Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0005037

Physical Location & Seq

Genomic Coordinates Reverse (-)

66610440 .. 66610871

Gene Structure 432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0483900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGAACCATTTTTCTAGAAAAATCCCGGCATCATTCACAGGTCTTAATTTCTTATCAAGGTTCAACGTCTCGTACAATAATCTCCGAGGACCAATACCATCAAGCACTCAGCTCCAAAGTTTCAATGCTTCTGCATTTGAGGGGAATTTGAAACTTTGTGGTGCCCCACTTCCAAATAAGTGTCAGACAACAACTGGTGCTGATGCACCTGATATGAGCACCCAAGATGTAGACACTAAGGAGCATCAAATTCCATGGTTTTATGTTTCTGTTGCACTTGGGTTCATTACAGGATTTTGGGGAGTCTGTGGTCCCTTGGTGCTTATGAGAAAGTGGAGGTATGCATATTACCATTTCCTAGACAATGTACAAGACAGGGTCCATGTGATGATAGCAAAGTGTATGGCAAGCATGAGGAGAAAGTTTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009791 GO:0009877 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0035864 GO:0035865 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048519 GO:0048523 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0080090 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

143

Amino Acids

16.22

Weight (kDa)

9.51

Isoelectric Point (pI)

30.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19790
fragaria_vesca	FvH4_6g02490
malus_domestica	MD03G1004500.v1.1 MD11G1005200.v1.1 MD12G1004600.v1.1 MD14G1003100.v1.1
prunus_persica	Prupe.6G004400_v2.0.a1 Prupe.7G004900_v2.0.a1
pyrus_communis	pycom03g00470 pycom11g00430 pycom14g00100
rosa_chinensis	RchiOBHm_Chr3g0450351 RchiOBHm_Chr5g0083271
rosa_laevigata	RLG00000025736 RLG00000037025
rosa_multiflora	Rmu_sc0000330.1_g000004 Rmu_sc0011792.1_g000007
rosa_roxburghii	Rroxscaffold_1G00001220 Rroxscaffold_6G00428080
rosa_rugosa	Rorug02G0627100.1 Rorug05G0483900
rosa_samantha	Rh3AG027500 Rh3BG028200 Rh3CG026900 Rh3DG028100 Rh5BG560600 Rh5CG583300 Rh5DG569900
rosa_wichuraiana	Rw3G002140 Rw5G049960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	161
AccI	GTMKAC	1 cut(s)	231
AcsI	RAATTY	2 cut(s)	145, 249
AfaI	GTAC	2 cut(s)	74, 369
AgsI	TTSAA	3 cut(s)	64, 124, 151
AluBI	AGCT	1 cut(s)	112
AluI	AGCT	1 cut(s)	112
Alw21I	GWGCWC	1 cut(s)	221
Alw26I	GTCTC	1 cut(s)	73
ApoI	RAATTY	2 cut(s)	145, 249
AspS9I	GGNCC	3 cut(s)	89, 311, 379
AsuC2I	CCSGG	1 cut(s)	26
AvaII	GGWCC	3 cut(s)	89, 311, 379
BaeGI	GKGCMC	1 cut(s)	166
BanI	GGYRCC	1 cut(s)	161
Bbv12I	GWGCWC	1 cut(s)	221
BccI	CCATC	1 cut(s)	106
BcnI	CCSGG	1 cut(s)	26
BcoDI	GTCTC	1 cut(s)	73
BfaI	CTAG	2 cut(s)	15, 359
Bme1390I	CCNGG	1 cut(s)	26
Bme18I	GGWCC	3 cut(s)	89, 311, 379
BmgT120I	GGNCC	3 cut(s)	89, 311, 379
BmiI	GGNNCC	3 cut(s)	163, 313, 380
BmrFI	CCNGG	1 cut(s)	26
BmsI	GCATC	3 cut(s)	38, 193, 253
BpuMI	CCSGG	1 cut(s)	26
BsaJI	CCNNGG	3 cut(s)	85, 254, 315
Bse1I	ACTGG	1 cut(s)	199
BseDI	CCNNGG	3 cut(s)	85, 254, 315
BseMII	CTCAG	1 cut(s)	122
BseNI	ACTGG	1 cut(s)	199
BseRI	GAGGAG	1 cut(s)	430
BseSI	GKGCMC	1 cut(s)	166
BshNI	GGYRCC	1 cut(s)	161
BsiHKAI	GWGCWC	1 cut(s)	221
BsiSI	CCGG	1 cut(s)	26
BslFI	GGGAC	1 cut(s)	297
BsmAI	GTCTC	1 cut(s)	73
BsmBI	CGTCTC	1 cut(s)	73
BsmFI	GGGAC	1 cut(s)	297
Bsp1286I	GDGCHC	2 cut(s)	166, 221
Bsp1407I	TGTACA	1 cut(s)	367
