Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0005037

Physical Location & Seq

Genomic Coordinates Forward (+)

1911231 .. 1912127

Gene Structure 897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G002140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGAGTTTCAGTTCCAGCTGCAGAAACAGATTTCATTTCCGGCGGCGGCTCAATCACATAGAGCTTCAGGCATTCCAAAAAGCAGCAAAGGAAATAAGTTGAAGGGAGGTAGAAATAGAAGCAACAACACCAACAAGTTTGTTGGGGTGAGACAGAGACCTTCAGGGAGATGGGTAGCTGAGATCAAAGACACAACGCAAAAGATAAGGATGTGGCTTGGAACCTTTGAAACTGCTGAAGAGGCTGCTCGAGCTTATGACGAAGCTGCTTGCCTTCTTCGTGGCAACAATACTCGAACCAACTTCATCACACATGTCTCTTTGGATTCCCCTCTTGCATCTCGAATCCAAAATCTCCTCAACACCAAAAAGCCAGGATCCAATTGTGAACAACAAATCCAAATGACTAGCAGTACTTCTTCTAGTACTGCCTCTCATCCCCCCACAGCTAAAAGTACTAGTAGCACAAGTACTAGCGCTAGTTCCACTAGCAAGAGTTGTCTTTCGAGTGAGGTATCGAATCAAGAGCCGTCTCATCATCAATTTTCTGATGATGTATACAAACCAGACTTGAGTAACTGCAATCAGCTCCCTTTTGATCAGTTGAGTACTAGCACTACTACAAATTCTTATCAACCCAATATTTCTTGGGTTGATGGATTCTCATTTGCTCAGCAAATGTTTGCGACACCAAAAGATGAAGCTGCTTTGTCGAGCGAATTAACTTCCGCTGATGAACGTGGTGATTCGGATGAGTTGTTGGAATTCGAAAGGATGAAAGTCGAAAGACAGATATCAGCTTCTTTGTATGCTATGAATGGTGTGCAAGAGTATATGGACACAGTTCATGATGCGAATGAAGCTCTTTGGGATCTTCAACCATTCTGTGCTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009791 GO:0009877 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0035864 GO:0035865 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048518 GO:0048522 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0080090 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

298

Amino Acids

32.93

Weight (kDa)

5.9

Isoelectric Point (pI)

