Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0005037

Physical Location & Seq

Genomic Coordinates Reverse (-)

326098 .. 326954

Gene Structure 857 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g00430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGAACATCAAGCCCCGAAGCAGCAAAAGGGAGTCTTAGCCAACAAACAAAGAAAGTTCAAAGAGAGGACCAAATCCAAGTGCAAGTTCGTCGGGGTGAGACAAAGGCCATCCGGGAAGTGGGTTATAAGAATGTGGCTTGGAACCTTTGAGACTGCCGAGGAAGCTGCTCGAGCTTACGACGAGGCTGCTTACCTTCTTCGGGGTTCGAATACCCGAACCAACTTCGCCACTCATGTCCCTTCTAACTCTCCACTTTCTTTGAAGATCAGAAACCTCCTCAACCAGAAAAAGAGCTTGAAGCAATGCCCTGTAAGTTCCACCCCCAACAGCTTAAATTCCACCCCTACAGCTACTAGTACTAGAACTAGTAACAAATATACCTCTTTCAGTGACGGTTCAGCTATCTCCATTGCTACTTTTAGTGAAACTTTTCTGCCTAATTGCAAAAGCCAGAAAAATGTTCAGGTGTTTGATGATGCATATAGACCAGACATTAGCAACTGCATTGATGATCTTCAACCAGAGTTGTTTCGTAACCATTTTGGTCTCCAGTGGCCACTCTTAACTGGGTTTGATCAGCTTCCAATAACCCATGAAGGGATGGATTTAGCGAAAGGCAATGCTGTGACGATGCAACCTAGTGTTGCAGTAGAGCCAGAGGTGACGGAATTTGAGTGCTTGGAGGTAGAAAGGCAGATGTCGGCTTCATTTTATACAATGAATGCAGTGAATGAGTACTTTGACAATGAGTACAATGCCGGTGATGCTCTCTGGGATCTTCCTAGTCTCTCTCAACCGTTCTGCCTAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009791 GO:0009877 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0035864 GO:0035865 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048519 GO:0048523 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0080090 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

272

Amino Acids

30.47

Weight (kDa)

7.59

Isoelectric Point (pI)

