Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0005037

Physical Location & Seq

Genomic Coordinates Forward (+)

606962 .. 607888

Gene Structure 927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1004600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGAGTTTCAGTTCCAACAGCCGAAGCAAGTTTCCTTTGCAGCTGCAGGCATTCCGAAAAGCAGCAGCAAAGTAGGGAAGTTGAAGGGAAGAAATAATAATAGTAGAAGCAACAACAACGCAAACAAGTTTGTTGGTGTGAGGCAGAGGCCTTCGGGGAGATGGGTTGCTGAGATCAAAGACACTACTCAAAAAATAAGGATGTGGCTCGGAACCTTTGAGACTGCGGAGGAGGCTGCCCGCGCTTATGATGAAGCCGCCTGCCTTCTTCGCGGCTCAAACACTCGAACCAACTTCATCACCCAAGTGTCTATGGACTCCCCTCTTGCTTCTCGCATTCGAAATTTACTCAACACGAAAAAAGGAGGAGGAGGAGCCACTAAGCAACAACTAGCCCAACTACAACGTAGTATTAGTTCTGATCATGATCATTTGCCACCACCGTCTGAACAACTAGTACGGAAAAGTACTAGTAGTACTTCAACTAGCAGCAGCAGTGACACCACTTCCCTTTCGAGTGAGGTATTTCAAGATAATTCTCTGCTGTTTGACGATGTCTACAAACCGGATTTGAGAAACTGCAACGAAGAGTTTGAGTTGAGTTCTTCCTTCAATAATTCTCAATCCAACCTTCTTTCATGGGGGTCATATCAAACGGGGGTTGACCACTTCTCGTTTGCTCAACAAGCGTTCGAGTTTCCGAAACATGAGGCGGCCGCTGCTTTGTCATCAGCGGAGAGTACTACTACAACTAGTACGGCAGGTGAAGCTGACTCAGAGTTGATGGATTTCGAAAGGATGAAAGTGGAGAGACAGATATCGGCTTCGCTCTATGCAATGAATGGGGTGCAAGAGTATATGGAAACAGTTCATGATCCAAGCGAAGCGCTTTGGGATCTTCCGCCGTTGTGTTCTTTGTTCTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009791 GO:0009877 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0035864 GO:0035865 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048518 GO:0048522 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0080090 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

309

Amino Acids

34.03

Weight (kDa)

5.65

Isoelectric Point (pI)