42.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	46 - 95	1.9e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19790
fragaria_vesca	FvH4_6g02490
malus_domestica	MD03G1004500.v1.1 MD11G1005200.v1.1 MD12G1004600.v1.1 MD14G1003100.v1.1
prunus_persica	Prupe.6G004400_v2.0.a1 Prupe.7G004900_v2.0.a1
pyrus_communis	pycom03g00470 pycom11g00430 pycom14g00100
rosa_chinensis	RchiOBHm_Chr3g0450351 RchiOBHm_Chr5g0083271
rosa_laevigata	RLG00000025736 RLG00000037025
rosa_multiflora	Rmu_sc0000330.1_g000004 Rmu_sc0011792.1_g000007
rosa_roxburghii	Rroxscaffold_1G00001220 Rroxscaffold_6G00428080
rosa_rugosa	Rorug02G0627100.1 Rorug05G0483900
rosa_samantha	Rh3AG027500 Rh3BG028200 Rh3CG026900 Rh3DG028100 Rh5BG560600 Rh5CG583300 Rh5DG569900
rosa_wichuraiana	Rw3G002140 Rw5G049960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	558
AciI	CCGC	3 cut(s)	44, 47, 729
AclWI	GGATC	3 cut(s)	372, 385, 879
AcsI	RAATTY	2 cut(s)	625, 764
AcuI	CTGAAG	3 cut(s)	51, 147, 258
AfaI	GTAC	5 cut(s)	415, 427, 457, 472, 610
AfeI	AGCGCT	1 cut(s)	478
AflIII	ACRYGT	1 cut(s)	313
AgsI	TTSAA	3 cut(s)	103, 230, 878
AhlI	ACTAGT	1 cut(s)	458
AjnI	CCWGG	1 cut(s)	373
AloI	GAACNNNNNNTCC	3 cut(s)	28, 381, 413
Alw26I	GTCTC	4 cut(s)	145, 151, 322, 537
AlwI	GGATC	3 cut(s)	372, 385, 879
Ama87I	CYCGRG	1 cut(s)	249
Aor51HI	AGCGCT	1 cut(s)	478
ApeKI	GCWGC	5 cut(s)	19, 84, 245, 266, 704
ApoI	RAATTY	2 cut(s)	625, 764
AspLEI	GCGC	1 cut(s)	479
AsuHPI	GGTGA	2 cut(s)	160, 755
AsuII	TTCGAA	1 cut(s)	768
AvaI	CYCGRG	1 cut(s)	249
BamHI	GGATCC	1 cut(s)	377
BbvI	GCAGC	5 cut(s)	6, 96, 232, 253, 691
BccI	CCATC	2 cut(s)	165, 650
BceAI	ACGGC	1 cut(s)	514
BciT130I	CCWGG	1 cut(s)	375
BclI	TGATCA	1 cut(s)	598
BcoDI	GTCTC	4 cut(s)	145, 151, 322, 537
BcuI	ACTAGT	1 cut(s)	458
BfaI	CTAG	7 cut(s)	408, 423, 459, 474, 480, 489, 612
BfmI	CTRYAG	1 cut(s)	20
BfoI	RGCGCY	1 cut(s)	480
BisI	GCNGC	7 cut(s)	20, 45, 48, 85, 246, 267, 705
BlpI	GCTNAGC	1 cut(s)	672
BlsI	GCNGC	7 cut(s)	21, 46, 49, 86, 247, 268, 706
BmcAI	AGTACT	5 cut(s)	415, 427, 457, 472, 610
Bme1390I	CCNGG	1 cut(s)	375
BmeT110I	CYCGRG	1 cut(s)	249
BmiI	GGNNCC	2 cut(s)	223, 379
BmrFI	CCNGG	1 cut(s)	375
BmsI	GCATC	2 cut(s)	347, 841
Bpu1102I	GCTNAGC	1 cut(s)	672
Bpu14I	TTCGAA	1 cut(s)	768
BpuEI	CTTGAG	1 cut(s)	592
BsaI	GGTCTC	1 cut(s)	151
BsaXI	ACNNNNNCTCC	1 cut(s)	26
BseBI	CCWGG	1 cut(s)	375
BseGI	GGATG	4 cut(s)	216, 436, 757, 780
BseMII	CTCAG	2 cut(s)	171, 686
BseRI	GAGGAG	1 cut(s)	347
BseXI	GCAGC	5 cut(s)	6, 96, 232, 253, 691
BsiHKCI	CYCGRG	1 cut(s)	249
BsiSI	CCGG	1 cut(s)	41
BsmAI	GTCTC	4 cut(s)	145, 151, 322, 537
BsmBI	CGTCTC	1 cut(s)	537
BsmI	GAATGC	1 cut(s)	72
Bso31I	GGTCTC	1 cut(s)	151
BsoBI	CYCGRG	1 cut(s)	249
Bsp119I	TTCGAA	1 cut(s)	768
Bsp143I	GATC	4 cut(s)	183, 377, 598, 871
Bsp1720I	GCTNAGC	1 cut(s)	672
