Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0005037

Physical Location & Seq

Genomic Coordinates Forward (+)

1446678 .. 1447987

Gene Structure 1310 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g02490.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGAGTTTCAGTTCCAGCAGCAGAAACAGATTTCATTTCCAGCGGGGGCTCAAACACATAGAGCTTCAGGCATTCCAATAAGCAGGAAAGGCAATAAGTTGAAGGGAGGCAAAAATAGAAGCAACAACATTAACAAGTTTGTTGGGGTGAGACAAAGACCTTCAGGGAGATGGGTAGCTGAGATCAAAGACACAACACAAAAGATCAGGATGTGGCTTGGAACCTTTGAAACTGCTGAAGAGGCTGCTCGAGCTTACGATGAAGCTGCTTGCCTTCTTCGTGGCAACAACACTAGGACCAACTTCATCACTCATGTCTCTTTGGATTCCCCTCTTGCTTCTCGAATCCAAAATCTCCTCAACACCAAGAAGCCAGGACCCAATTGTAAACAACAAATCCAAAGGACTAGTAGTACTACTTCTAGTACTGCCTCTCATCCCCCAACAGCTAAAAGTACCAGCAGCACTAGTACTAGTACTAGTTCCACTAGCAAGAGTTGTGTTTCCAGTGAGGTATCGAATCAAGAGTCGTCAAATCATCAATTTTCTGATGTATACAAACCAGACTTAAGCAACTGCCATCAGCACCCTTTTGATCAGTTGAGTACTAGTACTACTTCTTCTTCCTCTTACCAATCCAATCTTTCTTGGGGTGATGGATTCTCATTTGCTCAACAAATGTTTGAGACACCAAAAGATGAAGCTGCTTTGTCGACCGAATTAACTTCAGTTGATGAAGGTGGTGATTCGGATGACTTGTTGGAATTCGAAAGGATGAAAGTCGAAAGACAGATATCAGCTTCATTGTATGCTATGAATGGTGTGCAAGAGTATATGGACACAATTCATGATGCAAATGAAGCTCTTTGGGATCTTCAACCATTCTGTGCTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009791 GO:0009877 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0035864 GO:0035865 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048518 GO:0048522 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0080090 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

299

Amino Acids

32.94

Weight (kDa)

6.39

Isoelectric Point (pI)