41.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	28 - 69	5.3e-06	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19790
fragaria_vesca	FvH4_6g02490
malus_domestica	MD03G1004500.v1.1 MD11G1005200.v1.1 MD12G1004600.v1.1 MD14G1003100.v1.1
prunus_persica	Prupe.6G004400_v2.0.a1 Prupe.7G004900_v2.0.a1
pyrus_communis	pycom03g00470 pycom11g00430 pycom14g00100
rosa_chinensis	RchiOBHm_Chr3g0450351 RchiOBHm_Chr5g0083271
rosa_laevigata	RLG00000025736 RLG00000037025
rosa_multiflora	Rmu_sc0000330.1_g000004 Rmu_sc0011792.1_g000007
rosa_roxburghii	Rroxscaffold_1G00001220 Rroxscaffold_6G00428080
rosa_rugosa	Rorug02G0627100.1 Rorug05G0483900
rosa_samantha	Rh3AG027500 Rh3BG028200 Rh3CG026900 Rh3DG028100 Rh5BG560600 Rh5CG583300 Rh5DG569900
rosa_wichuraiana	Rw3G002140 Rw5G049960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	128
AclWI	GGATC	1 cut(s)	786
AcoI	YGGCCR	1 cut(s)	557
AcsI	RAATTY	2 cut(s)	337, 671
AfaI	GTAC	3 cut(s)	361, 740, 755
AfiI	CCNNNNNNNGG	3 cut(s)	120, 202, 600
AgsI	TTSAA	4 cut(s)	61, 265, 301, 521
AhlI	ACTAGT	2 cut(s)	356, 368
AjuI	GAANNNNNNNTTGG	2 cut(s)	71, 103
AluBI	AGCT	7 cut(s)	167, 176, 297, 333, 353, 404, 583
AluI	AGCT	7 cut(s)	167, 176, 297, 333, 353, 404, 583
Alw26I	GTCTC	4 cut(s)	94, 146, 554, 794
AlwI	GGATC	1 cut(s)	786
Ama87I	CYCGRG	1 cut(s)	171
AoxI	GGCC	2 cut(s)	107, 557
ApeKI	GCWGC	3 cut(s)	22, 167, 188
ApoI	RAATTY	2 cut(s)	337, 671
Asp700I	GAANNNNTTC	1 cut(s)	432
AspA2I	CCTAGG	1 cut(s)	808
AspS9I	GGNCC	1 cut(s)	69
AsuC2I	CCSGG	1 cut(s)	115
AsuHPI	GGTGA	3 cut(s)	109, 676, 776
AsuII	TTCGAA	1 cut(s)	209
AvaI	CYCGRG	1 cut(s)	171
AvaII	GGWCC	1 cut(s)	69
AvrII	CCTAGG	1 cut(s)	808
BalI	TGGCCA	1 cut(s)	559
BbvI	GCAGC	3 cut(s)	34, 154, 175
BccI	CCATC	2 cut(s)	118, 598
BcgI	CGANNNNNNTGC	6 cut(s)	73, 107, 149, 170, 183, 204
BclI	TGATCA	1 cut(s)	577
BcnI	CCSGG	1 cut(s)	115
BcoDI	GTCTC	4 cut(s)	94, 146, 554, 794
BcuI	ACTAGT	2 cut(s)	356, 368
BfaI	CTAG	6 cut(s)	357, 363, 369, 642, 786, 809
BfmI	CTRYAG	1 cut(s)	348
BisI	GCNGC	3 cut(s)	23, 168, 189
BlnI	CCTAGG	1 cut(s)	808
BlsI	GCNGC	3 cut(s)	24, 169, 190
BmcAI	AGTACT	2 cut(s)	361, 740
Bme1390I	CCNGG	1 cut(s)	115
Bme18I	GGWCC	1 cut(s)	69
BmeT110I	CYCGRG	1 cut(s)	171
BmgT120I	GGNCC	1 cut(s)	69
BmiI	GGNNCC	1 cut(s)	145
BmrFI	CCNGG	1 cut(s)	115
BmrI	ACTGGG	1 cut(s)	579
BmsI	GCATC	3 cut(s)	469, 624, 757
BmuI	ACTGGG	1 cut(s)	579
BpmI	CTGGAG	1 cut(s)	536
Bpu14I	TTCGAA	1 cut(s)	209
BpuMI	CCSGG	1 cut(s)	115
BsaI	GGTCTC	1 cut(s)	554
BsaJI	CCNNGG	2 cut(s)	159, 808
Bsc4I	CCNNNNNNNGG	3 cut(s)	120, 202, 600
Bse118I	RCCGGY	1 cut(s)	761
Bse1I	ACTGG	2 cut(s)	553, 574
Bse3DI	GCAATG	3 cut(s)	311, 411, 628
BseDI	CCNNGG	2 cut(s)	159, 808
BseGI	GGATG	2 cut(s)	110, 609
BseLI	CCNNNNNNNGG	3 cut(s)	120, 202, 600
BseMI	GCAATG	3 cut(s)	311, 411, 628
