Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0005037

Physical Location & Seq

Genomic Coordinates Forward (+)

404473 .. 405456

Gene Structure 984 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1003100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGAGTTTCAGTTCCAACGGCCGCAGCAAGTTTCCTTTGCAGCTGCAGGCATTCCAAAAAGCAGCAGCAAAGTAGGGAAGTTGAAGGGAAGAAATAATAATAGTAGAAGCAACAACAACGCAAACAAGTTTGTTGGCGTGAGACAGAGGCCTTCGGGGAGATGGGTTGCCGAGATCAAAGGCACTACTCAAAAAATAAGGATGTGGCTCGGAACCTTTGAGACCGCGGAGGAGGCTGCCCGTTCTTATGATGAAGCCGCCTGCCTTCTTCGCGGTTCAAACGCTCGAACCAACTTCATCACCCACGTATCTTTGGACTCCCCTCTCGCTTCTCGCATTCGGAATTTACTCAACACGAAAAAAGGAGGAGGAGGAGGAGGAGGAGGAGCCACTAAACAACTAGCACTACTACAACACCAAAGCAGTAGTACTAGCACTACTACTAGTACTAGTTCTGATCATGATCATCTGCCGCCTCCGTCTAAACAACTAGTACGTAAAAGTAGTACTAGTACTACTTGTACTTCAACTAGCAGCGGCAGCGACACAACTTCCCTTTCGAGCGAGGTGTTTCATGATAATTCTCTGCTGTTTGACGATGTCTACAAACCGGATTTGAGAAACTGCAACGAGGACTTTGAGTTGAGTTCTTCCTCCAATACTTCTCAATCCAACCTGCCTTCATGGGGGTCATATCAAACGGGGGTTGACTGCTTCTCGTTTGCTCAACAAGCGTTTGAGTTTCCGAAACATCAGGCGGCGGCTGCTTTGTCCTCGGCGGAGAGTAATACGACTACTACTAGTACTATTTGTACGGCAGGTGAAGCTGATTCGGGGCTGATGGATTTCGAAAGGTTGAAAGTGGAGAGACAGATATCGGCTTCGCTTTATGCAATGAATGGGATGCAAGAGTATATGGAAACAGTTCATGATCCTAACGAAGCGCTCTGGGATCTTCCGCCGCTGTGTTCTTTGTTCTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009791 GO:0009877 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0035864 GO:0035865 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048518 GO:0048522 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0080090 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

328

Amino Acids

35.46

Weight (kDa)

6.66

Isoelectric Point (pI)