47.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	43 - 92	2.1e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19790
fragaria_vesca	FvH4_6g02490
malus_domestica	MD03G1004500.v1.1 MD11G1005200.v1.1 MD12G1004600.v1.1 MD14G1003100.v1.1
prunus_persica	Prupe.6G004400_v2.0.a1 Prupe.7G004900_v2.0.a1
pyrus_communis	pycom03g00470 pycom11g00430 pycom14g00100
rosa_chinensis	RchiOBHm_Chr3g0450351 RchiOBHm_Chr5g0083271
rosa_laevigata	RLG00000025736 RLG00000037025
rosa_multiflora	Rmu_sc0000330.1_g000004 Rmu_sc0011792.1_g000007
rosa_roxburghii	Rroxscaffold_1G00001220 Rroxscaffold_6G00428080
rosa_rugosa	Rorug02G0627100.1 Rorug05G0483900
rosa_samantha	Rh3AG027500 Rh3BG028200 Rh3CG026900 Rh3DG028100 Rh5BG560600 Rh5CG583300 Rh5DG569900
rosa_wichuraiana	Rw3G002140 Rw5G049960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	752
Acc36I	ACCTGC	1 cut(s)	752
AccI	GTMKAC	1 cut(s)	558
AccII	CGCG	2 cut(s)	243, 273
AciI	CCGC	8 cut(s)	227, 241, 258, 273, 713, 717, 734, 902
AclWI	GGATC	2 cut(s)	869, 903
AcoI	YGGCCR	1 cut(s)	714
AcsI	RAATTY	1 cut(s)	343
AfaI	GTAC	5 cut(s)	459, 469, 478, 742, 757
AfeI	AGCGCT	1 cut(s)	888
AgsI	TTSAA	4 cut(s)	85, 483, 530, 613
AhlI	ACTAGT	3 cut(s)	454, 470, 752
AleI	CACNNNNGTG	1 cut(s)	305
AloI	GAACNNNNNNTCC	1 cut(s)	28
AluBI	AGCT	2 cut(s)	44, 770
AluI	AGCT	2 cut(s)	44, 770
Alw26I	GTCTC	2 cut(s)	215, 805
AlwI	GGATC	2 cut(s)	869, 903
Aor51HI	AGCGCT	1 cut(s)	888
AoxI	GGCC	2 cut(s)	149, 714
ApeKI	GCWGC	8 cut(s)	41, 44, 63, 66, 236, 489, 492, 719
ApoI	RAATTY	1 cut(s)	343
Asp700I	GAANNNNTTC	1 cut(s)	867
AspLEI	GCGC	2 cut(s)	245, 889
AsuHPI	GGTGA	2 cut(s)	292, 776
AsuII	TTCGAA	2 cut(s)	340, 792
BbvI	GCAGC	8 cut(s)	31, 53, 75, 78, 223, 501, 504, 706
BccI	CCATC	2 cut(s)	156, 778
BceAI	ACGGC	2 cut(s)	774, 889
BclI	TGATCA	2 cut(s)	421, 427
BcoDI	GTCTC	2 cut(s)	215, 805
BcuI	ACTAGT	3 cut(s)	454, 470, 752
BfaI	CTAG	6 cut(s)	392, 455, 471, 486, 753, 925
BfmI	CTRYAG	1 cut(s)	45
BfoI	RGCGCY	1 cut(s)	890
BfuAI	ACCTGC	1 cut(s)	752
BmcAI	AGTACT	3 cut(s)	469, 478, 742
BmiI	GGNNCC	2 cut(s)	214, 376
Bpu14I	TTCGAA	2 cut(s)	340, 792
BsaBI	GATNNNNATC	1 cut(s)	426
BsaWI	WCCGGW	1 cut(s)	565
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bse3DI	GCAATG	1 cut(s)	843
Bse8I	GATNNNNATC	1 cut(s)	426
BseGI	GGATG	2 cut(s)	207, 804
BseJI	GATNNNNATC	1 cut(s)	426
BseMI	GCAATG	1 cut(s)	843
BseMII	CTCAG	2 cut(s)	162, 789
BseRI	GAGGAG	4 cut(s)	245, 381, 384, 387
BseX3I	CGGCCG	1 cut(s)	714
BseXI	GCAGC	8 cut(s)	31, 53, 75, 78, 223, 501, 504, 706
Bsh1236I	CGCG	2 cut(s)	243, 273
Bsh1285I	CGRYCG	1 cut(s)	717
BshFI	GGCC	2 cut(s)	151, 716
BsiEI	CGRYCG	1 cut(s)	717
BsiSI	CCGG	1 cut(s)	566
BsmAI	GTCTC	2 cut(s)	215, 805
BsmI	GAATGC	2 cut(s)	51, 336
BsnI	GGCC	2 cut(s)	151, 716
Bsp119I	TTCGAA	2 cut(s)	340, 792
Bsp143I	GATC	5 cut(s)	174, 421, 427, 874, 895
BspACI	CCGC	8 cut(s)	227, 241, 258, 273, 713, 717, 734, 902
