, 698
SsiI	CCGC	3 cut(s)	597, 614, 710
SspI	AATATT	1 cut(s)	430
SspMI	CTAG	5 cut(s)	393, 399, 441, 474, 819
StyD4I	CCNGG	1 cut(s)	502
StyI	CCWWGG	2 cut(s)	581, 841
TaaI	ACNGT	1 cut(s)	300
TaqI	TCGA	5 cut(s)	189, 211, 248, 573, 702
TasI	AATT	5 cut(s)	289, 402, 457, 587, 698
TatI	WGTACW	4 cut(s)	272, 395, 410, 768
Tru1I	TTAA	2 cut(s)	593, 638
Tru9I	TTAA	2 cut(s)	593, 638
TscAI	CASTG	2 cut(s)	303, 661
TseFI	GTSAC	1 cut(s)	663
TseI	GCWGC	6 cut(s)	72, 75, 206, 227, 462, 674
Tsp45I	GTSAC	1 cut(s)	663
TspDTI	ATGAA	5 cut(s)	237, 422, 639, 729, 767
TspRI	CASTG	2 cut(s)	303, 661
Vha464I	CTTAAG	1 cut(s)	592
VpaK11BI	GGWCC	1 cut(s)	499
XapI	RAATTY	2 cut(s)	289, 698
XhoI	CTCGAG	1 cut(s)	210
XspI	CTAG	5 cut(s)	393, 399, 441, 474, 819
ZrmI	AGTACT	4 cut(s)	274, 397, 412, 770
Zsp2I	ATGCAT	2 cut(s)	514, 784

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.