47.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	43 - 92	1.7e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19790
fragaria_vesca	FvH4_6g02490
malus_domestica	MD03G1004500.v1.1 MD11G1005200.v1.1 MD12G1004600.v1.1 MD14G1003100.v1.1
prunus_persica	Prupe.6G004400_v2.0.a1 Prupe.7G004900_v2.0.a1
pyrus_communis	pycom03g00470 pycom11g00430 pycom14g00100
rosa_chinensis	RchiOBHm_Chr3g0450351 RchiOBHm_Chr5g0083271
rosa_laevigata	RLG00000025736 RLG00000037025
rosa_multiflora	Rmu_sc0000330.1_g000004 Rmu_sc0011792.1_g000007
rosa_roxburghii	Rroxscaffold_1G00001220 Rroxscaffold_6G00428080
rosa_rugosa	Rorug02G0627100.1 Rorug05G0483900
rosa_samantha	Rh3AG027500 Rh3BG028200 Rh3CG026900 Rh3DG028100 Rh5BG560600 Rh5CG583300 Rh5DG569900
rosa_wichuraiana	Rw3G002140 Rw5G049960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	809
Acc36I	ACCTGC	2 cut(s)	684, 809
AccI	GTMKAC	1 cut(s)	603
AccII	CGCG	2 cut(s)	227, 273
AclWI	GGATC	2 cut(s)	926, 960
AcoI	YGGCCR	1 cut(s)	20
AcsI	RAATTY	1 cut(s)	343
AfaI	GTAC	8 cut(s)	430, 448, 495, 508, 514, 523, 805, 814
AfeI	AGCGCT	1 cut(s)	945
AfiI	CCNNNNNNNGG	1 cut(s)	686
AgsI	TTSAA	4 cut(s)	85, 279, 528, 859
AhlI	ACTAGT	5 cut(s)	443, 449, 490, 509, 800
AloI	GAACNNNNNNTCC	1 cut(s)	28
AluBI	AGCT	2 cut(s)	44, 827
AluI	AGCT	2 cut(s)	44, 827
Alw26I	GTCTC	3 cut(s)	136, 215, 862
AlwI	GGATC	2 cut(s)	926, 960
Aor51HI	AGCGCT	1 cut(s)	945
AoxI	GGCC	2 cut(s)	20, 149
ApeKI	GCWGC	9 cut(s)	25, 41, 44, 63, 66, 236, 534, 540, 764
ApoI	RAATTY	1 cut(s)	343
Asp700I	GAANNNNTTC	1 cut(s)	924
AspLEI	GCGC	1 cut(s)	946
AsuHPI	GGTGA	2 cut(s)	292, 833
AsuII	TTCGAA	1 cut(s)	849
BaeI	ACNNNNGTAYC	2 cut(s)	291, 324
BbvI	GCAGC	9 cut(s)	31, 37, 53, 75, 78, 223, 546, 552, 751
BccI	CCATC	2 cut(s)	156, 835
BceAI	ACGGC	2 cut(s)	35, 831
BclI	TGATCA	2 cut(s)	457, 463
BcoDI	GTCTC	3 cut(s)	136, 215, 862
BcuI	ACTAGT	5 cut(s)	443, 449, 490, 509, 800
BfaI	CTAG	8 cut(s)	401, 432, 444, 450, 491, 510, 531, 801
BfmI	CTRYAG	1 cut(s)	45
BfoI	RGCGCY	1 cut(s)	947
BfuAI	ACCTGC	2 cut(s)	684, 809
BmcAI	AGTACT	5 cut(s)	430, 448, 508, 514, 805
BmiI	GGNNCC	2 cut(s)	214, 388
BmsI	GCATC	1 cut(s)	894
Bpu14I	TTCGAA	1 cut(s)	849
BsaAI	YACGTR	2 cut(s)	307, 497
BsaBI	GATNNNNATC	1 cut(s)	462
BsaI	GGTCTC	1 cut(s)	215
BsaJI	CCNNGG	2 cut(s)	225, 774
BsaWI	WCCGGW	1 cut(s)	610
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	1 cut(s)	686
Bse3DI	GCAATG	1 cut(s)	900
Bse8I	GATNNNNATC	1 cut(s)	462
BseDI	CCNNGG	2 cut(s)	225, 774
BseGI	GGATG	2 cut(s)	207, 909
BseJI	GATNNNNATC	1 cut(s)	462
BseLI	CCNNNNNNNGG	1 cut(s)	686
BseMI	GCAATG	1 cut(s)	900
BseRI	GAGGAG	8 cut(s)	245, 381, 384, 387, 390, 393, 396, 399
BseX3I	CGGCCG	1 cut(s)	20
BseXI	GCAGC	9 cut(s)	31, 37, 53, 75, 78, 223, 546, 552, 751
Bsh1236I	CGCG	2 cut(s)	227, 273
Bsh1285I	CGRYCG	1 cut(s)	23
BshFI	GGCC	2 cut(s)	22, 151
BsiEI	CGRYCG	1 cut(s)	23
BsiSI	CCGG	1 cut(s)	611
BslI	CCNNNNNNNGG	1 cut(s)	686
BsmAI	GTCTC	3 cut(s)	136, 215, 862