BspANI	GGCC	2 cut(s)	151, 716
BspCNI	CTCAG	2 cut(s)	163, 788
BspFNI	CGCG	2 cut(s)	243, 273
BspHI	TCATGA	2 cut(s)	424, 871
BspLI	GGNNCC	2 cut(s)	214, 376
BspMAI	CTGCAG	1 cut(s)	49
BspMI	ACCTGC	1 cut(s)	752
BspPI	GGATC	2 cut(s)	869, 903
BspT104I	TTCGAA	2 cut(s)	340, 792
BsrDI	GCAATG	1 cut(s)	843
BssMI	GATC	5 cut(s)	174, 421, 427, 874, 895
Bst4CI	ACNGT	2 cut(s)	444, 868
Bst6I	CTCTTC	1 cut(s)	582
BstBI	TTCGAA	2 cut(s)	340, 792
BstC8I	GCNNGC	3 cut(s)	49, 241, 262
BstDEI	CTNAG	3 cut(s)	171, 381, 775
BstF5I	GGATG	2 cut(s)	207, 804
BstFNI	CGCG	2 cut(s)	243, 273
BstH2I	RGCGCY	1 cut(s)	890
BstHHI	GCGC	2 cut(s)	245, 889
BstKTI	GATC	5 cut(s)	177, 424, 430, 877, 898
BstMAI	GTCTC	2 cut(s)	215, 805
BstMBI	GATC	5 cut(s)	174, 421, 427, 874, 895
BstMCI	CGRYCG	1 cut(s)	717
BstMWI	GCNNNNNNNGC	6 cut(s)	233, 242, 270, 686, 719, 767
BstSFI	CTRYAG	1 cut(s)	45
BstUI	CGCG	2 cut(s)	243, 273
BstV1I	GCAGC	8 cut(s)	31, 53, 75, 78, 223, 501, 504, 706
BstX2I	RGATCY	1 cut(s)	895
BstYI	RGATCY	1 cut(s)	895
BstZI	CGGCCG	1 cut(s)	714
BsuRI	GGCC	2 cut(s)	151, 716
BtsCI	GGATG	2 cut(s)	207, 804
BtsI	GCAGTG	1 cut(s)	502
BtsIMutI	CAGTG	1 cut(s)	502
BveI	ACCTGC	1 cut(s)	752
Cac8I	GCNNGC	3 cut(s)	49, 241, 262
CciI	TCATGA	2 cut(s)	424, 871
CciNI	GCGGCCGC	1 cut(s)	714
CfoI	GCGC	2 cut(s)	245, 889
Csp6I	GTAC	5 cut(s)	458, 468, 477, 741, 756
CviAII	CATG	4 cut(s)	425, 639, 707, 872
CviQI	GTAC	5 cut(s)	458, 468, 477, 741, 756
DdeI	CTNAG	3 cut(s)	171, 381, 775
DpnI	GATC	5 cut(s)	176, 423, 429, 876, 897
DpnII	GATC	5 cut(s)	174, 421, 427, 874, 895
EaeI	YGGCCR	1 cut(s)	714
EagI	CGGCCG	1 cut(s)	714
Eam1104I	CTCTTC	1 cut(s)	582
EarI	CTCTTC	1 cut(s)	582
EciI	GGCGGA	1 cut(s)	891
EclXI	CGGCCG	1 cut(s)	714
Eco147I	AGGCCT	1 cut(s)	151
Eco32I	GATATC	1 cut(s)	819
Eco47III	AGCGCT	1 cut(s)	888
Eco52I	CGGCCG	1 cut(s)	714
EcoRV	GATATC	1 cut(s)	819
FaeI	CATG	4 cut(s)	428, 642, 710, 875
FatI	CATG	4 cut(s)	424, 638, 706, 871
FauI	CCCGC	1 cut(s)	248
FbaI	TGATCA	2 cut(s)	421, 427
FblI	GTMKAC	1 cut(s)	558
FokI	GGATG	2 cut(s)	214, 811
FspBI	CTAG	6 cut(s)	392, 455, 471, 486, 753, 925
GlaI	GCGC	2 cut(s)	244, 888
HaeII	RGCGCY	1 cut(s)	890
HaeIII	GGCC	2 cut(s)	151, 716
HapII	CCGG	1 cut(s)	566
HhaI	GCGC	2 cut(s)	245, 889
Hin1II	CATG	4 cut(s)	428, 642, 710, 875
Hin6I	GCGC	2 cut(s)	243, 887
HinP1I	GCGC	2 cut(s)	243, 887
HincII	GTYRAC	1 cut(s)	664
HindII	GTYRAC	1 cut(s)	664
HinfI	GANTC	2 cut(s)	317, 773
HpaII	CCGG	1 cut(s)	566
HphI	GGTGA	2 cut(s)	292, 776
Hpy166II	GTNNAC	2 cut(s)	559, 664
Hpy188I	TCNGA	6 cut(s)	57, 212, 421, 448, 702, 778
Hpy188III	TCNNGA	3 cut(s)	425, 530, 872
Hpy8I	GTNNAC	2 cut(s)	559, 664
HpyAV	CCTTC	5 cut(s)	79, 162, 275, 619, 641
HpyCH4III	ACNGT	2 cut(s)	444, 868
HpyCH4IV	ACGT	1 cut(s)	406
HpyCH4V	TGCA	5 cut(s)	41, 47, 582, 836, 850
HpyF10VI	GCNNNNNNNGC	6 cut(s)	233, 242, 270, 686, 719, 767