44.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	46 - 95	1.9e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19790
fragaria_vesca	FvH4_6g02490
malus_domestica	MD03G1004500.v1.1 MD11G1005200.v1.1 MD12G1004600.v1.1 MD14G1003100.v1.1
prunus_persica	Prupe.6G004400_v2.0.a1 Prupe.7G004900_v2.0.a1
pyrus_communis	pycom03g00470 pycom11g00430 pycom14g00100
rosa_chinensis	RchiOBHm_Chr3g0450351 RchiOBHm_Chr5g0083271
rosa_laevigata	RLG00000025736 RLG00000037025
rosa_multiflora	Rmu_sc0000330.1_g000004 Rmu_sc0011792.1_g000007
rosa_roxburghii	Rroxscaffold_1G00001220 Rroxscaffold_6G00428080
rosa_rugosa	Rorug02G0627100.1 Rorug05G0483900
rosa_samantha	Rh3AG027500 Rh3BG028200 Rh3CG026900 Rh3DG028100 Rh5BG560600 Rh5CG583300 Rh5DG569900
rosa_wichuraiana	Rw3G002140 Rw5G049960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	555, 713
AciI	CCGC	1 cut(s)	44
AclWI	GGATC	1 cut(s)	879
AcsI	RAATTY	1 cut(s)	764
AcuI	CTGAAG	4 cut(s)	51, 147, 258, 711
AfaI	GTAC	7 cut(s)	415, 427, 457, 472, 478, 607, 613
AflII	CTTAAG	1 cut(s)	568
AgsI	TTSAA	3 cut(s)	103, 230, 878
AhlI	ACTAGT	5 cut(s)	407, 467, 473, 479, 608
AjnI	CCWGG	1 cut(s)	373
AloI	GAACNNNNNNTCC	1 cut(s)	28
AluBI	AGCT	8 cut(s)	65, 179, 254, 266, 449, 704, 800, 863
AluI	AGCT	8 cut(s)	65, 179, 254, 266, 449, 704, 800, 863
Alw26I	GTCTC	3 cut(s)	145, 322, 680
AlwI	GGATC	1 cut(s)	879
Ama87I	CYCGRG	1 cut(s)	249
ApeKI	GCWGC	5 cut(s)	19, 245, 266, 462, 704
ApoI	RAATTY	1 cut(s)	764
ArsI	GACNNNNNNTTYG	2 cut(s)	512, 544
AspS9I	GGNCC	2 cut(s)	297, 377
AsuHPI	GGTGA	3 cut(s)	160, 665, 755
AsuII	TTCGAA	1 cut(s)	768
AvaI	CYCGRG	1 cut(s)	249
AvaII	GGWCC	2 cut(s)	297, 377
BanII	GRGCYC	1 cut(s)	52
BarI	GAAGNNNNNNTAC	4 cut(s)	403, 435, 604, 636
BbvI	GCAGC	5 cut(s)	31, 232, 253, 474, 691
BccI	CCATC	3 cut(s)	165, 588, 650
BcgI	CGANNNNNNTGC	2 cut(s)	248, 282
BciT130I	CCWGG	1 cut(s)	375
BclI	TGATCA	1 cut(s)	595
BcoDI	GTCTC	3 cut(s)	145, 322, 680
BcuI	ACTAGT	5 cut(s)	407, 467, 473, 479, 608
BfaI	CTAG	8 cut(s)	294, 408, 423, 468, 474, 480, 489, 609
BfrI	CTTAAG	1 cut(s)	568
BisI	GCNGC	5 cut(s)	20, 246, 267, 463, 705
BlsI	GCNGC	5 cut(s)	21, 247, 268, 464, 706
BmcAI	AGTACT	6 cut(s)	415, 427, 472, 478, 607, 613
Bme1390I	CCNGG	1 cut(s)	375
Bme18I	GGWCC	2 cut(s)	297, 377
BmeT110I	CYCGRG	1 cut(s)	249
BmgT120I	GGNCC	2 cut(s)	297, 377
BmiI	GGNNCC	2 cut(s)	223, 379
BmrFI	CCNGG	1 cut(s)	375
BmsI	GCATC	1 cut(s)	841
Bpu14I	TTCGAA	1 cut(s)	768
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bse1I	ACTGG	1 cut(s)	507
BseBI	CCWGG	1 cut(s)	375
BseGI	GGATG	4 cut(s)	216, 436, 757, 780
BseMII	CTCAG	1 cut(s)	171
BseNI	ACTGG	1 cut(s)	507
BseRI	GAGGAG	1 cut(s)	347
BseXI	GCAGC	5 cut(s)	31, 232, 253, 474, 691
Bsh1285I	CGRYCG	1 cut(s)	717
BsiEI	CGRYCG	1 cut(s)	717
BsiHKCI	CYCGRG	1 cut(s)	249
BsmAI	GTCTC	3 cut(s)	145, 322, 680