BsmI	GAATGC	2 cut(s)	51, 336
BsnI	GGCC	2 cut(s)	22, 151
Bso31I	GGTCTC	1 cut(s)	215
Bsp119I	TTCGAA	1 cut(s)	849
Bsp143I	GATC	5 cut(s)	174, 457, 463, 931, 952
BspANI	GGCC	2 cut(s)	22, 151
BspFNI	CGCG	2 cut(s)	227, 273
BspHI	TCATGA	3 cut(s)	460, 574, 928
BspLI	GGNNCC	2 cut(s)	214, 388
BspMAI	CTGCAG	1 cut(s)	49
BspMI	ACCTGC	2 cut(s)	684, 809
BspPI	GGATC	2 cut(s)	926, 960
BspT104I	TTCGAA	1 cut(s)	849
BspTNI	GGTCTC	1 cut(s)	215
BsrDI	GCAATG	1 cut(s)	900
BssECI	CCNNGG	2 cut(s)	225, 774
BssMI	GATC	5 cut(s)	174, 457, 463, 931, 952
Bst4CI	ACNGT	1 cut(s)	925
BstBAI	YACGTR	2 cut(s)	307, 497
BstBI	TTCGAA	1 cut(s)	849
BstC8I	GCNNGC	2 cut(s)	49, 262
BstDSI	CCRYGG	1 cut(s)	225
BstF5I	GGATG	2 cut(s)	207, 909
BstFNI	CGCG	2 cut(s)	227, 273
BstH2I	RGCGCY	1 cut(s)	947
BstHHI	GCGC	1 cut(s)	946
BstKTI	GATC	5 cut(s)	177, 460, 466, 934, 955
BstMAI	GTCTC	3 cut(s)	136, 215, 862
BstMBI	GATC	5 cut(s)	174, 457, 463, 931, 952
BstMCI	CGRYCG	1 cut(s)	23
BstMWI	GCNNNNNNNGC	6 cut(s)	233, 270, 540, 731, 764, 824
BstSFI	CTRYAG	1 cut(s)	45
BstSNI	TACGTA	1 cut(s)	497
BstUI	CGCG	2 cut(s)	227, 273
BstV1I	GCAGC	9 cut(s)	31, 37, 53, 75, 78, 223, 546, 552, 751
BstX2I	RGATCY	1 cut(s)	952
BstYI	RGATCY	1 cut(s)	952
BstZI	CGGCCG	1 cut(s)	20
BsuRI	GGCC	2 cut(s)	22, 151
BtgI	CCRYGG	1 cut(s)	225
BtsCI	GGATG	2 cut(s)	207, 909
BveI	ACCTGC	2 cut(s)	684, 809
Cac8I	GCNNGC	2 cut(s)	49, 262
CciI	TCATGA	3 cut(s)	460, 574, 928
CfoI	GCGC	1 cut(s)	946
Cfr42I	CCGCGG	1 cut(s)	228
Csp6I	GTAC	8 cut(s)	429, 447, 494, 507, 513, 522, 804, 813
CviAII	CATG	4 cut(s)	461, 575, 684, 929
CviQI	GTAC	8 cut(s)	429, 447, 494, 507, 513, 522, 804, 813
DpnI	GATC	5 cut(s)	176, 459, 465, 933, 954
DpnII	GATC	5 cut(s)	174, 457, 463, 931, 952
EaeI	YGGCCR	1 cut(s)	20
EagI	CGGCCG	1 cut(s)	20
EciI	GGCGGA	2 cut(s)	794, 948
EclXI	CGGCCG	1 cut(s)	20
Eco105I	TACGTA	1 cut(s)	497
Eco147I	AGGCCT	1 cut(s)	151
Eco31I	GGTCTC	1 cut(s)	215
Eco32I	GATATC	1 cut(s)	876
Eco47III	AGCGCT	1 cut(s)	945
Eco52I	CGGCCG	1 cut(s)	20
EcoRV	GATATC	1 cut(s)	876
FaeI	CATG	4 cut(s)	464, 578, 687, 932
FaiI	YATR	9 cut(s)	249, 462, 576, 685, 694, 891, 915, 917, 930
FatI	CATG	4 cut(s)	460, 574, 683, 928
FbaI	TGATCA	2 cut(s)	457, 463
FblI	GTMKAC	1 cut(s)	603
FokI	GGATG	2 cut(s)	214, 916
FspBI	CTAG	8 cut(s)	401, 432, 444, 450, 491, 510, 531, 801
GlaI	GCGC	1 cut(s)	945
HaeII	RGCGCY	1 cut(s)	947
HaeIII	GGCC	2 cut(s)	22, 151
HapII	CCGG	1 cut(s)	611
HhaI	GCGC	1 cut(s)	946
Hin1II	CATG	4 cut(s)	464, 578, 687, 932
Hin6I	GCGC	1 cut(s)	944
HinP1I	GCGC	1 cut(s)	944
HincII	GTYRAC	1 cut(s)	709
HindII	GTYRAC	1 cut(s)	709
HinfI	GANTC	2 cut(s)	317, 830
HpaII	CCGG	1 cut(s)	611
HphI	GGTGA	2 cut(s)	292, 833
Hpy166II	GTNNAC	2 cut(s)	604, 709
Hpy188I	TCNGA	4 cut(s)	212, 342, 457, 747
Hpy188III	TCNNGA	3 cut(s)	461, 575, 929
Hpy8I	GTNNAC	2 cut(s)	604, 709
HpyAV	CCTTC	4 cut(s)	79, 162, 275, 690
HpyCH4III	ACNGT	1 cut(s)	925
HpyCH4IV	ACGT	2 cut(s)	306, 496