BseNI	ACTGG	2 cut(s)	553, 574
BseRI	GAGGAG	1 cut(s)	269
BseXI	GCAGC	3 cut(s)	34, 154, 175
BshFI	GGCC	2 cut(s)	109, 559
BsiHKCI	CYCGRG	1 cut(s)	171
BsiSI	CCGG	2 cut(s)	114, 762
BslFI	GGGAC	1 cut(s)	224
BslI	CCNNNNNNNGG	3 cut(s)	120, 202, 600
BsmAI	GTCTC	4 cut(s)	94, 146, 554, 794
BsmFI	GGGAC	1 cut(s)	224
BsmI	GAATGC	1 cut(s)	730
BsnI	GGCC	2 cut(s)	109, 559
Bso31I	GGTCTC	1 cut(s)	554
BsoBI	CYCGRG	1 cut(s)	171
Bsp119I	TTCGAA	1 cut(s)	209
Bsp143I	GATC	4 cut(s)	267, 514, 577, 778
BspANI	GGCC	2 cut(s)	109, 559
BspLI	GGNNCC	1 cut(s)	145
BspPI	GGATC	1 cut(s)	786
BspT104I	TTCGAA	1 cut(s)	209
BspTNI	GGTCTC	1 cut(s)	554
BsrDI	GCAATG	3 cut(s)	311, 411, 628
BsrFI	RCCGGY	1 cut(s)	761
BsrI	ACTGG	2 cut(s)	553, 574
BssAI	RCCGGY	1 cut(s)	761
BssECI	CCNNGG	2 cut(s)	159, 808
BssMI	GATC	4 cut(s)	267, 514, 577, 778
BssT1I	CCWWGG	1 cut(s)	808
Bst4CI	ACNGT	2 cut(s)	398, 801
BstBI	TTCGAA	1 cut(s)	209
BstDEI	CTNAG	1 cut(s)	37
BstF5I	GGATG	2 cut(s)	110, 609
BstKTI	GATC	4 cut(s)	270, 517, 580, 781
BstMAI	GTCTC	4 cut(s)	94, 146, 554, 794
BstMBI	GATC	4 cut(s)	267, 514, 577, 778
BstMWI	GCNNNNNNNGC	3 cut(s)	164, 173, 767
BstSCI	CCNGG	1 cut(s)	113
BstSFI	CTRYAG	1 cut(s)	348
BstV1I	GCAGC	3 cut(s)	34, 154, 175
BstX2I	RGATCY	1 cut(s)	778
BstYI	RGATCY	1 cut(s)	778
BsuRI	GGCC	2 cut(s)	109, 559
BtsCI	GGATG	2 cut(s)	110, 609
BtsI	GCAGTG	1 cut(s)	735
BtsIMutI	CAGTG	3 cut(s)	397, 560, 735
Cfr10I	RCCGGY	1 cut(s)	761
Cfr13I	GGNCC	1 cut(s)	69
Csp6I	GTAC	3 cut(s)	360, 739, 754
CspCI	CAANNNNNGTGG	2 cut(s)	243, 278
CviAII	CATG	2 cut(s)	236, 596
CviQI	GTAC	3 cut(s)	360, 739, 754
DdeI	CTNAG	1 cut(s)	37
DpnI	GATC	4 cut(s)	269, 516, 579, 780
DpnII	GATC	4 cut(s)	267, 514, 577, 778
EaeI	YGGCCR	1 cut(s)	557
Eco130I	CCWWGG	1 cut(s)	808
Eco31I	GGTCTC	1 cut(s)	554
Eco47I	GGWCC	1 cut(s)	69
Eco88I	CYCGRG	1 cut(s)	171
EcoT14I	CCWWGG	1 cut(s)	808
EcoT22I	ATGCAT	1 cut(s)	484
ErhI	CCWWGG	1 cut(s)	808
FaeI	CATG	2 cut(s)	239, 599
FaiI	YATR	7 cut(s)	128, 237, 381, 484, 486, 597, 717
FalI	AAGNNNNNCTT	2 cut(s)	20, 52
FaqI	GGGAC	1 cut(s)	224
FatI	CATG	2 cut(s)	235, 595
FbaI	TGATCA	1 cut(s)	577
Fnu4HI	GCNGC	3 cut(s)	23, 168, 189
FokI	GGATG	2 cut(s)	97, 616
Fsp4HI	GCNGC	3 cut(s)	23, 168, 189
FspBI	CTAG	6 cut(s)	357, 363, 369, 642, 786, 809
GluI	GCNGC	3 cut(s)	23, 168, 189
GsuI	CTGGAG	1 cut(s)	536
HaeIII	GGCC	2 cut(s)	109, 559
HapII	CCGG	2 cut(s)	114, 762
Hin1II	CATG	2 cut(s)	239, 599
HinfI	GANTC	1 cut(s)	33
HpaII	CCGG	2 cut(s)	114, 762
HphI	GGTGA	3 cut(s)	109, 676, 776
Hpy188I	TCNGA	1 cut(s)	272
Hpy99I	CGWCG	2 cut(s)	95, 185
HpyAV	CCTTC	3 cut(s)	206, 252, 593
HpyCH4III	ACNGT	2 cut(s)	398, 801
HpyCH4V	TGCA	7 cut(s)	84, 447, 482, 507, 637, 650, 728
HpyF10VI	GCNNNNNNNGC	3 cut(s)	164, 173, 767
HpyF3I	CTNAG	1 cut(s)	37
Hsp92II	CATG	2 cut(s)	239, 599
Ksp22I	TGATCA	1 cut(s)	577