BspACI	CCGC	3 cut(s)	44, 47, 729
BspCNI	CTCAG	2 cut(s)	172, 685
BspHI	TCATGA	1 cut(s)	847
BspLI	GGNNCC	2 cut(s)	223, 379
BspMAI	CTGCAG	1 cut(s)	24
BspPI	GGATC	3 cut(s)	372, 385, 879
BspT104I	TTCGAA	1 cut(s)	768
BspTNI	GGTCTC	1 cut(s)	151
BssMI	GATC	4 cut(s)	183, 377, 598, 871
BssNAI	GTATAC	1 cut(s)	559
Bst1107I	GTATAC	1 cut(s)	559
Bst2UI	CCWGG	1 cut(s)	375
Bst4CI	ACNGT	1 cut(s)	844
Bst6I	CTCTTC	1 cut(s)	234
BstBI	TTCGAA	1 cut(s)	768
BstC8I	GCNNGC	1 cut(s)	271
BstDEI	CTNAG	2 cut(s)	180, 672
BstF5I	GGATG	4 cut(s)	216, 436, 757, 780
BstH2I	RGCGCY	1 cut(s)	480
BstHHI	GCGC	1 cut(s)	479
BstKTI	GATC	4 cut(s)	186, 380, 601, 874
BstMAI	GTCTC	4 cut(s)	145, 151, 322, 537
BstMBI	GATC	4 cut(s)	183, 377, 598, 871
BstMWI	GCNNNNNNNGC	3 cut(s)	242, 251, 860
BstNI	CCWGG	1 cut(s)	375
BstNSI	RCATGY	1 cut(s)	317
BstSCI	CCNGG	1 cut(s)	373
BstSFI	CTRYAG	1 cut(s)	20
BstV1I	GCAGC	5 cut(s)	6, 96, 232, 253, 691
BstX2I	RGATCY	2 cut(s)	377, 871
BstYI	RGATCY	2 cut(s)	377, 871
BstZ17I	GTATAC	1 cut(s)	559
BtsCI	GGATG	4 cut(s)	216, 436, 757, 780
Cac8I	GCNNGC	1 cut(s)	271
CciI	TCATGA	1 cut(s)	847
CfoI	GCGC	1 cut(s)	479
Csp6I	GTAC	5 cut(s)	414, 426, 456, 471, 609
CviAII	CATG	2 cut(s)	314, 848
CviQI	GTAC	5 cut(s)	414, 426, 456, 471, 609
DdeI	CTNAG	2 cut(s)	180, 672
DpnI	GATC	4 cut(s)	185, 379, 600, 873
DpnII	GATC	4 cut(s)	183, 377, 598, 871
Eam1104I	CTCTTC	1 cut(s)	234
EarI	CTCTTC	1 cut(s)	234
Eco31I	GGTCTC	1 cut(s)	151
Eco32I	GATATC	1 cut(s)	795
Eco47III	AGCGCT	1 cut(s)	478
Eco57I	CTGAAG	3 cut(s)	51, 147, 258
Eco88I	CYCGRG	1 cut(s)	249
EcoRI	GAATTC	1 cut(s)	764
EcoRII	CCWGG	1 cut(s)	373
EcoRV	GATATC	1 cut(s)	795
Esp3I	CGTCTC	1 cut(s)	537
FaeI	CATG	2 cut(s)	317, 851
FaiI	YATR	9 cut(s)	60, 258, 315, 559, 810, 815, 834, 836, 849
FatI	CATG	2 cut(s)	313, 847
FbaI	TGATCA	1 cut(s)	598
FblI	GTMKAC	1 cut(s)	558
Fnu4HI	GCNGC	7 cut(s)	20, 45, 48, 85, 246, 267, 705
FokI	GGATG	4 cut(s)	223, 423, 764, 787
Fsp4HI	GCNGC	7 cut(s)	20, 45, 48, 85, 246, 267, 705
FspBI	CTAG	7 cut(s)	408, 423, 459, 474, 480, 489, 612
GlaI	GCGC	1 cut(s)	478
GluI	GCNGC	7 cut(s)	20, 45, 48, 85, 246, 267, 705
HaeII	RGCGCY	1 cut(s)	480
HapII	CCGG	1 cut(s)	41
HhaI	GCGC	1 cut(s)	479
Hin1II	CATG	2 cut(s)	317, 851
Hin6I	GCGC	1 cut(s)	477
HinP1I	GCGC	1 cut(s)	477
HinfI	GANTC	5 cut(s)	326, 345, 520, 660, 746
HpaII	CCGG	1 cut(s)	41
HphI	GGTGA	2 cut(s)	160, 755
Hpy166II	GTNNAC	2 cut(s)	389, 559
Hpy188I	TCNGA	2 cut(s)	550, 751
Hpy188III	TCNNGA	3 cut(s)	342, 524, 848
Hpy8I	GTNNAC	2 cut(s)	389, 559
HpyAV	CCTTC	3 cut(s)	97, 171, 284
HpyCH4III	ACNGT	1 cut(s)	844
HpyCH4IV	ACGT	1 cut(s)	739
HpyCH4V	TGCA	4 cut(s)	22, 338, 582, 826
HpyF10VI	GCNNNNNNNGC	3 cut(s)	242, 251, 860
HpyF3I	CTNAG	2 cut(s)	180, 672
HpySE526I	ACGT	1 cut(s)	739
Hsp92II	CATG	2 cut(s)	317, 851