HpyF3I	CTNAG	3 cut(s)	171, 381, 775
HpySE526I	ACGT	1 cut(s)	406
Hsp92II	CATG	4 cut(s)	428, 642, 710, 875
HspAI	GCGC	2 cut(s)	243, 887
Ksp22I	TGATCA	2 cut(s)	421, 427
Kzo9I	GATC	5 cut(s)	174, 421, 427, 874, 895
LmnI	GCTCC	1 cut(s)	374
LpnPI	CCDG	4 cut(s)	33, 274, 579, 747
Lsp1109I	GCAGC	8 cut(s)	31, 53, 75, 78, 223, 501, 504, 706
MaeI	CTAG	6 cut(s)	392, 455, 471, 486, 753, 925
MaeII	ACGT	1 cut(s)	406
MaeIII	GTNAC	1 cut(s)	497
MalI	GATC	5 cut(s)	176, 423, 429, 876, 897
MboI	GATC	5 cut(s)	174, 421, 427, 874, 895
MboII	GAAGA	5 cut(s)	102, 260, 597, 599, 890
MflI	RGATCY	1 cut(s)	895
MluCI	AATT	3 cut(s)	343, 535, 616
MlyI	GAGTC	2 cut(s)	311, 767
MmeI	TCCRAC	2 cut(s)	40, 651
MroXI	GAANNNNTTC	1 cut(s)	867
MslI	CAYNNNNRTG	1 cut(s)	305
MspA1I	CMGCKG	3 cut(s)	44, 719, 734
MspI	CCGG	1 cut(s)	566
Mva1269I	GAATGC	2 cut(s)	51, 336
MvnI	CGCG	2 cut(s)	243, 273
MwoI	GCNNNNNNNGC	6 cut(s)	233, 242, 270, 686, 719, 767
NdeII	GATC	5 cut(s)	174, 421, 427, 874, 895
NlaIII	CATG	4 cut(s)	428, 642, 710, 875
NlaIV	GGNNCC	2 cut(s)	214, 376
NmuCI	GTSAC	1 cut(s)	497
NotI	GCGGCCGC	1 cut(s)	714
NspV	TTCGAA	2 cut(s)	340, 792
OliI	CACNNNNGTG	1 cut(s)	305
PagI	TCATGA	2 cut(s)	424, 871
PaqCI	CACCTGC	1 cut(s)	752
PceI	AGGCCT	1 cut(s)	151
PctI	GAATGC	2 cut(s)	51, 336
PdmI	GAANNNNTTC	1 cut(s)	867
PflFI	GACNNNGTC	1 cut(s)	554
PleI	GAGTC	2 cut(s)	311, 767
PpsI	GAGTC	2 cut(s)	311, 767
PspN4I	GGNNCC	2 cut(s)	214, 376
PsrI	GAACNNNNNNTAC	4 cut(s)	400, 432, 441, 473
PstI	CTGCAG	1 cut(s)	49
PsuI	RGATCY	1 cut(s)	895
PsyI	GACNNNGTC	1 cut(s)	554
PvuII	CAGCTG	1 cut(s)	44
RsaI	GTAC	5 cut(s)	459, 469, 478, 742, 757
RsaNI	GTAC	5 cut(s)	458, 468, 477, 741, 756
RseI	CAYNNNNRTG	1 cut(s)	305
Sau3AI	GATC	5 cut(s)	174, 421, 427, 874, 895
ScaI	AGTACT	3 cut(s)	469, 478, 742
SchI	GAGTC	2 cut(s)	311, 767
SetI	ASST	7 cut(s)	46, 218, 409, 525, 633, 766, 772
SfcI	CTRYAG	1 cut(s)	45
SfuI	TTCGAA	2 cut(s)	340, 792
SmiMI	CAYNNNNRTG	1 cut(s)	305
SpeI	ACTAGT	3 cut(s)	454, 470, 752
Sse9I	AATT	3 cut(s)	343, 535, 616
SseBI	AGGCCT	1 cut(s)	151
SsiI	CCGC	8 cut(s)	227, 241, 258, 273, 713, 717, 734, 902
SspMI	CTAG	6 cut(s)	392, 455, 471, 486, 753, 925
StuI	AGGCCT	1 cut(s)	151
TaaI	ACNGT	2 cut(s)	444, 868
TaiI	ACGT	1 cut(s)	409
TaqI	TCGA	5 cut(s)	286, 340, 515, 693, 792
TasI	AATT	3 cut(s)	343, 535, 616
TatI	WGTACW	3 cut(s)	467, 476, 740
TauI	GCSGC	4 cut(s)	260, 276, 716, 719
TscAI	CASTG	1 cut(s)	502
TseFI	GTSAC	1 cut(s)	497
TseI	GCWGC	8 cut(s)	41, 44, 63, 66, 236, 489, 492, 719
Tsp45I	GTSAC	1 cut(s)	497
TspDTI	ATGAA	6 cut(s)	267, 286, 627, 815, 854, 860
TspGWI	ACGGA	1 cut(s)	475
TspRI	CASTG	1 cut(s)	502
Tth111I	GACNNNGTC	1 cut(s)	554
XapI	RAATTY	1 cut(s)	343
XmiI	GTMKAC	1 cut(s)	558
XmnI	GAANNNNTTC	1 cut(s)	867
XspI	CTAG	6 cut(s)	392, 455, 471, 486, 753, 925
ZrmI	AGTACT	3 cut(s)	469, 478, 742

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.