BsmI	GAATGC	1 cut(s)	72
BsoBI	CYCGRG	1 cut(s)	249
Bsp119I	TTCGAA	1 cut(s)	768
Bsp1286I	GDGCHC	1 cut(s)	52
Bsp143I	GATC	4 cut(s)	183, 204, 595, 871
BspACI	CCGC	1 cut(s)	44
BspCNI	CTCAG	1 cut(s)	172
BspHI	TCATGA	1 cut(s)	847
BspLI	GGNNCC	2 cut(s)	223, 379
BspPI	GGATC	1 cut(s)	879
BspT104I	TTCGAA	1 cut(s)	768
BspTI	CTTAAG	1 cut(s)	568
BsrI	ACTGG	1 cut(s)	507
BssMI	GATC	4 cut(s)	183, 204, 595, 871
BssNAI	GTATAC	1 cut(s)	556
Bst1107I	GTATAC	1 cut(s)	556
Bst2UI	CCWGG	1 cut(s)	375
Bst6I	CTCTTC	1 cut(s)	234
BstAFI	CTTAAG	1 cut(s)	568
BstBI	TTCGAA	1 cut(s)	768
BstC8I	GCNNGC	1 cut(s)	271
BstDEI	CTNAG	1 cut(s)	180
BstF5I	GGATG	4 cut(s)	216, 436, 757, 780
BstKTI	GATC	4 cut(s)	186, 207, 598, 874
BstMAI	GTCTC	3 cut(s)	145, 322, 680
BstMBI	GATC	4 cut(s)	183, 204, 595, 871
BstMCI	CGRYCG	1 cut(s)	717
BstMWI	GCNNNNNNNGC	4 cut(s)	90, 242, 251, 860
BstNI	CCWGG	1 cut(s)	375
BstSCI	CCNGG	1 cut(s)	373
BstV1I	GCAGC	5 cut(s)	31, 232, 253, 474, 691
BstX2I	RGATCY	1 cut(s)	871
BstYI	RGATCY	1 cut(s)	871
BstZ17I	GTATAC	1 cut(s)	556
BtsCI	GGATG	4 cut(s)	216, 436, 757, 780
BtsIMutI	CAGTG	1 cut(s)	514
Cac8I	GCNNGC	1 cut(s)	271
CciI	TCATGA	1 cut(s)	847
Cfr13I	GGNCC	2 cut(s)	297, 377
Csp6I	GTAC	7 cut(s)	414, 426, 456, 471, 477, 606, 612
CviAII	CATG	2 cut(s)	314, 848
CviQI	GTAC	7 cut(s)	414, 426, 456, 471, 477, 606, 612
DdeI	CTNAG	1 cut(s)	180
DpnI	GATC	4 cut(s)	185, 206, 597, 873
DpnII	GATC	4 cut(s)	183, 204, 595, 871
Eam1104I	CTCTTC	1 cut(s)	234
EarI	CTCTTC	1 cut(s)	234
Eco24I	GRGCYC	1 cut(s)	52
Eco32I	GATATC	1 cut(s)	795
Eco47I	GGWCC	2 cut(s)	297, 377
Eco57I	CTGAAG	4 cut(s)	51, 147, 258, 711
Eco88I	CYCGRG	1 cut(s)	249
EcoO109I	RGGNCCY	1 cut(s)	377
EcoRI	GAATTC	1 cut(s)	764
EcoRII	CCWGG	1 cut(s)	373
EcoRV	GATATC	1 cut(s)	795
EcoT38I	GRGCYC	1 cut(s)	52
FaeI	CATG	2 cut(s)	317, 851
FaiI	YATR	8 cut(s)	60, 315, 556, 810, 815, 834, 836, 849
FatI	CATG	2 cut(s)	313, 847
FauI	CCCGC	1 cut(s)	37
FbaI	TGATCA	1 cut(s)	595
FblI	GTMKAC	2 cut(s)	555, 713
Fnu4HI	GCNGC	5 cut(s)	20, 246, 267, 463, 705
FokI	GGATG	4 cut(s)	223, 423, 764, 787
FriOI	GRGCYC	1 cut(s)	52
Fsp4HI	GCNGC	5 cut(s)	20, 246, 267, 463, 705
FspBI	CTAG	8 cut(s)	294, 408, 423, 468, 474, 480, 489, 609
GluI	GCNGC	5 cut(s)	20, 246, 267, 463, 705
Hin1II	CATG	2 cut(s)	317, 851
HincII	GTYRAC	1 cut(s)	714
HindII	GTYRAC	1 cut(s)	714
HinfI	GANTC	6 cut(s)	326, 345, 520, 527, 660, 746
HphI	GGTGA	3 cut(s)	160, 665, 755
Hpy166II	GTNNAC	3 cut(s)	389, 556, 714
Hpy188I	TCNGA	2 cut(s)	550, 751
Hpy188III	TCNNGA	4 cut(s)	208, 342, 524, 848
Hpy8I	GTNNAC	3 cut(s)	389, 556, 714
HpyAV	CCTTC	4 cut(s)	97, 171, 284, 731
HpyCH4V	TGCA	2 cut(s)	826, 854
HpyF10VI	GCNNNNNNNGC	4 cut(s)	90, 242, 251, 860
HpyF3I	CTNAG	1 cut(s)	180
Hsp92II	CATG	2 cut(s)	317, 851
Ksp22I	TGATCA	1 cut(s)	595
Kzo9I	GATC	4 cut(s)	183, 204, 595, 871