Bsp19I	CCATGG	1 cut(s)	254
BspCNI	CTCAG	1 cut(s)	121
BspLI	GGNNCC	3 cut(s)	163, 313, 380
BspT107I	GGYRCC	1 cut(s)	161
BsrGI	TGTACA	1 cut(s)	367
BsrI	ACTGG	1 cut(s)	199
BssECI	CCNNGG	3 cut(s)	85, 254, 315
BssT1I	CCWWGG	2 cut(s)	254, 315
BstAUI	TGTACA	1 cut(s)	367
BstC8I	GCNNGC	1 cut(s)	409
BstDEI	CTNAG	2 cut(s)	108, 237
BstDSI	CCRYGG	1 cut(s)	254
BstMAI	GTCTC	1 cut(s)	73
BstSCI	CCNGG	1 cut(s)	24
BstSLI	GKGCMC	1 cut(s)	166
BtgI	CCRYGG	1 cut(s)	254
Cac8I	GCNNGC	1 cut(s)	409
Cfr13I	GGNCC	3 cut(s)	89, 311, 379
Csp6I	GTAC	2 cut(s)	73, 368
CviAII	CATG	3 cut(s)	255, 383, 412
CviJI	RGCY	1 cut(s)	112
CviKI_1	RGCY	1 cut(s)	112
CviQI	GTAC	2 cut(s)	73, 368
DdeI	CTNAG	2 cut(s)	108, 237
Eco130I	CCWWGG	2 cut(s)	254, 315
Eco47I	GGWCC	3 cut(s)	89, 311, 379
EcoT14I	CCWWGG	2 cut(s)	254, 315
EcoT22I	ATGCAT	1 cut(s)	346
ErhI	CCWWGG	2 cut(s)	254, 315
Esp3I	CGTCTC	1 cut(s)	73
FaeI	CATG	3 cut(s)	258, 386, 415
FaiI	YATR	9 cut(s)	215, 256, 264, 326, 342, 346, 384, 404, 413
FaqI	GGGAC	1 cut(s)	297
FatI	CATG	3 cut(s)	254, 382, 411
FblI	GTMKAC	1 cut(s)	231
FspBI	CTAG	2 cut(s)	15, 359
HapII	CCGG	1 cut(s)	26
Hin1II	CATG	3 cut(s)	258, 386, 415
HinfI	GANTC	1 cut(s)	303
HpaII	CCGG	1 cut(s)	26
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188I	TCNGA	2 cut(s)	86, 186
Hpy188III	TCNNGA	1 cut(s)	15
Hpy8I	GTNNAC	1 cut(s)	232
HpyCH4IV	ACGT	1 cut(s)	66
HpyCH4V	TGCA	4 cut(s)	134, 206, 275, 344
HpyF3I	CTNAG	2 cut(s)	108, 237
HpySE526I	ACGT	1 cut(s)	66
Hsp92II	CATG	3 cut(s)	258, 386, 415
LmnI	GCTCC	2 cut(s)	117, 241
LpnPI	CCDG	6 cut(s)	24, 39, 180, 222, 276, 361
LweI	GCATC	3 cut(s)	38, 193, 253
MaeI	CTAG	2 cut(s)	15, 359
MaeII	ACGT	1 cut(s)	66
MhlI	GDGCHC	2 cut(s)	166, 221
MluCI	AATT	3 cut(s)	46, 145, 249
MlyI	GAGTC	1 cut(s)	312
MnlI	CCTC	4 cut(s)	80, 133, 330, 408
Mph1103I	ATGCAT	1 cut(s)	346
MseI	TTAA	1 cut(s)	45
MspI	CCGG	1 cut(s)	26
MspR9I	CCNGG	1 cut(s)	26
NciI	CCSGG	1 cut(s)	26
NcoI	CCATGG	1 cut(s)	254
NlaIII	CATG	3 cut(s)	258, 386, 415
NlaIV	GGNNCC	3 cut(s)	163, 313, 380
NsiI	ATGCAT	1 cut(s)	346
PflFI	GACNNNGTC	1 cut(s)	377
PleI	GAGTC	1 cut(s)	311
PpsI	GAGTC	1 cut(s)	311
PspN4I	GGNNCC	3 cut(s)	163, 313, 380
PspPI	GGNCC	3 cut(s)	89, 311, 379
PsyI	GACNNNGTC	1 cut(s)	377
RsaI	GTAC	2 cut(s)	74, 369
RsaNI	GTAC	2 cut(s)	73, 368
SaqAI	TTAA	1 cut(s)	45
Sau96I	GGNCC	3 cut(s)	89, 311, 379
SchI	GAGTC	1 cut(s)	312
ScrFI	CCNGG	1 cut(s)	26
SduI	GDGCHC	2 cut(s)	166, 221
SetI	ASST	6 cut(s)	43, 62, 69, 114, 211, 341
SfaNI	GCATC	3 cut(s)	38, 193, 253
SinI	GGWCC	3 cut(s)	89, 311, 379
Sse9I	AATT	3 cut(s)	46, 145, 249
SspMI	CTAG	2 cut(s)	15, 359
StyD4I	CCNGG	1 cut(s)	24
StyI	CCWWGG	2 cut(s)	254, 315
TaiI	ACGT	1 cut(s)	69
TasI	AATT	3 cut(s)	46, 145, 249
TatI	WGTACW	1 cut(s)	367
Tru1I	TTAA	1 cut(s)	45
Tru9I	TTAA	1 cut(s)	45
TspDTI	ATGAA	2 cut(s)	17, 274
Tth111I	GACNNNGTC	1 cut(s)	377
VpaK11BI	GGWCC	3 cut(s)	89, 311, 379
XapI	RAATTY	2 cut(s)	145, 249
XbaI	TCTAGA	1 cut(s)	14
XmiI	GTMKAC	1 cut(s)	231
XspI	CTAG	2 cut(s)	15, 359
Zsp2I	ATGCAT	1 cut(s)	346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.