Kzo9I	GATC	4 cut(s)	267, 514, 577, 778
Lsp1109I	GCAGC	3 cut(s)	34, 154, 175
LweI	GCATC	3 cut(s)	469, 624, 757
MaeI	CTAG	6 cut(s)	357, 363, 369, 642, 786, 809
MaeIII	GTNAC	5 cut(s)	371, 392, 536, 628, 664
MalI	GATC	4 cut(s)	269, 516, 579, 780
MboI	GATC	4 cut(s)	267, 514, 577, 778
MboII	GAAGA	4 cut(s)	191, 277, 509, 773
MflI	RGATCY	1 cut(s)	778
MlsI	TGGCCA	1 cut(s)	559
MluCI	AATT	3 cut(s)	337, 442, 671
MluNI	TGGCCA	1 cut(s)	559
MlyI	GAGTC	1 cut(s)	42
MnlI	CCTC	8 cut(s)	60, 154, 178, 287, 290, 394, 655, 679
Mox20I	TGGCCA	1 cut(s)	559
Mph1103I	ATGCAT	1 cut(s)	484
MroXI	GAANNNNTTC	1 cut(s)	432
MscI	TGGCCA	1 cut(s)	559
MseI	TTAA	2 cut(s)	335, 566
Msp20I	TGGCCA	1 cut(s)	559
MspI	CCGG	2 cut(s)	114, 762
MspR9I	CCNGG	1 cut(s)	115
Mva1269I	GAATGC	1 cut(s)	730
MwoI	GCNNNNNNNGC	3 cut(s)	164, 173, 767
NciI	CCSGG	1 cut(s)	115
NdeII	GATC	4 cut(s)	267, 514, 577, 778
NlaIII	CATG	2 cut(s)	239, 599
NlaIV	GGNNCC	1 cut(s)	145
NmeAIII	GCCGAG	1 cut(s)	184
NmuCI	GTSAC	3 cut(s)	392, 628, 664
NsiI	ATGCAT	1 cut(s)	484
NspV	TTCGAA	1 cut(s)	209
PaeR7I	CTCGAG	1 cut(s)	171
PctI	GAATGC	1 cut(s)	730
PdmI	GAANNNNTTC	1 cut(s)	432
PfoI	TCCNGGA	1 cut(s)	113
PkrI	GCNGC	3 cut(s)	24, 169, 190
PleI	GAGTC	1 cut(s)	41
PpsI	GAGTC	1 cut(s)	41
PsiI	TTATAA	1 cut(s)	128
PspN4I	GGNNCC	1 cut(s)	145
PspPI	GGNCC	1 cut(s)	69
PspXI	VCTCGAGB	1 cut(s)	171
PsuI	RGATCY	1 cut(s)	778
RsaI	GTAC	3 cut(s)	361, 740, 755
RsaNI	GTAC	3 cut(s)	360, 739, 754
SaqAI	TTAA	2 cut(s)	335, 566
SatI	GCNGC	3 cut(s)	23, 168, 189
Sau3AI	GATC	4 cut(s)	267, 514, 577, 778
Sau96I	GGNCC	1 cut(s)	69
ScaI	AGTACT	2 cut(s)	361, 740
SchI	GAGTC	1 cut(s)	42
ScrFI	CCNGG	1 cut(s)	115
SfaNI	GCATC	3 cut(s)	469, 624, 757
SfcI	CTRYAG	1 cut(s)	348
Sfr274I	CTCGAG	1 cut(s)	171
SfuI	TTCGAA	1 cut(s)	209
SinI	GGWCC	1 cut(s)	69
SlaI	CTCGAG	1 cut(s)	171
SmlI	CTYRAG	1 cut(s)	171
SmoI	CTYRAG	1 cut(s)	171
SpeI	ACTAGT	2 cut(s)	356, 368
Sse9I	AATT	3 cut(s)	337, 442, 671
SspMI	CTAG	6 cut(s)	357, 363, 369, 642, 786, 809
StyD4I	CCNGG	1 cut(s)	113
StyI	CCWWGG	1 cut(s)	808
TaaI	ACNGT	2 cut(s)	398, 801
TaqI	TCGA	2 cut(s)	172, 209
TasI	AATT	3 cut(s)	337, 442, 671
TatI	WGTACW	3 cut(s)	359, 738, 753
Tru1I	TTAA	2 cut(s)	335, 566
Tru9I	TTAA	2 cut(s)	335, 566
TscAI	CASTG	3 cut(s)	397, 560, 735
TseFI	GTSAC	3 cut(s)	392, 628, 664
TseI	GCWGC	3 cut(s)	22, 167, 188
Tsp45I	GTSAC	3 cut(s)	392, 628, 664
TspDTI	ATGAA	3 cut(s)	612, 699, 737
TspGWI	ACGGA	1 cut(s)	683
TspRI	CASTG	3 cut(s)	397, 560, 735
VpaK11BI	GGWCC	1 cut(s)	69
XapI	RAATTY	2 cut(s)	337, 671
XcmI	CCANNNNNNNNNTGG	1 cut(s)	117
XhoI	CTCGAG	1 cut(s)	171
XmaJI	CCTAGG	1 cut(s)	808
XmnI	GAANNNNTTC	1 cut(s)	432
XspI	CTAG	6 cut(s)	357, 363, 369, 642, 786, 809
ZrmI	AGTACT	2 cut(s)	361, 740
Zsp2I	ATGCAT	1 cut(s)	484

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.