Lsp1109I	GCAGC	5 cut(s)	31, 232, 253, 474, 691
LweI	GCATC	1 cut(s)	841
MaeI	CTAG	8 cut(s)	294, 408, 423, 468, 474, 480, 489, 609
MalI	GATC	4 cut(s)	185, 206, 597, 873
MboI	GATC	4 cut(s)	183, 204, 595, 871
MboII	GAAGA	5 cut(s)	251, 269, 612, 615, 866
MfeI	CAATTG	1 cut(s)	382
MflI	RGATCY	1 cut(s)	871
MhlI	GDGCHC	1 cut(s)	52
MluCI	AATT	5 cut(s)	382, 542, 719, 764, 843
MlyI	GAGTC	1 cut(s)	536
MmeI	TCCRAC	1 cut(s)	741
MnlI	CCTC	7 cut(s)	101, 235, 342, 368, 442, 505, 637
MseI	TTAA	3 cut(s)	132, 569, 722
MspA1I	CMGCKG	1 cut(s)	44
MspCI	CTTAAG	1 cut(s)	568
MspR9I	CCNGG	1 cut(s)	375
MunI	CAATTG	1 cut(s)	382
Mva1269I	GAATGC	1 cut(s)	72
MvaI	CCWGG	1 cut(s)	375
MwoI	GCNNNNNNNGC	4 cut(s)	90, 242, 251, 860
NdeII	GATC	4 cut(s)	183, 204, 595, 871
NlaIII	CATG	2 cut(s)	317, 851
NlaIV	GGNNCC	2 cut(s)	223, 379
NspV	TTCGAA	1 cut(s)	768
PaeR7I	CTCGAG	1 cut(s)	249
PagI	TCATGA	1 cut(s)	847
PctI	GAATGC	1 cut(s)	72
PfeI	GAWTC	5 cut(s)	326, 345, 520, 660, 746
PkrI	GCNGC	5 cut(s)	21, 247, 268, 464, 706
PleI	GAGTC	1 cut(s)	535
PpsI	GAGTC	1 cut(s)	535
PpuMI	RGGWCCY	1 cut(s)	377
Psp5II	RGGWCCY	1 cut(s)	377
Psp6I	CCWGG	1 cut(s)	373
PspGI	CCWGG	1 cut(s)	373
PspN4I	GGNNCC	2 cut(s)	223, 379
PspPI	GGNCC	2 cut(s)	297, 377
PspPPI	RGGWCCY	1 cut(s)	377
PspXI	VCTCGAGB	1 cut(s)	249
PsuI	RGATCY	1 cut(s)	871
RsaI	GTAC	7 cut(s)	415, 427, 457, 472, 478, 607, 613
RsaNI	GTAC	7 cut(s)	414, 426, 456, 471, 477, 606, 612
SalI	GTCGAC	1 cut(s)	712
SaqAI	TTAA	3 cut(s)	132, 569, 722
SatI	GCNGC	5 cut(s)	20, 246, 267, 463, 705
Sau3AI	GATC	4 cut(s)	183, 204, 595, 871
Sau96I	GGNCC	2 cut(s)	297, 377
ScaI	AGTACT	6 cut(s)	415, 427, 472, 478, 607, 613
SchI	GAGTC	1 cut(s)	536
ScrFI	CCNGG	1 cut(s)	375
SduI	GDGCHC	1 cut(s)	52
SfaNI	GCATC	1 cut(s)	841
Sfr274I	CTCGAG	1 cut(s)	249
SfuI	TTCGAA	1 cut(s)	768
SinI	GGWCC	2 cut(s)	297, 377
SlaI	CTCGAG	1 cut(s)	249
SmlI	CTYRAG	2 cut(s)	249, 568
SmoI	CTYRAG	2 cut(s)	249, 568
SpeI	ACTAGT	5 cut(s)	407, 467, 473, 479, 608
Sse9I	AATT	5 cut(s)	382, 542, 719, 764, 843
SsiI	CCGC	1 cut(s)	44
SspMI	CTAG	8 cut(s)	294, 408, 423, 468, 474, 480, 489, 609
StyD4I	CCNGG	1 cut(s)	373
TaqI	TCGA	6 cut(s)	250, 343, 518, 713, 768, 783
TaqII	GACCGA	1 cut(s)	731
TasI	AATT	5 cut(s)	382, 542, 719, 764, 843
TatI	WGTACW	6 cut(s)	413, 425, 470, 476, 605, 611
TfiI	GAWTC	5 cut(s)	326, 345, 520, 660, 746
Tru1I	TTAA	3 cut(s)	132, 569, 722
Tru9I	TTAA	3 cut(s)	132, 569, 722
TscAI	CASTG	1 cut(s)	514
TseI	GCWGC	5 cut(s)	19, 245, 266, 462, 704
TspRI	CASTG	1 cut(s)	514
Vha464I	CTTAAG	1 cut(s)	568
VpaK11BI	GGWCC	2 cut(s)	297, 377
XapI	RAATTY	1 cut(s)	764
XhoI	CTCGAG	1 cut(s)	249
XmiI	GTMKAC	2 cut(s)	555, 713
XspI	CTAG	8 cut(s)	294, 408, 423, 468, 474, 480, 489, 609
ZrmI	AGTACT	6 cut(s)	415, 427, 472, 478, 607, 613

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.