HpyCH4V	TGCA	5 cut(s)	41, 47, 627, 893, 907
HpyF10VI	GCNNNNNNNGC	6 cut(s)	233, 270, 540, 731, 764, 824
HpySE526I	ACGT	2 cut(s)	306, 496
Hsp92II	CATG	4 cut(s)	464, 578, 687, 932
HspAI	GCGC	1 cut(s)	944
Ksp22I	TGATCA	2 cut(s)	457, 463
KspI	CCGCGG	1 cut(s)	228
Kzo9I	GATC	5 cut(s)	174, 457, 463, 931, 952
LmnI	GCTCC	1 cut(s)	386
LpnPI	CCDG	7 cut(s)	33, 274, 624, 689, 740, 804, 934
Lsp1109I	GCAGC	9 cut(s)	31, 37, 53, 75, 78, 223, 546, 552, 751
LweI	GCATC	1 cut(s)	894
MaeI	CTAG	8 cut(s)	401, 432, 444, 450, 491, 510, 531, 801
MaeII	ACGT	2 cut(s)	306, 496
MalI	GATC	5 cut(s)	176, 459, 465, 933, 954
MboI	GATC	5 cut(s)	174, 457, 463, 931, 952
MboII	GAAGA	4 cut(s)	102, 260, 642, 947
MflI	RGATCY	1 cut(s)	952
MluCI	AATT	2 cut(s)	343, 580
MlyI	GAGTC	1 cut(s)	311
MmeI	TCCRAC	2 cut(s)	40, 696
MroXI	GAANNNNTTC	1 cut(s)	924
MspA1I	CMGCKG	4 cut(s)	44, 227, 537, 964
MspI	CCGG	1 cut(s)	611
Mva1269I	GAATGC	2 cut(s)	51, 336
MvnI	CGCG	2 cut(s)	227, 273
MwoI	GCNNNNNNNGC	6 cut(s)	233, 270, 540, 731, 764, 824
NdeII	GATC	5 cut(s)	174, 457, 463, 931, 952
NlaIII	CATG	4 cut(s)	464, 578, 687, 932
NlaIV	GGNNCC	2 cut(s)	214, 388
NmeAIII	GCCGAG	2 cut(s)	196, 755
NspV	TTCGAA	1 cut(s)	849
PagI	TCATGA	3 cut(s)	460, 574, 928
PaqCI	CACCTGC	1 cut(s)	809
PceI	AGGCCT	1 cut(s)	151
PctI	GAATGC	2 cut(s)	51, 336
PdmI	GAANNNNTTC	1 cut(s)	924
PfeI	GAWTC	1 cut(s)	830
PflFI	GACNNNGTC	1 cut(s)	599
PleI	GAGTC	1 cut(s)	311
PpsI	GAGTC	1 cut(s)	311
Ppu21I	YACGTR	2 cut(s)	307, 497
PspN4I	GGNNCC	2 cut(s)	214, 388
PstI	CTGCAG	1 cut(s)	49
PsuI	RGATCY	1 cut(s)	952
PsyI	GACNNNGTC	1 cut(s)	599
PvuII	CAGCTG	1 cut(s)	44
RsaI	GTAC	8 cut(s)	430, 448, 495, 508, 514, 523, 805, 814
RsaNI	GTAC	8 cut(s)	429, 447, 494, 507, 513, 522, 804, 813
SacII	CCGCGG	1 cut(s)	228
Sau3AI	GATC	5 cut(s)	174, 457, 463, 931, 952
ScaI	AGTACT	5 cut(s)	430, 448, 508, 514, 805
SchI	GAGTC	1 cut(s)	311
SetI	ASST	9 cut(s)	46, 218, 309, 499, 570, 678, 823, 829, 857
SfaNI	GCATC	1 cut(s)	894
SfcI	CTRYAG	1 cut(s)	45
Sfr303I	CCGCGG	1 cut(s)	228
SfuI	TTCGAA	1 cut(s)	849
SgrBI	CCGCGG	1 cut(s)	228
SnaBI	TACGTA	1 cut(s)	497
SpeI	ACTAGT	5 cut(s)	443, 449, 490, 509, 800
Sse9I	AATT	2 cut(s)	343, 580
SseBI	AGGCCT	1 cut(s)	151
SspMI	CTAG	8 cut(s)	401, 432, 444, 450, 491, 510, 531, 801
StuI	AGGCCT	1 cut(s)	151
TaaI	ACNGT	1 cut(s)	925
TaiI	ACGT	2 cut(s)	309, 499
TaqI	TCGA	3 cut(s)	286, 560, 849
TasI	AATT	2 cut(s)	343, 580
TatI	WGTACW	6 cut(s)	428, 446, 506, 512, 521, 803
TauI	GCSGC	7 cut(s)	25, 260, 475, 540, 761, 764, 964
TfiI	GAWTC	1 cut(s)	830
TseI	GCWGC	9 cut(s)	25, 41, 44, 63, 66, 236, 534, 540, 764
TspDTI	ATGAA	6 cut(s)	267, 286, 563, 672, 911, 917
TspGWI	ACGGA	1 cut(s)	468
Tth111I	GACNNNGTC	1 cut(s)	599
XapI	RAATTY	1 cut(s)	343
XmiI	GTMKAC	1 cut(s)	603
XmnI	GAANNNNTTC	1 cut(s)	924
XspI	CTAG	8 cut(s)	401, 432, 444, 450, 491, 510, 531, 801
ZrmI	AGTACT	5 cut(s)	430, 448, 508, 514, 805

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.