HspAI	GCGC	1 cut(s)	477
Ksp22I	TGATCA	1 cut(s)	598
Kzo9I	GATC	4 cut(s)	183, 377, 598, 871
LmnI	GCTCC	1 cut(s)	594
LpnPI	CCDG	7 cut(s)	29, 54, 54, 150, 360, 387, 579
Lsp1109I	GCAGC	5 cut(s)	6, 96, 232, 253, 691
LweI	GCATC	2 cut(s)	347, 841
MaeI	CTAG	7 cut(s)	408, 423, 459, 474, 480, 489, 612
MaeII	ACGT	1 cut(s)	739
MaeIII	GTNAC	1 cut(s)	575
MalI	GATC	4 cut(s)	185, 379, 600, 873
MboI	GATC	4 cut(s)	183, 377, 598, 871
MboII	GAAGA	4 cut(s)	251, 269, 411, 866
MfeI	CAATTG	1 cut(s)	382
MflI	RGATCY	2 cut(s)	377, 871
MluCI	AATT	5 cut(s)	382, 542, 625, 719, 764
MmeI	TCCRAC	1 cut(s)	741
MnlI	CCTC	6 cut(s)	101, 235, 342, 368, 442, 505
MseI	TTAA	1 cut(s)	722
MspA1I	CMGCKG	2 cut(s)	19, 731
MspI	CCGG	1 cut(s)	41
MspR9I	CCNGG	1 cut(s)	375
MunI	CAATTG	1 cut(s)	382
Mva1269I	GAATGC	1 cut(s)	72
MvaI	CCWGG	1 cut(s)	375
MwoI	GCNNNNNNNGC	3 cut(s)	242, 251, 860
NdeII	GATC	4 cut(s)	183, 377, 598, 871
NlaIII	CATG	2 cut(s)	317, 851
NlaIV	GGNNCC	2 cut(s)	223, 379
NspI	RCATGY	1 cut(s)	317
NspV	TTCGAA	1 cut(s)	768
PaeR7I	CTCGAG	1 cut(s)	249
PagI	TCATGA	1 cut(s)	847
PciI	ACATGT	1 cut(s)	313
PctI	GAATGC	1 cut(s)	72
PfeI	GAWTC	5 cut(s)	326, 345, 520, 660, 746
PkrI	GCNGC	7 cut(s)	21, 46, 49, 86, 247, 268, 706
PscI	ACATGT	1 cut(s)	313
Psp6I	CCWGG	1 cut(s)	373
PspGI	CCWGG	1 cut(s)	373
PspN4I	GGNNCC	2 cut(s)	223, 379
PspXI	VCTCGAGB	1 cut(s)	249
PstI	CTGCAG	1 cut(s)	24
PsuI	RGATCY	2 cut(s)	377, 871
PvuII	CAGCTG	1 cut(s)	19
RsaI	GTAC	5 cut(s)	415, 427, 457, 472, 610
RsaNI	GTAC	5 cut(s)	414, 426, 456, 471, 609
SaqAI	TTAA	1 cut(s)	722
SatI	GCNGC	7 cut(s)	20, 45, 48, 85, 246, 267, 705
Sau3AI	GATC	4 cut(s)	183, 377, 598, 871
ScaI	AGTACT	5 cut(s)	415, 427, 457, 472, 610
ScrFI	CCNGG	1 cut(s)	375
SfaNI	GCATC	2 cut(s)	347, 841
SfcI	CTRYAG	1 cut(s)	20
Sfr274I	CTCGAG	1 cut(s)	249
SfuI	TTCGAA	1 cut(s)	768
SlaI	CTCGAG	1 cut(s)	249
SmlI	CTYRAG	2 cut(s)	249, 571
SmoI	CTYRAG	2 cut(s)	249, 571
SpeI	ACTAGT	1 cut(s)	458
Sse9I	AATT	5 cut(s)	382, 542, 625, 719, 764
SsiI	CCGC	3 cut(s)	44, 47, 729
SspI	AATATT	1 cut(s)	643
SspMI	CTAG	7 cut(s)	408, 423, 459, 474, 480, 489, 612
StyD4I	CCNGG	1 cut(s)	373
TaaI	ACNGT	1 cut(s)	844
TaiI	ACGT	1 cut(s)	742
TaqI	TCGA	8 cut(s)	250, 295, 343, 506, 518, 713, 768, 783
TasI	AATT	5 cut(s)	382, 542, 625, 719, 764
TatI	WGTACW	5 cut(s)	413, 425, 455, 470, 608
TauI	GCSGC	2 cut(s)	47, 50
TfiI	GAWTC	5 cut(s)	326, 345, 520, 660, 746
Tru1I	TTAA	1 cut(s)	722
Tru9I	TTAA	1 cut(s)	722
TseI	GCWGC	5 cut(s)	19, 84, 245, 266, 704
TspDTI	ATGAA	8 cut(s)	24, 295, 714, 750, 791, 830, 836, 873
XapI	RAATTY	2 cut(s)	625, 764
XceI	RCATGY	1 cut(s)	317
XhoI	CTCGAG	1 cut(s)	249
XmiI	GTMKAC	1 cut(s)	558
XspI	CTAG	7 cut(s)	408, 423, 459, 474, 480, 489, 612
ZrmI	AGTACT	5 cut(s)	415, 427, 457, 472, 610

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.